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Search of human proteins with 221219042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 254 1e-68
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 160 3e-40
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 74 4e-14
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 63 5e-11
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 60 6e-10
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 59 1e-09
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 55 1e-08
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 54 3e-08
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 48 2e-06
gi|10834978 interleukin 8 precursor [Homo sapiens] 43 6e-05
gi|118572603 ubinuclein 1 [Homo sapiens] 35 0.020
gi|118572601 ubinuclein 1 [Homo sapiens] 35 0.020
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 34 0.034
gi|5454040 small inducible cytokine A19 precursor [Homo sapiens] 32 0.17
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 29 0.83
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 29 0.83
gi|10862701 ret proto-oncogene isoform c [Homo sapiens] 28 1.4
gi|10862703 ret proto-oncogene isoform a [Homo sapiens] 28 1.4
gi|4557345 arginine vasopressin receptor 2 isoform 1 [Homo sapiens] 28 1.4
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 28 1.4
gi|38372917 C1q and tumor necrosis factor related protein 1 isof... 27 3.2
gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo sapi... 27 3.2
gi|21361794 TIP120 protein [Homo sapiens] 27 3.2
gi|13569944 C1q and tumor necrosis factor related protein 1 isof... 27 3.2
gi|27436867 slit and trk like 4 protein [Homo sapiens] 27 3.2
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 27 4.1
gi|54792782 C-type lectin domain family 16, member A [Homo sapiens] 27 4.1
gi|24308211 integrator complex subunit 2 [Homo sapiens] 27 5.4
gi|167830477 milk fat globule-EGF factor 8 protein isoform b [Ho... 27 5.4
gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Ho... 27 5.4
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 254 bits (649), Expect = 1e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MSLRLKATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCV 60
MSLRLKATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCV
Sbjct: 1 MSLRLKATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCV 60
Query: 61 CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE
Sbjct: 61 CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
Query: 121 GDGSGA 126
GDGSGA
Sbjct: 121 GDGSGA 126
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 160 bits (404), Expect = 3e-40
Identities = 87/128 (67%), Positives = 99/128 (77%), Gaps = 6/128 (4%)
Query: 1 MSLRLKATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSK----DSDLYIE 56
MSLRL TPSCNSARP HALQVLLLLSLLLTAL S T GQ+KRNL K K DSDLY E
Sbjct: 1 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE 60
Query: 57 LCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQ 116
L C+C+K+ SGIHP N I ++ + + G CN+V+VIA LKDGRK+ LDP+APRIKKIVQ
Sbjct: 61 LRCMCIKTTSGIHPKN-IQSLEV-IGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQ 118
Query: 117 KMLEGDGS 124
K L GD S
Sbjct: 119 KKLAGDES 126
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 73.6 bits (179), Expect = 4e-14
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 12/107 (11%)
Query: 16 PFHALQVLLLLSLLLTAL-PSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNII 74
P +L LL+L LLLT P + G + L EL CVC+++ G+HP +I
Sbjct: 14 PSSSLCALLVLLLLLTQPGPIASAGPAAAVLR---------ELRCVCLQTTQGVHPK-MI 63
Query: 75 PNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEG 121
N+ ++ + G C+KV+V+A LK+G+++ LDPEAP +KK++QK+L+G
Sbjct: 64 SNLQVFAI-GPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDG 109
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 63.2 bits (152), Expect = 5e-11
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 14/105 (13%)
Query: 20 LQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNIIPNIHI 79
L+V LLL LL+ A +R G S + EL C C+++ GIHP NI ++++
Sbjct: 16 LRVALLLLLLVAA--------GRRAAGAS----VATELRCQCLQTLQGIHPKNI-QSVNV 62
Query: 80 YLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEGDGS 124
G C + +VIA LK+GRK L+P +P +KKI++KML D S
Sbjct: 63 KS-PGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 106
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 59.7 bits (143), Expect = 6e-10
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 15/116 (12%)
Query: 9 PSCNSAR---PFHALQVLLLLSLLLTAL-PSCTNGQSKRNLGKSKDSDLYIELCCVCVKS 64
PS +AR P +L LL L LLLT P + G S + EL C C++
Sbjct: 4 PSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPV---------SAVLTELRCTCLRV 54
Query: 65 ASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
++P I + ++ +G C+KV+V+A LK+G+++ LDPEAP +KK++QK+L+
Sbjct: 55 TLRVNPKTI-GKLQVFP-AGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILD 108
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 58.5 bits (140), Expect = 1e-09
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 17/120 (14%)
Query: 6 KATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSA 65
+AT S + P L+V LLL LL+ A S+R G + L EL C C+++
Sbjct: 3 RATLSAAPSNP-RLLRVALLLLLLVAA--------SRRAAG----APLATELRCQCLQTL 49
Query: 66 SGIHPSNIIPNIHIYLLSGAP-CNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEGDGS 124
GIH NI + + S P C + +VIA LK+G+K L+P +P +KKI++KML+ S
Sbjct: 50 QGIHLKNIQS---VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKS 106
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 55.5 bits (132), Expect = 1e-08
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 7 ATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSAS 66
AT S + P L+V LLL LL+ A S+R G S + EL C C+++
Sbjct: 4 ATLSAAPSNP-RLLRVALLLLLLVAA--------SRRAAGAS----VVTELRCQCLQTLQ 50
Query: 67 GIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKML 119
GIH NI ++++ G C + +VIA LK+G+K L+P +P ++KI++K+L
Sbjct: 51 GIHLKNI-QSVNVRS-PGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKIL 101
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 53.9 bits (128), Expect = 3e-08
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 56 ELCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIV 115
+L C+CVK+ S + P +I ++ + + +G C Q+IA LK+GRK+ LD +AP KKI+
Sbjct: 38 DLQCLCVKTTSQVRPRHIT-SLEV-IKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKII 95
Query: 116 QKMLE 120
+K+LE
Sbjct: 96 KKLLE 100
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 47.8 bits (112), Expect = 2e-06
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 12/100 (12%)
Query: 21 QVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNIIPNIHIY 80
++L L LLL + + +++ +D DL C+CVK+ S + P +I ++ +
Sbjct: 16 EMLFLALLLLPVVVAFARAEAE------EDGDLQ----CLCVKTTSQVRPRHIT-SLEV- 63
Query: 81 LLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
+ +G C Q+IA LK+GRK+ LD +A KKI+++ LE
Sbjct: 64 IKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLE 103
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 43.1 bits (100), Expect = 6e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 56 ELCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIV 115
EL C C+K+ S I + + + SG C ++I L DGR++ LDP+ ++++V
Sbjct: 31 ELRCQCIKTYSKPFHPKFIKELRV-IESGPHCANTEIIVKLSDGRELCLDPKENWVQRVV 89
Query: 116 QKMLE 120
+K L+
Sbjct: 90 EKFLK 94
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 34.7 bits (78), Expect = 0.020
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 71 SNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEGDG 123
S + ++ YL S PC+K A+LK RK++L + R+K+ +QK+ E G
Sbjct: 404 SQVRSGVYAYLASFLPCSKD---ALLKRARKLHLYEQGGRLKEPLQKLKEAIG 453
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 34.7 bits (78), Expect = 0.020
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 71 SNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEGDG 123
S + ++ YL S PC+K A+LK RK++L + R+K+ +QK+ E G
Sbjct: 404 SQVRSGVYAYLASFLPCSKD---ALLKRARKLHLYEQGGRLKEPLQKLKEAIG 453
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 33.9 bits (76), Expect = 0.034
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 59 CVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQK 117
C C+ + G + ++ + S + C K+++IA LK+G + L+P++ +K++++K
Sbjct: 31 CSCISTNQGTIHLQSLKDLKQFAPSPS-CEKIEIIATLKNGVQTCLNPDSADVKELIKK 88
>gi|5454040 small inducible cytokine A19 precursor [Homo sapiens]
Length = 98
Score = 31.6 bits (70), Expect = 0.17
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 56 ELCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIV 115
E CC+ V P I+ N H YLL C V+ GR++ P+ P +++I+
Sbjct: 27 EDCCLSVTQKP--IPGYIVRNFH-YLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERII 83
Query: 116 QKM 118
Q++
Sbjct: 84 QRL 86
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 29.3 bits (64), Expect = 0.83
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 61 CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKM 118
C S P N I + Y + + C+K VI + K GR++ DP ++K V +
Sbjct: 35 CFSYTSRQIPQNFIAD---YFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 29.3 bits (64), Expect = 0.83
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 61 CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKM 118
C S P N I + Y + + C+K VI + K GR++ DP ++K V +
Sbjct: 35 CFSYTSRQIPQNFIAD---YFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|10862701 ret proto-oncogene isoform c [Homo sapiens]
Length = 1072
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 23 LLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNIIPNIHIYLL 82
+LLL ++ LP + S +L S+ + + ++ VCV++ N+ +H
Sbjct: 388 VLLLHFNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLH---S 444
Query: 83 SGAPCNKVQVIAMLKD 98
SGA C+ + V+ +D
Sbjct: 445 SGANCSTLGVVTSAED 460
>gi|10862703 ret proto-oncogene isoform a [Homo sapiens]
Length = 1114
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 23 LLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNIIPNIHIYLL 82
+LLL ++ LP + S +L S+ + + ++ VCV++ N+ +H
Sbjct: 388 VLLLHFNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLH---S 444
Query: 83 SGAPCNKVQVIAMLKD 98
SGA C+ + V+ +D
Sbjct: 445 SGANCSTLGVVTSAED 460
>gi|4557345 arginine vasopressin receptor 2 isoform 1 [Homo sapiens]
Length = 371
Score = 28.5 bits (62), Expect = 1.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 25 LLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSN 72
+L +LL +L SCTN + S S+L LCC ++ + P +
Sbjct: 308 VLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQD 355
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 28.5 bits (62), Expect = 1.4
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 20 LQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIHPSNIIPNIHI 79
L LL+ + AL SC +G +K ELCC+ ++ S IP I
Sbjct: 4 LAAALLVLVCTMALCSCAQ------VGTNK------ELCCL-------VYTSWQIPQKFI 44
Query: 80 --YLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKM 118
Y + C K VI + K GR++ DP ++K + +
Sbjct: 45 VDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQKYISDL 85
>gi|38372917 C1q and tumor necrosis factor related protein 1
isoform 1 [Homo sapiens]
Length = 281
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 48 SKDSDLYIELCCVCVKSASGIHPSNIIPNIHIYLLSG 84
S+D L C C + ++P+ +P I+I +L G
Sbjct: 63 SQDQGLPASRCLRCCDPGTSMYPATAVPQINITILKG 99
>gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo
sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 80 YLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKM 118
Y + + C+K VI + K GR++ P P ++ ++K+
Sbjct: 70 YFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 108
>gi|21361794 TIP120 protein [Homo sapiens]
Length = 1230
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 61 CVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
C+ + I P ++P + YL+SG+ + V+ +K + P P +K + L+
Sbjct: 954 CLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK 1013
>gi|13569944 C1q and tumor necrosis factor related protein 1
isoform 1 [Homo sapiens]
Length = 281
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 48 SKDSDLYIELCCVCVKSASGIHPSNIIPNIHIYLLSG 84
S+D L C C + ++P+ +P I+I +L G
Sbjct: 63 SQDQGLPASRCLRCCDPGTSMYPATAVPQINITILKG 99
>gi|27436867 slit and trk like 4 protein [Homo sapiens]
Length = 837
Score = 27.3 bits (59), Expect = 3.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
Query: 22 VLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVC 61
+ L L L+L+AL S TN DSD+ +E+C VC
Sbjct: 1 MFLWLFLILSALISSTNA----------DSDISVEICNVC 30
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 71 SNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEA--PRIKKIVQKMLEGD 122
+N++ ++ +Y+ SGAP ++ L++ + MYL +++ + Q LEG+
Sbjct: 482 NNLLKSLPVYIFSGAPLARLN----LRNNKFMYLPVSGVLDQLQSLTQIDLEGN 531
>gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]
Length = 98
Score = 26.9 bits (58), Expect = 4.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 87 CNKVQVIA-MLKDGRKMYLDPEAPRIKKIVQ 116
C +V++IA M K G K L+PE+ IK +++
Sbjct: 57 CPRVEIIATMKKKGEKRCLNPESKAIKNLLK 87
>gi|54792782 C-type lectin domain family 16, member A [Homo sapiens]
Length = 1053
Score = 26.9 bits (58), Expect = 4.1
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 55 IELCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLD 105
+EL C+ +K + I+ ++H+ L GA V ++ G ++LD
Sbjct: 562 LELSCLLLKQQVLMSAGCIMKDVHLACLEGAREESVHLVRHFYKGEDIFLD 612
>gi|24308211 integrator complex subunit 2 [Homo sapiens]
Length = 1204
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 31 TALPSCTNGQSKRNLGKSKDSDLYIELCCVCV----KSASGIHPSNIIPNIHIYLLSGAP 86
T P T + K L ++DS L +C+ + A+G++P +++ N+ + + AP
Sbjct: 916 TDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPDSLLRNVQSVITTSAP 975
>gi|167830477 milk fat globule-EGF factor 8 protein isoform b
[Homo sapiens]
Length = 335
Score = 26.6 bits (57), Expect = 5.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 24 LLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIH 69
LL++L + + C NG + + D++ C C+K +G H
Sbjct: 20 LLVALDICSKNPCHNGGLCEEISQEVRGDVFPSYTCTCLKGYAGNH 65
>gi|167830475 milk fat globule-EGF factor 8 protein isoform a
[Homo sapiens]
Length = 387
Score = 26.6 bits (57), Expect = 5.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 24 LLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSASGIH 69
LL++L + + C NG + + D++ C C+K +G H
Sbjct: 20 LLVALDICSKNPCHNGGLCEEISQEVRGDVFPSYTCTCLKGYAGNH 65
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,851,140
Number of Sequences: 37866
Number of extensions: 206103
Number of successful extensions: 471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 38
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.