Guide to the Human Genome
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Name: SLC39A1 Sequence: fasta or formatted (324aa) NCBI GI: 21361423
Description:

solute carrier family 39 (zinc transporter), member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         39           2
 C cysteine            2.5          8           1
 D aspartate           1.5          5           1
 E glutamate           5.9         19           2
 F phenylalanine       4.0         13           2
 G glycine             9.0         29           2
 H histidine           2.5          8           1
 I isoleucine          4.0         13           1
 K lysine              1.5          5           1
 L leucine            21.0         68           3
 M methionine          1.9          6           1
 N asparagine          0.6          2           1
 P proline             6.2         20           2
 Q glutamine           4.6         15           1
 R arginine            3.7         12           2
 S serine              6.2         20           2
 T threonine           3.4         11           1
 V valine              7.7         25           2
 W tryptophan          0.9          3           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member ... 
SLC39A3               0.245   solute carrier family 39 (zinc transporter), member ...
SLC39A2               0.218   solute carrier family 39 (zinc transporter), member...
SLC39A11              0.030   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.030   solute carrier family 39, member 11 isoform 2 [Homo...
SLC39A7               0.030   solute carrier family 39, member 7 
SLC39A7               0.030   solute carrier family 39, member 7 
SLC39A12              0.028   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.028   solute carrier family 39 (zinc transporter), member...
SLC39A13              0.026   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.026   solute carrier family 39 (zinc transporter), member...
SLC39A3               0.026   solute carrier family 39 (zinc transporter), member ...
SLC39A9               0.025   solute carrier family 39 (zinc transporter), member ...
SLC5A6                0.017   solute carrier family 5 (sodium-dependent vitamin tr...
SLC39A5               0.017   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.017   solute carrier family 39 (metal ion transporter), m...
SLC39A8               0.017   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.017   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.017   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.017   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.017   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.017   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.013   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.013   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.013   solute carrier family 39 (zinc transporter), member...
PODN                  0.013   podocan 
SLC16A8               0.012   solute carrier family 16, member 8 
NQO1                  0.008   NAD(P)H menadione oxidoreductase 1, dioxin-inducible ...
SLC39A6               0.008   solute carrier family 39 (zinc transporter), member...
LTK                   0.008   leukocyte receptor tyrosine kinase isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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