Guide to the Human Genome
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Name: LOC100131180 Sequence: fasta or formatted (152aa) NCBI GI: 169180121
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {152aa} PREDICTED: hypothetical protein
alt mRNA {152aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         17           1
 C cysteine            1.3          2           1
 D aspartate           3.3          5           1
 E glutamate           2.0          3           2
 F phenylalanine       2.0          3           1
 G glycine            18.4         28           3
 H histidine           1.3          2           1
 I isoleucine          1.3          2           1
 K lysine              1.3          2           1
 L leucine            11.2         17           2
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline             9.9         15           1
 Q glutamine           2.6          4           1
 R arginine           12.5         19           2
 S serine              8.6         13           2
 T threonine           3.9          6           1
 V valine              2.6          4           1
 W tryptophan          5.3          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131180          1.000   PREDICTED: hypothetical protein 
LOC100131180          1.000   PREDICTED: hypothetical protein 
LOC100293869          0.053   PREDICTED: hypothetical protein 
LOC100291040          0.053   PREDICTED: hypothetical protein XP_002347839 
LOC100289012          0.053   PREDICTED: hypothetical protein XP_002343616 
ABCB10                0.027   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100291835          0.023   PREDICTED: hypothetical protein XP_002346266 
LOC100291627          0.023   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.023   PREDICTED: hypothetical protein XP_002348034 
LOC100290946          0.023   PREDICTED: hypothetical protein XP_002347121 
LOC100288231          0.023   PREDICTED: hypothetical protein XP_002343737 
LOC100288840          0.023   PREDICTED: hypothetical protein XP_002344246 
WTIP                  0.023   Wilms tumor 1 interacting protein 
GPR37                 0.020   G protein-coupled receptor 37 
LOC100129036          0.020   PREDICTED: hypothetical protein 
LOC389333             0.017   hypothetical protein LOC389333 
COL1A1                0.017   alpha 1 type I collagen preproprotein 
FOXO6                 0.017   PREDICTED: forkhead box protein O6 
LOC100127891          0.017   PREDICTED: hypothetical protein 
OTUD5                 0.017   OTU domain containing 5 isoform a 
OTUD5                 0.017   OTU domain containing 5 isoform b 
OTUD5                 0.017   OTU domain containing 5 isoform b 
LOC645307             0.017   PREDICTED: hypothetical protein 
LOC100287290          0.013   PREDICTED: hypothetical protein 
LOC100287450          0.013   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.013   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.013   PREDICTED: hypothetical protein XP_002343548 
LOC100287290          0.013   PREDICTED: hypothetical protein XP_002342446 
STK19                 0.013   serine/threonine kinase 19 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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