Search of human proteins with 221136785

Search of human proteins with 221136785

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|221136785 upstream binding transcription factor, RNA
polymerase I-like 1 [Homo sapiens]
         (393 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|221136785 upstream binding transcription factor, RNA polymera...   810   0.0  
gi|239741668 PREDICTED: upstream binding transcription factor, R...   725   0.0  
gi|169163306 PREDICTED: upstream binding transcription factor, R...   725   0.0  
gi|239747816 PREDICTED: upstream binding transcription factor, R...   718   0.0  
gi|239753269 PREDICTED: upstream binding transcription factor, R...   714   0.0  
gi|239741686 PREDICTED: upstream binding transcription factor, R...   714   0.0  
gi|115529449 upstream binding transcription factor, RNA polymera...   280   2e-75
gi|115529451 upstream binding transcription factor, RNA polymera...   280   2e-75
gi|7657671 upstream binding transcription factor, RNA polymerase...   254   9e-68
gi|4507401 transcription factor A, mitochondrial [Homo sapiens]        77   3e-14
gi|83715964 high-mobility group 20B [Homo sapiens]                     55   1e-07
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re...    52   7e-07
gi|226246533 TOX high mobility group box family member 3 isoform...    52   9e-07
gi|226054295 TOX high mobility group box family member 3 isoform...    52   9e-07
gi|8922633 high-mobility group 20A [Homo sapiens]                      52   1e-06
gi|4504425 high-mobility group box 1 [Homo sapiens]                    51   2e-06
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]           51   2e-06
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]           51   2e-06
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]           51   2e-06
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]       50   5e-06
gi|7662322 thymus high mobility group box protein TOX [Homo sapi...    49   1e-05
gi|194688135 high-mobility group box 2 [Homo sapiens]                  48   2e-05
gi|194688133 high-mobility group box 2 [Homo sapiens]                  48   2e-05
gi|11321591 high-mobility group box 2 [Homo sapiens]                   48   2e-05
gi|149408144 TOX high mobility group box family member 2 isoform...    47   2e-05
gi|149408141 TOX high mobility group box family member 2 isoform...    47   2e-05
gi|14249636 TOX high mobility group box family member 2 isoform ...    47   2e-05
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]             47   4e-05
gi|71143137 high-mobility group box 3 [Homo sapiens]                   47   4e-05
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho...    46   7e-05

>gi|221136785 upstream binding transcription factor, RNA polymerase
           I-like 1 [Homo sapiens]
          Length = 393

 Score =  810 bits (2091), Expect = 0.0
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ
Sbjct: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK
Sbjct: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK
Sbjct: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV
Sbjct: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV
Sbjct: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393


>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 3 [Homo sapiens]
          Length = 457

 Score =  725 bits (1871), Expect = 0.0
 Identities = 350/393 (89%), Positives = 368/393 (93%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MALPRSQGHWSN DILRLLECMENN PSDDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 65  MALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 124

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKRPLTAY RFFKE+WPQYSQ
Sbjct: 125 LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQ 184

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQELTKILSKKY+ELPEQMKQKYIQDF+KEKQEFEEKL RFREEHPDL QK KK
Sbjct: 185 MYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKK 244

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           S +SKR Q KVQKK QKNIEEV SLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 245 SDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 304

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 305 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 364

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 365 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 424

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 425 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 457


>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 5 [Homo sapiens]
          Length = 471

 Score =  725 bits (1871), Expect = 0.0
 Identities = 350/393 (89%), Positives = 368/393 (93%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MALPRSQGHWSN DILRLLECMENN PSDDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 79  MALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 138

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKRPLTAY RFFKE+WPQYSQ
Sbjct: 139 LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQ 198

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQELTKILSKKY+ELPEQMKQKYIQDF+KEKQEFEEKL RFREEHPDL QK KK
Sbjct: 199 MYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKK 258

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           S +SKR Q KVQKK QKNIEEV SLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 259 SDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 318

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 319 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 378

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 379 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 438

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 439 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471


>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  718 bits (1853), Expect = 0.0
 Identities = 347/393 (88%), Positives = 367/393 (93%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           +ALPRSQGHWSN DILRLLECMENN P DDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 8   VALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 67

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKR LTAY RFFKE+WPQYSQ
Sbjct: 68  LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQ 127

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQE+TKILSKKY+ELPEQMKQK+IQDFRKEKQEFEEKLARFREEHPDL QK KK
Sbjct: 128 MYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKK 187

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           S + KR Q KVQKK QKNIEEVRSLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 188 SDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 247

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 248 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 307

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 308 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 367

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 368 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  714 bits (1842), Expect = 0.0
 Identities = 345/393 (87%), Positives = 366/393 (93%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           +ALPRSQGHWSN DILRLLECMENN P DDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 8   VALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 67

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKR LTAY RFFKE+WPQYSQ
Sbjct: 68  LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQ 127

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQE+TKILSKKY+ELPEQMKQK+IQDFRKEKQEFEEKLARFREEHPDL QK KK
Sbjct: 128 MYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKK 187

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           S + KR Q KVQKK QKNIEEVRSLPKTD+FFKKVKFHGEPQKPPMNGY KFHQDSWSSK
Sbjct: 188 SDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQDSWSSK 247

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 248 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 307

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 308 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 367

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPE+NRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 368 SMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  714 bits (1842), Expect = 0.0
 Identities = 345/393 (87%), Positives = 366/393 (93%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           +ALPRSQGHWSN DILRLLECMENN P DDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 8   VALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 67

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKR LTAY RFFKE+WPQYSQ
Sbjct: 68  LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQ 127

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           MYPGMRSQE+TKILSKKY+ELPEQMKQK+IQDFRKEKQEFEEKLARFREEHPDL QK KK
Sbjct: 128 MYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKK 187

Query: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
           S + KR Q KVQKK QKNIEEVRSLPKTD+FFKKVKFHGEPQKPPMNGY KFHQDSWSSK
Sbjct: 188 SDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQDSWSSK 247

Query: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 248 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 307

Query: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 308 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 367

Query: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
           SMEPE+NRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 368 SMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score =  280 bits (716), Expect = 2e-75
 Identities = 155/367 (42%), Positives = 221/367 (60%), Gaps = 42/367 (11%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MA P+ Q  WS +D+L LLECM+NN PS+D+S F +T+SHMDW KVAFK+FSG+MC+LKW
Sbjct: 13  MAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKLKW 72

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           +EIS  +RKF TL EL+L+A++ VK   K +K +  PDFPK+PLT Y RFF E   +Y++
Sbjct: 73  VEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAK 132

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           ++P M + +LTKILSKKY+ELPE+ K KYIQDF++EKQEFE  LARFRE+HPDL+Q AKK
Sbjct: 133 LHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 192

Query: 181 SSVSKR------------------------TQNKVQKKFQKNIEE----VRSLPKTDRFF 212
           S + ++                         ++ +QK  + NI E      +L K +R  
Sbjct: 193 SDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAERQL 252

Query: 213 KKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQ 272
           K  KF G P KPP N Y  +  +  ++  M+ +   ERMV   ++W+ + Q +KD +  +
Sbjct: 253 KD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKK 309

Query: 273 AEELQKQYKVKLDLWLKTLSPENYAAY-----------KESTYAKGKNMAMTGGPDPRLK 321
            ++ +K Y+V+L  +L++L  E                K++T    K  A  GG     K
Sbjct: 310 CDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEK 369

Query: 322 QADPQSS 328
              P S+
Sbjct: 370 PKRPVSA 376



 Score =  187 bits (474), Expect = 2e-47
 Identities = 136/415 (32%), Positives = 204/415 (49%), Gaps = 75/415 (18%)

Query: 49  KNFSGEMCR-LKWLEISCNLRKFGTLKELVLEAKKCVKKMNKSQKY---RNGPDFPKRPL 104
           K++  E+ R L+ L      R  G  K L +  K+     +K       + G + PKRP+
Sbjct: 315 KDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPV 374

Query: 105 TAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKY--------IQDFRKE 156
           +A   F +E   Q  +  P +   ELT++L++ + +L E+ K KY         Q  RK 
Sbjct: 375 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKP 434

Query: 157 KQEFEEK----------------------LARFREEHP-----------DLVQKAKKSSV 183
             E EE+                      LARF+ +             ++ +K K   +
Sbjct: 435 GGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWI 494

Query: 184 SKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQ 243
            K  ++  QK++++ + E+R+ P      KK+KF GEP+KPPMNGY KF Q+  S+ E+ 
Sbjct: 495 KKAAED--QKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELN 552

Query: 244 HLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKEST 303
           HL ++ERMVEIG RWQRI QSQK+H+K  AEE QKQYKV LDLW+K+LSP++ AAYKE  
Sbjct: 553 HLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYI 612

Query: 304 YAKGKNMAMTGGPDPRLKQADPQSSSA-------------KGLQEGFGEGQGLQAAGTDS 350
             K K+M    GP+P+  +   QS S              +  +E   E       G DS
Sbjct: 613 SNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS 672

Query: 351 SQTIWVNCHVSMEPEENRKKDREKE-------------ESSNSSDCSSGEEIEVD 392
           S++   +   S + +EN + D +++             E S+SS  SSG+  + D
Sbjct: 673 SES--SSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 725


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score =  280 bits (716), Expect = 2e-75
 Identities = 155/367 (42%), Positives = 221/367 (60%), Gaps = 42/367 (11%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MA P+ Q  WS +D+L LLECM+NN PS+D+S F +T+SHMDW KVAFK+FSG+MC+LKW
Sbjct: 13  MAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKLKW 72

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           +EIS  +RKF TL EL+L+A++ VK   K +K +  PDFPK+PLT Y RFF E   +Y++
Sbjct: 73  VEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAK 132

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
           ++P M + +LTKILSKKY+ELPE+ K KYIQDF++EKQEFE  LARFRE+HPDL+Q AKK
Sbjct: 133 LHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 192

Query: 181 SSVSKR------------------------TQNKVQKKFQKNIEE----VRSLPKTDRFF 212
           S + ++                         ++ +QK  + NI E      +L K +R  
Sbjct: 193 SDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAERQL 252

Query: 213 KKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQ 272
           K  KF G P KPP N Y  +  +  ++  M+ +   ERMV   ++W+ + Q +KD +  +
Sbjct: 253 KD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKK 309

Query: 273 AEELQKQYKVKLDLWLKTLSPENYAAY-----------KESTYAKGKNMAMTGGPDPRLK 321
            ++ +K Y+V+L  +L++L  E                K++T    K  A  GG     K
Sbjct: 310 CDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEK 369

Query: 322 QADPQSS 328
              P S+
Sbjct: 370 PKRPVSA 376



 Score =  187 bits (474), Expect = 2e-47
 Identities = 136/415 (32%), Positives = 204/415 (49%), Gaps = 75/415 (18%)

Query: 49  KNFSGEMCR-LKWLEISCNLRKFGTLKELVLEAKKCVKKMNKSQKY---RNGPDFPKRPL 104
           K++  E+ R L+ L      R  G  K L +  K+     +K       + G + PKRP+
Sbjct: 315 KDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPV 374

Query: 105 TAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKY--------IQDFRKE 156
           +A   F +E   Q  +  P +   ELT++L++ + +L E+ K KY         Q  RK 
Sbjct: 375 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKP 434

Query: 157 KQEFEEK----------------------LARFREEHP-----------DLVQKAKKSSV 183
             E EE+                      LARF+ +             ++ +K K   +
Sbjct: 435 GGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWI 494

Query: 184 SKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQ 243
            K  ++  QK++++ + E+R+ P      KK+KF GEP+KPPMNGY KF Q+  S+ E+ 
Sbjct: 495 KKAAED--QKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELN 552

Query: 244 HLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKEST 303
           HL ++ERMVEIG RWQRI QSQK+H+K  AEE QKQYKV LDLW+K+LSP++ AAYKE  
Sbjct: 553 HLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYI 612

Query: 304 YAKGKNMAMTGGPDPRLKQADPQSSSA-------------KGLQEGFGEGQGLQAAGTDS 350
             K K+M    GP+P+  +   QS S              +  +E   E       G DS
Sbjct: 613 SNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS 672

Query: 351 SQTIWVNCHVSMEPEENRKKDREKE-------------ESSNSSDCSSGEEIEVD 392
           S++   +   S + +EN + D +++             E S+SS  SSG+  + D
Sbjct: 673 SES--SSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 725


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score =  254 bits (649), Expect = 9e-68
 Identities = 153/404 (37%), Positives = 217/404 (53%), Gaps = 79/404 (19%)

Query: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
           MA P+ Q  WS +D+L LLECM+NN PS+D+S F +T+SHMDW KVAFK+FSG+MC+LKW
Sbjct: 13  MAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKLKW 72

Query: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
           +EIS  +RKF TL EL+L+A++ VK   K +K +  PDFPK+PLT Y RFF E   +Y++
Sbjct: 73  VEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAK 132

Query: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHP-------- 172
           ++P M + +LTKILSKKY+ELPE+ K KYIQDF++EKQEFE  LARFRE+HP        
Sbjct: 133 LHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 192

Query: 173 ---------------------------DLVQKAKKSSVSKR------------------- 186
                                      D   K  K S+ K+                   
Sbjct: 193 SDIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQ 252

Query: 187 -------TQNKVQKKFQKNIEEV----RSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQD 235
                   ++ +QK  + NI E      +L K +R  K  KF G P KPP N Y  +  +
Sbjct: 253 RKEYEEIMRDYIQKHPELNISEEGITKSTLTKAERQLKD-KFDGRPTKPPPNSYSLYCAE 311

Query: 236 SWSSKEMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPEN 295
             ++  M+ +   ERMV   ++W+ + Q +KD +  + ++ +K Y+V+L  +L++L  E 
Sbjct: 312 LMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEE 369

Query: 296 YAAY-----------KESTYAKGKNMAMTGGPDPRLKQADPQSS 328
                          K++T    K  A  GG     K   P S+
Sbjct: 370 QQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSA 413



 Score =  187 bits (474), Expect = 2e-47
 Identities = 136/415 (32%), Positives = 204/415 (49%), Gaps = 75/415 (18%)

Query: 49  KNFSGEMCR-LKWLEISCNLRKFGTLKELVLEAKKCVKKMNKSQKY---RNGPDFPKRPL 104
           K++  E+ R L+ L      R  G  K L +  K+     +K       + G + PKRP+
Sbjct: 352 KDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPV 411

Query: 105 TAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKY--------IQDFRKE 156
           +A   F +E   Q  +  P +   ELT++L++ + +L E+ K KY         Q  RK 
Sbjct: 412 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKP 471

Query: 157 KQEFEEK----------------------LARFREEHP-----------DLVQKAKKSSV 183
             E EE+                      LARF+ +             ++ +K K   +
Sbjct: 472 GGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWI 531

Query: 184 SKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQ 243
            K  ++  QK++++ + E+R+ P      KK+KF GEP+KPPMNGY KF Q+  S+ E+ 
Sbjct: 532 KKAAED--QKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELN 589

Query: 244 HLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKEST 303
           HL ++ERMVEIG RWQRI QSQK+H+K  AEE QKQYKV LDLW+K+LSP++ AAYKE  
Sbjct: 590 HLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYI 649

Query: 304 YAKGKNMAMTGGPDPRLKQADPQSSSA-------------KGLQEGFGEGQGLQAAGTDS 350
             K K+M    GP+P+  +   QS S              +  +E   E       G DS
Sbjct: 650 SNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS 709

Query: 351 SQTIWVNCHVSMEPEENRKKDREKE-------------ESSNSSDCSSGEEIEVD 392
           S++   +   S + +EN + D +++             E S+SS  SSG+  + D
Sbjct: 710 SES--SSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762


>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
          Length = 246

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 46/189 (24%), Positives = 97/189 (51%), Gaps = 21/189 (11%)

Query: 100 PKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQE 159
           PK+P+++Y RF KE  P +    P  ++ EL + +++++RELP+  K+ Y   +R E Q 
Sbjct: 50  PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109

Query: 160 FEEKLARFREE-HPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFH 218
           ++E+++RF+E+  P  +   +K  + K  + K   K                  K++   
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTK-----------------KKELTLL 152

Query: 219 GEPQKPPMNGYHKFHQDSWSSKEMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQK 278
           G+P K P + Y+ +  + +  +E +  S +E++  +   W+ +  S+K+ +   A+E + 
Sbjct: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209

Query: 279 QYKVKLDLW 287
           +Y  ++  W
Sbjct: 210 RYHNEMKSW 218



 Score = 35.4 bits (80), Expect = 0.090
 Identities = 38/177 (21%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 223 KPPMNGYHKFHQDSWSSKEMQHLSVR--ERMVEIGRRWQRIPQSQKDHFKSQAEELQKQY 280
           K P++ Y +F ++     + Q+   +  E +  I +RW+ +P S+K  ++       + Y
Sbjct: 51  KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110

Query: 281 KVKLDLWLKTLSPENYAAYKESTYAKG-KNMAMTGGPDPRL--KQADPQSSSAKGLQEGF 337
           K ++  + + L+P    + ++    K  K  AMT   +  L  K   P+S+    + E F
Sbjct: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF 170

Query: 338 GEGQGLQAAGTDSSQTIWVNC-HVSMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
            E +G   +  +  +T+  N  ++S   +E   +  +++E+   ++  S EE  ++V
Sbjct: 171 QEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 225


>gi|83715964 high-mobility group 20B [Homo sapiens]
          Length = 317

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 97  PDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKE 156
           P+ PK P+T Y RF  E   Q    +P +   E+TK+L  ++ +L    KQ+Y+ +  +E
Sbjct: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126

Query: 157 KQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKK 194
           KQ++ ++L  +++       +A K    K  + K++K+
Sbjct: 127 KQQYMKELRAYQQ------SEAYKMCTEKIQEKKIKKE 158



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 213 KKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQH--LSVRERMVEIGRRWQRIPQSQKDHFK 270
           K+ K      K P+ GY +F  +       +H  L   E    +G  W ++  ++K  + 
Sbjct: 61  KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120

Query: 271 SQAEELQKQYKVKL 284
            +AE  ++QY  +L
Sbjct: 121 DEAEREKQQYMKEL 134


>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin e1 [Homo sapiens]
          Length = 411

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 97  PDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKE 156
           P  P +PL  Y R+ ++ W Q     P ++  E+ KI+   +R+L ++ KQ+Y+ ++  E
Sbjct: 63  PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122

Query: 157 KQEFEEKLARFREEHPDLVQKAKKSSV-------SKRTQNKVQK 193
           K E+ E +  +      L     KS         S++ Q++++K
Sbjct: 123 KIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEK 166


>gi|226246533 TOX high mobility group box family member 3 isoform 2
           [Homo sapiens]
          Length = 571

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K     +K +  P+ P++P++AY  FF+++        P     E++KI++  +  L E+
Sbjct: 235 KPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEE 294

Query: 145 MKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQK 193
            KQ Y +     K+E+ + LA +R     LV KA   S   +T   VQ+
Sbjct: 295 QKQVYKRKTEAAKKEYLKALAAYR---ASLVSKAAAESAEAQTIRSVQQ 340


>gi|226054295 TOX high mobility group box family member 3 isoform 1
           [Homo sapiens]
          Length = 576

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K     +K +  P+ P++P++AY  FF+++        P     E++KI++  +  L E+
Sbjct: 240 KPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEE 299

Query: 145 MKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQK 193
            KQ Y +     K+E+ + LA +R     LV KA   S   +T   VQ+
Sbjct: 300 QKQVYKRKTEAAKKEYLKALAAYR---ASLVSKAAAESAEAQTIRSVQQ 345


>gi|8922633 high-mobility group 20A [Homo sapiens]
          Length = 347

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 86  KMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQM 145
           K  K +K     + PK PLT Y RF  E   Q     P +   E+T++L  ++ +LP + 
Sbjct: 89  KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148

Query: 146 KQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSV-SKRTQNKVQKK 194
           KQ+Y+ +  ++K+ + ++L ++        QK +   V S++TQ++ + K
Sbjct: 149 KQRYLDEADRDKERYMKELEQY--------QKTEAYKVFSRKTQDRQKGK 190



 Score = 35.4 bits (80), Expect = 0.090
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 171 HPDLVQKAKKSSV-SKRTQNKVQKKFQKNIEEVRSLP---KTDRFFKKVKFHGEPQKPPM 226
           +P+ V+   +  +    + N  +   Q++ +E RS        R  KK        K P+
Sbjct: 48  NPEFVEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPL 107

Query: 227 NGYHKFHQDSWSSKEMQHLSVR--ERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKL 284
            GY +F  +       +   V   E    +G  W ++P  +K  +  +A+  +++Y  +L
Sbjct: 108 TGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKEL 167

Query: 285 DLWLKTLSPENYAAYKESTYAKGK 308
           + + KT   E Y  +   T  + K
Sbjct: 168 EQYQKT---EAYKVFSRKTQDRQK 188


>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)

Query: 38  QSHMDWGKVAFKNFSGEMCRLKWLEISCNLR-KFGTLKEL-----VLEAKKCVKKMNKSQ 91
           + H D   V F  FS + C  +W  +S   + KF  + +        E K  +    +++
Sbjct: 29  KKHPD-ASVNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK 86

Query: 92  KYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQ 151
           K    P+ PKRP +A+  F  E  P+    +PG+   ++ K L + +       KQ Y +
Sbjct: 87  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEK 146

Query: 152 DFRKEKQEFEEKLARFREE-HPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
              K K+++E+ +A +R +  PD    A K  V K  ++K +K+ +++ E+
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGKPD----AAKKGVVKAEKSKKKKEEEEDEED 193



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 61/250 (24%)

Query: 143 EQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEV 202
           E+ K+K+  D      EF +K +  R +     +K K   ++K  + + +++ +  I   
Sbjct: 25  EEHKKKH-PDASVNFSEFSKKCSE-RWKTMSAKEKGKFEDMAKADKARYEREMKTYI--- 79

Query: 203 RSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQH--LSVRERMVEIGRRWQR 260
              P      KK K    P++PP + +  F  +     + +H  LS+ +   ++G  W  
Sbjct: 80  ---PPKGETKKKFKDPNAPKRPP-SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 135

Query: 261 IPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGKNMAMTGGPDPRL 320
                K  ++ +A +L+++Y+            ++ AAY+    AKGK       PD   
Sbjct: 136 TAADDKQPYEKKAAKLKEKYE------------KDIAAYR----AKGK-------PDAAK 172

Query: 321 KQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHVSMEPEENRKKDREKEESSNS 380
           K       S K  +E                           E +E  ++D E+EE    
Sbjct: 173 KGVVKAEKSKKKKEE---------------------------EEDEEDEEDEEEEEDEED 205

Query: 381 SDCSSGEEIE 390
            D    ++ E
Sbjct: 206 EDEEEDDDDE 215


>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 488

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 46  VAFKNFSGEMCRLKWLEISCNLR-KFGTLK------------ELVLEAKKCVKKMNKSQK 92
           V F  FS + C  +W  +S   + KFG  +                E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 93  YRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQD 152
               P+ PKRP +A+  +F E  P+     PG+   ++ K L + +       KQ Y + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 153 FRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
             K K+++E+ +A +R +       A  + V K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYRAKGK---HDAANNGVVKAAKSKKKKEEEENEED 329


>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 487

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 46  VAFKNFSGEMCRLKWLEISCNLR-KFGTLK------------ELVLEAKKCVKKMNKSQK 92
           V F  FS + C  +W  +S   + KFG  +                E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 93  YRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQD 152
               P+ PKRP +A+  +F E  P+     PG+   ++ K L + +       KQ Y + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 153 FRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
             K K+++E+ +A +R +       A  + V K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYRAKGK---HDAANNGVVKAAKSKKKKEEEENEED 329


>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 486

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 46  VAFKNFSGEMCRLKWLEISCNLR-KFGTLK------------ELVLEAKKCVKKMNKSQK 92
           V F  FS + C  +W  +S   + KFG  +                E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 93  YRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQD 152
               P+ PKRP +A+  +F E  P+     PG+   ++ K L + +       KQ Y + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 153 FRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
             K K+++E+ +A +R +       A  + V K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYRAKGK---HDAANNGVVKAAKSKKKKEEEENEED 329


>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
          Length = 621

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 68  RKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRS 127
           R+  + K +V+EA K  K   K +K    P+ P++P++AY  FF+++        P    
Sbjct: 193 RQLPSQKTVVVEAGKKQKAPKKRKK--KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATF 250

Query: 128 QELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFRE 169
            E++KI++  +  L E+ KQ Y +     K+E+ + LA +++
Sbjct: 251 GEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKD 292


>gi|7662322 thymus high mobility group box protein TOX [Homo
           sapiens]
          Length = 526

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K     +K +  P+ P++P++AY  FF+++        P     E++KI++  +  L E+
Sbjct: 246 KPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEE 305

Query: 145 MKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQ 192
            KQ Y +     K+E+ ++LA +R     LV K+    V  +T    Q
Sbjct: 306 QKQVYKKKTEAAKKEYLKQLAAYR---ASLVSKSYSEPVDVKTSQPPQ 350


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 38  QSHMDWGKVAFKNFSGEMCRLKWLEISCNLR-KFGTLKE-----LVLEAKKCVKKMNKSQ 91
           + H D   V F  FS + C  +W  +S   + KF  + +        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 92  KYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQ 151
             +  P+ PKRP +A+  F  E  P+    +PG+   +  K L + + E   + KQ Y Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 152 DFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
              K K+++E+ +A +R +      +A K    + T +K + + +   EE
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGK---SEAGKKGPGRPTGSKKKNEPEDEEEE 193



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 54/225 (24%)

Query: 94  RNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDF 153
           +  P+ P+  +++Y  F +    ++ + +P           S  + E  ++  +++    
Sbjct: 3   KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDS---------SVNFAEFSKKCSERWKTMS 53

Query: 154 RKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFK 213
            KEK +FE+            + K+ K+   +  +N V              PK D+  K
Sbjct: 54  AKEKSKFED------------MAKSDKARYDREMKNYVP-------------PKGDKKGK 88

Query: 214 KVKFHGEPQKPPMNGYHKFHQDSWSSKEMQH--LSVRERMVEIGRRWQRIPQSQKDHFKS 271
           K K    P++PP + +  F  +     + +H  LS+ +   ++G  W       K  ++ 
Sbjct: 89  K-KDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 272 QAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGKNMAMTGGP 316
           +A +L+++Y+            ++ AAY+    AKGK+ A   GP
Sbjct: 147 KAAKLKEKYE------------KDIAAYR----AKGKSEAGKKGP 175


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 38  QSHMDWGKVAFKNFSGEMCRLKWLEISCNLR-KFGTLKE-----LVLEAKKCVKKMNKSQ 91
           + H D   V F  FS + C  +W  +S   + KF  + +        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 92  KYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQ 151
             +  P+ PKRP +A+  F  E  P+    +PG+   +  K L + + E   + KQ Y Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 152 DFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
              K K+++E+ +A +R +      +A K    + T +K + + +   EE
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGK---SEAGKKGPGRPTGSKKKNEPEDEEEE 193



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 54/225 (24%)

Query: 94  RNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDF 153
           +  P+ P+  +++Y  F +    ++ + +P           S  + E  ++  +++    
Sbjct: 3   KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDS---------SVNFAEFSKKCSERWKTMS 53

Query: 154 RKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFK 213
            KEK +FE+            + K+ K+   +  +N V              PK D+  K
Sbjct: 54  AKEKSKFED------------MAKSDKARYDREMKNYVP-------------PKGDKKGK 88

Query: 214 KVKFHGEPQKPPMNGYHKFHQDSWSSKEMQH--LSVRERMVEIGRRWQRIPQSQKDHFKS 271
           K K    P++PP + +  F  +     + +H  LS+ +   ++G  W       K  ++ 
Sbjct: 89  K-KDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 272 QAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGKNMAMTGGP 316
           +A +L+++Y+            ++ AAY+    AKGK+ A   GP
Sbjct: 147 KAAKLKEKYE------------KDIAAYR----AKGKSEAGKKGP 175


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 38  QSHMDWGKVAFKNFSGEMCRLKWLEISCNLR-KFGTLKE-----LVLEAKKCVKKMNKSQ 91
           + H D   V F  FS + C  +W  +S   + KF  + +        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 92  KYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQ 151
             +  P+ PKRP +A+  F  E  P+    +PG+   +  K L + + E   + KQ Y Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 152 DFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
              K K+++E+ +A +R +      +A K    + T +K + + +   EE
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGK---SEAGKKGPGRPTGSKKKNEPEDEEEE 193



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 54/225 (24%)

Query: 94  RNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDF 153
           +  P+ P+  +++Y  F +    ++ + +P           S  + E  ++  +++    
Sbjct: 3   KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDS---------SVNFAEFSKKCSERWKTMS 53

Query: 154 RKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFK 213
            KEK +FE+            + K+ K+   +  +N V              PK D+  K
Sbjct: 54  AKEKSKFED------------MAKSDKARYDREMKNYVP-------------PKGDKKGK 88

Query: 214 KVKFHGEPQKPPMNGYHKFHQDSWSSKEMQH--LSVRERMVEIGRRWQRIPQSQKDHFKS 271
           K K    P++PP + +  F  +     + +H  LS+ +   ++G  W       K  ++ 
Sbjct: 89  K-KDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 272 QAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGKNMAMTGGP 316
           +A +L+++Y+            ++ AAY+    AKGK+ A   GP
Sbjct: 147 KAAKLKEKYE------------KDIAAYR----AKGKSEAGKKGP 175


>gi|149408144 TOX high mobility group box family member 2 isoform a
           [Homo sapiens]
          Length = 506

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K  N  +K +  P+ P++P++AY  FF+++        P     +++KI++  +  L E+
Sbjct: 231 KAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEE 290

Query: 145 MKQKYIQDFRKEKQEFEEKLARFR 168
            KQ Y +     K+E+ + LA +R
Sbjct: 291 QKQAYKRKTEAAKKEYLKALAAYR 314


>gi|149408141 TOX high mobility group box family member 2 isoform c
           [Homo sapiens]
          Length = 464

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K  N  +K +  P+ P++P++AY  FF+++        P     +++KI++  +  L E+
Sbjct: 189 KAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEE 248

Query: 145 MKQKYIQDFRKEKQEFEEKLARFR 168
            KQ Y +     K+E+ + LA +R
Sbjct: 249 QKQAYKRKTEAAKKEYLKALAAYR 272


>gi|14249636 TOX high mobility group box family member 2 isoform c
           [Homo sapiens]
          Length = 464

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 85  KKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQ 144
           K  N  +K +  P+ P++P++AY  FF+++        P     +++KI++  +  L E+
Sbjct: 189 KAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEE 248

Query: 145 MKQKYIQDFRKEKQEFEEKLARFR 168
            KQ Y +     K+E+ + LA +R
Sbjct: 249 QKQAYKRKTEAAKKEYLKALAAYR 272


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 86  KMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQM 145
           K  K +K+++ P+ PKRP  A+  F  E  P+    +PG+   ++ K L+  +       
Sbjct: 756 KGEKKKKFKD-PNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAAD 814

Query: 146 KQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
           KQ Y +   K K+++++ +A +R        K K +S  KR     + K +K  EE
Sbjct: 815 KQFYEKKAAKLKEKYKKDIAAYR-------AKGKPNSAKKRVVKAEKSKKKKEEEE 863



 Score = 35.4 bits (80), Expect = 0.090
 Identities = 54/280 (19%), Positives = 106/280 (37%), Gaps = 67/280 (23%)

Query: 27  PSDDNSTFSSTQSHMDWGKVA-------FKNFSGEMCRLKWLEISCNLRKFGTLKELVLE 79
           P D+N  F  ++  +  G+V        FK  + + C      I    +K+ T +E  +E
Sbjct: 593 PKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKC------IQSEDKKWFTPREFEIE 646

Query: 80  AKKCVKKMNKSQKYRNG------------PDFP----KRPLTAYNRFFKESWPQYSQMYP 123
             +   K  K      G            P+ P    KR L ++N    +   ++ +  P
Sbjct: 647 GDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCEEHKKKNP 706

Query: 124 GMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSV 183
                      S K+ E  ++  + +   F KEK +FE+            + KA K+  
Sbjct: 707 DA---------SVKFSEFLKKCSETWKTIFAKEKGKFED------------MAKADKAHY 745

Query: 184 SKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQ 243
            +  +  +  K +K               KK K    P++PP+  +  F  +     + +
Sbjct: 746 EREMKTYIPPKGEKK--------------KKFKDPNAPKRPPL-AFFLFCSEYRPKIKGE 790

Query: 244 H--LSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYK 281
           H  LS+ + + ++   W     + K  ++ +A +L+++YK
Sbjct: 791 HPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYK 830


>gi|71143137 high-mobility group box 3 [Homo sapiens]
          Length = 200

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 27/113 (23%), Positives = 54/113 (47%)

Query: 89  KSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQK 148
           K  K +  P+ PKRP + +  F  E  P+     PG+   ++ K L + +  L +  KQ 
Sbjct: 82  KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 141

Query: 149 YIQDFRKEKQEFEEKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
           YI    K K+++E+ +A ++ +      K       K+ + + +++ ++  EE
Sbjct: 142 YITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEE 194


>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 15/160 (9%)

Query: 46  VAFKNFSGEMCRLKWLEISCNLR-KFGTLKELVLEAKKCVKKMN---KSQKYRNGPDFPK 101
           V F  FS + C  +W  +S   + KF  + +   +   C ++M    K  K +  P  PK
Sbjct: 33  VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKT--DKVHCDREMKGPAKGGKKKKDPSAPK 89

Query: 102 RPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFE 161
           RP + +  F  E  P+     PG+   ++ K L + +  L +  KQ YI    K K+++E
Sbjct: 90  RPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYE 149

Query: 162 EKLARFREEHPDLVQKAKKSSVSKRTQNKVQKKFQKNIEE 201
           + +A       D   K K    SKR      KK ++  E+
Sbjct: 150 KDVA-------DSKSKGKFDG-SKRPAKVAWKKVEEEDED 181


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,411,555
Number of Sequences: 37866
Number of extensions: 756193
Number of successful extensions: 4365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 942
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.