Guide to the Human Genome
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Name: LOC642597 Sequence: fasta or formatted (69aa) NCBI GI: 223633927
Description:

hypothetical protein LOC642597

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          4           1
 C cysteine            0.0          0           0
 D aspartate           2.9          2           1
 E glutamate          13.0          9           2
 F phenylalanine       1.4          1           1
 G glycine             5.8          4           1
 H histidine           2.9          2           1
 I isoleucine          5.8          4           1
 K lysine             10.1          7           2
 L leucine             5.8          4           1
 M methionine          1.4          1           1
 N asparagine          5.8          4           1
 P proline             4.3          3           1
 Q glutamine          13.0          9           2
 R arginine            5.8          4           2
 S serine              5.8          4           1
 T threonine           1.4          1           1
 V valine              8.7          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC642597 
AKAP7                 0.179   A-kinase anchor protein 7 isoform beta 
AKAP7                 0.179   A-kinase anchor protein 7 isoform gamma 
AKAP7                 0.161   A-kinase anchor protein 7 isoform alpha 
LOC728080             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.054   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC643699             0.054   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653125             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.054   PREDICTED: similar to Golgin subfamily A member 8-l...
CEP250                0.045   centrosomal protein 2 
LOC653073             0.045   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.045   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.045   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.045   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.045   PREDICTED: similar to Golgin subfamily A member 8-l...
RB1CC1                0.027   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.027   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
EIF3A                 0.027   eukaryotic translation initiation factor 3, subunit 1...
PNN                   0.027   pinin, desmosome associated protein 
CCDC147               0.027   coiled-coil domain containing 147 
CCDC21                0.027   coiled-coil domain containing 21 
ANKRD20A4             0.027   ankyrin repeat domain 20 family, member A4 
KIAA1024              0.018   hypothetical protein LOC23251 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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