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Search of human proteins with 222352170
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222352170 neuraminidase 2 [Homo sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222352170 neuraminidase 2 [Homo sapiens] 786 0.0
gi|117190519 sialidase 3 [Homo sapiens] 259 2e-69
gi|21704287 sialidase 4 [Homo sapiens] 228 5e-60
gi|4557791 neuraminidase precursor [Homo sapiens] 63 5e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.15
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.15
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.15
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 35 0.15
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 35 0.15
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 35 0.15
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 35 0.15
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 35 0.15
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 33 0.33
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 33 0.56
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 33 0.56
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 33 0.56
gi|4826669 cadherin 15 preproprotein [Homo sapiens] 32 1.2
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 31 1.6
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 31 1.6
gi|91105174 CD19 antigen [Homo sapiens] 30 2.8
gi|24041035 notch 2 preproprotein [Homo sapiens] 30 3.6
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 30 4.7
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 30 4.7
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 29 6.1
gi|169183786 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|169179717 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|169180121 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|14150045 calcium/calmodulin-dependent protein kinase 1 alpha ... 29 8.0
gi|148806859 calcium/calmodulin-dependent protein kinase 1 alpha... 29 8.0
gi|27437011 calcium/calmodulin-dependent protein kinase 1 alpha ... 29 8.0
>gi|222352170 neuraminidase 2 [Homo sapiens]
Length = 380
Score = 786 bits (2029), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MASLPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYD 60
MASLPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYD
Sbjct: 1 MASLPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYD 60
Query: 61 APTHQVQWQAQEVVAQARLDGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRAN 120
APTHQVQWQAQEVVAQARLDGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRAN
Sbjct: 61 APTHQVQWQAQEVVAQARLDGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRAN 120
Query: 121 VTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYA 180
VTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYA
Sbjct: 121 VTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYA 180
Query: 181 YRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHL 240
YRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHL
Sbjct: 181 YRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHL 240
Query: 241 RARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTH 300
RARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTH
Sbjct: 241 RARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTH 300
Query: 301 SWQRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYE 360
SWQRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYE
Sbjct: 301 SWQRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYE 360
Query: 361 EIVFLMFTLKQAFPAEYLPQ 380
EIVFLMFTLKQAFPAEYLPQ
Sbjct: 361 EIVFLMFTLKQAFPAEYLPQ 380
>gi|117190519 sialidase 3 [Homo sapiens]
Length = 461
Score = 259 bits (663), Expect = 2e-69
Identities = 163/393 (41%), Positives = 219/393 (55%), Gaps = 51/393 (12%)
Query: 20 YRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARL 79
YRIPALLY+P + LAFAE+R++++DE A +VLRRG VQW + + +A L
Sbjct: 57 YRIPALLYIPPTHTFLAFAEKRSTRRDEDALHLVLRRGLRIGQL--VQWGPLKPLMEATL 114
Query: 80 DGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSP 139
GHR+MNPCP+++ ++G +FLFFI + G VTE+QQ+ + N RLC + S D G +WS
Sbjct: 115 PGHRTMNPCPVWEQKSGCVFLFFICVRGHVTERQQIVSGRNAARLCFIYSQDAGCSWSEV 174
Query: 140 RDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYAY---RKLHPIQRPI---PS 193
RDLT+ IG + W+TFAVGPGH +QL ++ LV+PAY Y Q P P
Sbjct: 175 RDLTEEVIGSELKHWATFAVGPGHGIQL--QSGRLVIPAYTYYIPSWFFCFQLPCKTRPH 232
Query: 194 AFCFLSHDHGRTWARGHFV-AQDTLECQVAEVETGE--QRVVTLNARSHLRARVQAQSTN 250
+ S D G TW G + T+EC+VAEV TG V+ +AR+ R R +A ST+
Sbjct: 233 SLMIYSDDLGVTWHHGRLIRPMVTVECEVAEV-TGRAGHPVLYCSARTPNRCRAEALSTD 291
Query: 251 DGLDFQESQLVKKLVEPPPQGCQGSVISF------------------PSPRSGPGSPAQ- 291
G FQ L ++L E PP GCQGSV+SF +S PGS +
Sbjct: 292 HGEGFQRLALSRQLCE-PPHGCQGSVVSFRPLEIPHRCQDSSSKDAPTIQQSSPGSSLRL 350
Query: 292 ----------WLLYTHPTHSWQRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMG 341
WLLY+HPT QR DLG YLN P WS P +L G C YSDL ++
Sbjct: 351 EEEAGTPSESWLLYSHPTSRKQRVDLGIYLNQTPLEAACWSRPWILHCGPCGYSDLAAL- 409
Query: 342 TGPDGSPLFGCLYEA---NDYEEIVFLMFTLKQ 371
+ LFGCL+E + E+I F +FT ++
Sbjct: 410 ---EEEGLFGCLFECGTKQECEQIAFRLFTHRE 439
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 228 bits (582), Expect = 5e-60
Identities = 149/342 (43%), Positives = 186/342 (54%), Gaps = 36/342 (10%)
Query: 20 YRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARL 79
YR+P+LL +P +LLAF EQR S D HA +VLRRG + V+W A V+ A L
Sbjct: 34 YRVPSLLPVPPGPTLLAFVEQRLSPDDSHAHRLVLRRGTLAGGS--VRWGALHVLGTAAL 91
Query: 80 DGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSP 139
HRSMNPCP++DA TGT+FLFFIA+ G E Q+ T N RLC V S D G +W S
Sbjct: 92 AEHRSMNPCPVHDAGTGTVFLFFIAVLGHTPEAVQIATGRNAARLCCVASRDAGLSWGSA 151
Query: 140 RDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYAYRK-----LHPIQRPIPSA 194
RDLT+ AIG A ++W+TFAVGPGH +QL + L+VPAY YR I R P +
Sbjct: 152 RDLTEEAIGGAVQDWATFAVGPGHGVQL--PSGRLLVPAYTYRVDRRECFGKICRTSPHS 209
Query: 195 FCFLSHDHGRTWARGHFVAQ-DTLECQVAEVETGEQ-RVVTLNARSHLRARVQAQSTNDG 252
F F S DHGRTW G V + ECQ+A V+ G+ + NARS L +RVQA ST++G
Sbjct: 210 FAFYSDDHGRTWRCGGLVPNLRSGECQLAAVDGGQAGSFLYCNARSPLGSRVQALSTDEG 269
Query: 253 LDFQESQLVKKLVEPPPQGCQGSVISFPSPRS----------GPGSPAQWLLYTHPTHSW 302
F ++ V L E GCQGS++ FP+P GPGSP Q L H
Sbjct: 270 TSFLPAERVASLPE-TAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHE- 327
Query: 303 QRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGTGP 344
P EA +P +S LQ G GP
Sbjct: 328 -------------PPEEAAVDPRGGQVPGGPFSRLQPRGDGP 356
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 268 PPQGCQGSV----ISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 323
P G G V ++ P P + P WLLY+HP R +G L+ P P +W+E
Sbjct: 361 PRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTE 420
Query: 324 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEA---NDYEEIVFLMFTLKQ 371
P ++ +G YSDL S+G P+G +F CLYE+ Y+EI F F+L++
Sbjct: 421 PWVIYEGPSGYSDLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLRE 471
>gi|4557791 neuraminidase precursor [Homo sapiens]
Length = 415
Score = 62.8 bits (151), Expect = 5e-10
Identities = 102/372 (27%), Positives = 150/372 (40%), Gaps = 72/372 (19%)
Query: 20 YRIPALLYLPGQQSLLAFAEQRA-SKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQAR 78
+RIP + P + +LLAFAE R S DE A+ I LRR T W +
Sbjct: 77 FRIPLITATP-RGTLLAFAEARKMSSSDEGAKFIALRRSMDQGST----WSPTAFIVNDG 131
Query: 79 LDGHRSMN-PCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWS 137
D +N + D +TG +FLF+ + Q V V S D G +WS
Sbjct: 132 -DVPDGLNLGAVVSDVETGVVFLFYSLCAHKAGCQ--------VASTMLVWSKDDGVSWS 182
Query: 138 SPRDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARS--LVVPAYAYRKLHPIQRPIPSAF 195
+PR+L+ IG FA GPG +Q R L+V + ++R F
Sbjct: 183 TPRNLS-LDIGT-----EVFAPGPGSGIQKQREPRKGRLIVCGHG-----TLERD--GVF 229
Query: 196 CFLSHDHGRTWARGHFVAQ------------DTLECQVAEVETGEQRVVTLNARS----- 238
C LS DHG +W G V+ + ECQ E+ G V +NAR+
Sbjct: 230 CLLSDDHGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGS---VVINARNQNNYH 286
Query: 239 -HLRARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTH 297
H R +++ D L ++ +LV+P G+V+ + + + +++
Sbjct: 287 CHCRIVLRSYDACDTLRPRDVTFDPELVDPVV--AAGAVV----------TSSGIVFFSN 334
Query: 298 PTHSWQRADLGAYLNPRPPAPEAW-SEPVLLAKGSCAYSDLQSMGTGPDG---SPLFGCL 353
P H R +L L +W E V L G YS L ++ DG +P L
Sbjct: 335 PAHPEFRVNL--TLRWSFSNGTSWRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVL 392
Query: 354 YE--ANDYEEIV 363
YE N Y E +
Sbjct: 393 YEKGRNHYTESI 404
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 266 EPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
E PQG QG V FP P+ PG P + L P H QR + G PP P
Sbjct: 929 ERGPQGPQGPV-GFPGPKGPPGPPGKDGL---PGHPGQRGETGFQGKTGPPGP 977
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 266 EPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
E PQG QG V FP P+ PG P + L P H QR + G PP P
Sbjct: 878 ERGPQGPQGPV-GFPGPKGPPGPPGKDGL---PGHPGQRGETGFQGKTGPPGP 926
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 266 EPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
E PQG QG V FP P+ PG P + L P H QR + G PP P
Sbjct: 917 ERGPQGPQGPV-GFPGPKGPPGPPGKDGL---PGHPGQRGETGFQGKTGPPGP 965
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE-PV 325
PP G G + + +P P + + L S R L P+PP P+ E P
Sbjct: 33 PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPG 92
Query: 326 LLAKGSCAYSDLQSMGTGPDGSPLFGCLY 354
A GS QS G GP SP+F +Y
Sbjct: 93 AAAIGSARG---QSTGKGPPQSPVFEGVY 118
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE-PV 325
PP G G + + +P P + + L S R L P+PP P+ E P
Sbjct: 33 PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPG 92
Query: 326 LLAKGSCAYSDLQSMGTGPDGSPLFGCLY 354
A GS QS G GP SP+F +Y
Sbjct: 93 AAAIGSARG---QSTGKGPPQSPVFEGVY 118
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE-PV 325
PP G G + + +P P + + L S R L P+PP P+ E P
Sbjct: 33 PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPG 92
Query: 326 LLAKGSCAYSDLQSMGTGPDGSPLFGCLY 354
A GS QS G GP SP+F +Y
Sbjct: 93 AAAIGSARG---QSTGKGPPQSPVFEGVY 118
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE-PV 325
PP G G + + +P P + + L S R L P+PP P+ E P
Sbjct: 33 PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPG 92
Query: 326 LLAKGSCAYSDLQSMGTGPDGSPLFGCLY 354
A GS QS G GP SP+F +Y
Sbjct: 93 AAAIGSARG---QSTGKGPPQSPVFEGVY 118
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE-PV 325
PP G G + + +P P + + L S R L P+PP P+ E P
Sbjct: 33 PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPG 92
Query: 326 LLAKGSCAYSDLQSMGTGPDGSPLFGCLY 354
A GS QS G GP SP+F +Y
Sbjct: 93 AAAIGSARG---QSTGKGPPQSPVFEGVY 118
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 33.5 bits (75), Expect = 0.33
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 261 VKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEA 320
+ KL PP G + V S P P PG P L + P S L +P P AP+
Sbjct: 1502 IAKLSIRPPGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLS---SPLPEAPQP 1558
Query: 321 WSEP 324
EP
Sbjct: 1559 KEEP 1562
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 32.7 bits (73), Expect = 0.56
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
P PQG G FP P+ PG P + L P H QR ++G PP P
Sbjct: 793 PGPQGPNG----FPGPKGPPGPPGKDGL---PGHPGQRGEVGFQGKTGPPGP 837
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 32.7 bits (73), Expect = 0.56
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
P PQG G FP P+ PG P + L P H QR ++G PP P
Sbjct: 772 PGPQGPNG----FPGPKGPPGPPGKDGL---PGHPGQRGEVGFQGKTGPPGP 816
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 32.7 bits (73), Expect = 0.56
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
P PQG G FP P+ PG P + L P H QR ++G PP P
Sbjct: 879 PGPQGPNG----FPGPKGPPGPPGKDGL---PGHPGQRGEVGFQGKTGPPGP 923
>gi|4826669 cadherin 15 preproprotein [Homo sapiens]
Length = 814
Score = 31.6 bits (70), Expect = 1.2
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 213 AQDTLECQVAEVETGEQRVVTLNA------RSHLRARVQAQSTNDGLDFQESQLVKKLVE 266
A D C+ E++ Q L A R + RV Q TN+ FQE+ L L E
Sbjct: 327 ALDYESCEHYELKVSVQNEAPLQAAALRAERGQAKVRVHVQDTNEPPVFQENPLRTSLAE 386
Query: 267 PPPQGCQGSVISFPSPRSGPGSPAQWLLYT--HPTHSWQRADLGA-------YLNPRPP- 316
P G++++ S R Q L Y+ + W + D L+P P
Sbjct: 387 GAP---PGTLVATFSARDPDTEQLQRLSYSKDYDPEDWLQVDAATGRIQTQHVLSPASPF 443
Query: 317 APEAWSEPVLLAK 329
W ++LA+
Sbjct: 444 LKGGWYRAIVLAQ 456
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 266 EPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
E P G QG FP P+ PG P + L P H QR + G PP P
Sbjct: 947 ERGPNGPQGPT-GFPGPKGPPGPPGKDGL---PGHPGQRGETGFQGKTGPPGP 995
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 31.2 bits (69), Expect = 1.6
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 40/152 (26%)
Query: 223 EVETGEQRVVTL-----------NARSHLRARVQAQSTNDGLDFQESQLVKKLVEPPPQG 271
E E GEQ++ T + H R R +A T+ G + P PQG
Sbjct: 76 EAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKTSPGCN----------CPPAPQG 125
Query: 272 CQG----SVIS------FPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAW 321
G S+I P R PG P L P H + D+G P P P+
Sbjct: 126 SPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQ 185
Query: 322 SEPVLLAKGSCAY-----SDLQSMGTGPDGSP 348
KG C Q+ GP G P
Sbjct: 186 KG----EKGQCGEYPHRGEQSQASIQGPPGPP 213
>gi|91105174 CD19 antigen [Homo sapiens]
Length = 556
Score = 30.4 bits (67), Expect = 2.8
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 263 KLVEPP---PQGCQGSVISFPSPRSGPGSPAQW---LLYTHPTHSWQRADL---GAYLNP 313
K+ PP PQ G+V+S P+P SG G +W L T P++ +D+ GA +
Sbjct: 335 KVTPPPGSGPQNQYGNVLSLPTPTSGLGRAQRWAAGLGGTAPSYGNPSSDVQADGALGSR 394
Query: 314 RPP 316
PP
Sbjct: 395 SPP 397
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 30.0 bits (66), Expect = 3.6
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 256 QESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRP 315
Q+ V + + P SV +P+P S + P+HS YL P P
Sbjct: 2360 QQDGQVAQTILPAYHPFPASVGKYPTPPSQHSYASSNAAERTPSHSGHLQGEHPYLTPSP 2419
Query: 316 PAPEAWS 322
+P+ WS
Sbjct: 2420 ESPDQWS 2426
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 29.6 bits (65), Expect = 4.7
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 267 PPPQGCQGSVISFPSPRSGPG--------SPAQWLLYTHPTHSWQRADLGAYLNPRPPAP 318
PPP +V+S P P SGPG SPA+ P S P PP P
Sbjct: 413 PPPPPTYRTVVSSPGPGSGPGPGTTSGASSPARPATPLVPCRS---------TTPPPPPP 463
Query: 319 EAWSEPVL 326
S P L
Sbjct: 464 RPPSRPKL 471
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 301 SWQRADL---GAYLNPRPPAPEAWSEPVL-LAKGSCAYSDLQSMGTGPDGSP 348
SW+ L +L PRPP P A S+PVL LA S A + + GP P
Sbjct: 67 SWKELSLLKATPHLQPRPP-PAALSQPVLPLAPSSSAPGEAAGLRAGPCDHP 117
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 29.3 bits (64), Expect = 6.1
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 247 QSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPT-----HS 301
QST + S L + PP Q ++ SP S P + L T PT +
Sbjct: 422 QSTGEATSVAHSPLKTPSLPTPPGCSQSELLPGTSPDSKPTATFILLTPTSPTLPVTDTT 481
Query: 302 WQRADLGAYLNPRPPAPEA 320
W + A +P PP P A
Sbjct: 482 WPPSTSQADRSPMPPDPPA 500
>gi|169183786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 271 GCQGSVISFPSPRSGPGSPAQWLLYTHPTHSW 302
G +G ++S+ +P+ PGS + WLL W
Sbjct: 7 GSRGGILSWRAPQRSPGSLSPWLLGRRGRRPW 38
>gi|169179717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 271 GCQGSVISFPSPRSGPGSPAQWLLYTHPTHSW 302
G +G ++S+ +P+ PGS + WLL W
Sbjct: 7 GSRGGILSWRAPQRSPGSLSPWLLGRRGRRPW 38
>gi|169180121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 29.3 bits (64), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 271 GCQGSVISFPSPRSGPGSPAQWLLYTHPTHSW 302
G +G ++S+ +P+ PGS + WLL W
Sbjct: 7 GSRGGILSWRAPQRSPGSLSPWLLGRRGRRPW 38
>gi|14150045 calcium/calmodulin-dependent protein kinase 1 alpha
isoform a [Homo sapiens]
Length = 505
Score = 28.9 bits (63), Expect = 8.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 265 VEPPPQGCQGSVISFPSPRSGPGSPA----QWLLYTHPTHSWQRADLGAYLNPRPP--AP 318
V+PPP+ SVI + R P P+ + L P S+ A G Y +P
Sbjct: 42 VDPPPRARAASVIPGSTSRLLPARPSLSARKLSLQERPAGSYLEAQAGPYATGPASHISP 101
Query: 319 EAWSEPVL 326
AW P +
Sbjct: 102 RAWRRPTI 109
>gi|148806859 calcium/calmodulin-dependent protein kinase 1 alpha
isoform b [Homo sapiens]
Length = 520
Score = 28.9 bits (63), Expect = 8.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 265 VEPPPQGCQGSVISFPSPRSGPGSPA----QWLLYTHPTHSWQRADLGAYLNPRPP--AP 318
V+PPP+ SVI + R P P+ + L P S+ A G Y +P
Sbjct: 42 VDPPPRARAASVIPGSTSRLLPARPSLSARKLSLQERPAGSYLEAQAGPYATGPASHISP 101
Query: 319 EAWSEPVL 326
AW P +
Sbjct: 102 RAWRRPTI 109
>gi|27437011 calcium/calmodulin-dependent protein kinase 1 alpha
isoform a [Homo sapiens]
Length = 505
Score = 28.9 bits (63), Expect = 8.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 265 VEPPPQGCQGSVISFPSPRSGPGSPA----QWLLYTHPTHSWQRADLGAYLNPRPP--AP 318
V+PPP+ SVI + R P P+ + L P S+ A G Y +P
Sbjct: 42 VDPPPRARAASVIPGSTSRLLPARPSLSARKLSLQERPAGSYLEAQAGPYATGPASHISP 101
Query: 319 EAWSEPVL 326
AW P +
Sbjct: 102 RAWRRPTI 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,269,301
Number of Sequences: 37866
Number of extensions: 900367
Number of successful extensions: 2284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 35
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.