Guide to the Human Genome
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Name: LOC100293878 Sequence: fasta or formatted (248aa) NCBI GI: 239754590
Description:

PREDICTED: similar to hCG1779533

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         27           1
 C cysteine            3.2          8           1
 D aspartate           1.6          4           1
 E glutamate           0.8          2           1
 F phenylalanine       4.4         11           1
 G glycine             5.6         14           2
 H histidine           1.6          4           1
 I isoleucine          1.2          3           1
 K lysine              1.2          3           1
 L leucine            12.5         31           2
 M methionine          1.2          3           1
 N asparagine          2.8          7           1
 P proline            14.9         37           2
 Q glutamine           9.3         23           2
 R arginine            4.8         12           1
 S serine             13.3         33           2
 T threonine           6.0         15           2
 V valine              2.8          7           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1779533 
LOC729737             0.587   PREDICTED: hypothetical protein 
LOC100131871          0.498   PREDICTED: similar to hCG1779533 
LOC100131871          0.498   PREDICTED: similar to hCG1779533 
LOC100131871          0.498   PREDICTED: similar to hCG1779533 
LOC100294359          0.293   PREDICTED: hypothetical protein 
LOC100129904          0.284   PREDICTED: hypothetical protein 
LOC100129904          0.284   PREDICTED: hypothetical protein 
LOC100129904          0.284   PREDICTED: hypothetical protein 
LOC100129904          0.284   PREDICTED: hypothetical protein 
LOC728417             0.284   PREDICTED: hypothetical protein isoform 2 
LOC728417             0.268   PREDICTED: hypothetical protein 
LOC728417             0.268   PREDICTED: hypothetical protein 
LOC728417             0.268   PREDICTED: hypothetical protein isoform 1 
LOC729218             0.168   PREDICTED: hypothetical protein 
LOC100292470          0.143   PREDICTED: similar to hCG1779533 
LOC100132050          0.139   PREDICTED: similar to hCG1779533 
LOC100132050          0.139   PREDICTED: similar to hCG1779533 
LOC100134105          0.131   PREDICTED: similar to hCG1793472 
LOC100133331          0.129   PREDICTED: hypothetical protein 
LOC100128326          0.129   PREDICTED: hypothetical protein 
LOC100128326          0.129   PREDICTED: hypothetical protein 
LOC100128326          0.129   PREDICTED: hypothetical protein 
LOC730826             0.127   PREDICTED: hypothetical protein 
LOC100132062          0.127   PREDICTED: hypothetical protein 
LOC100133161          0.124   PREDICTED: hypothetical protein 
LOC100132062          0.122   PREDICTED: hypothetical protein 
LOC100132287          0.122   PREDICTED: hypothetical protein 
LOC100287258          0.116   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.116   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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