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Search of human proteins with 219879802
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219879802 hypothetical protein LOC91574 [Homo sapiens] 340 3e-94
gi|22748627 hypothetical protein LOC91574 [Homo sapiens] 340 3e-94
gi|34577120 mitochondrial translational release factor 1 [Homo s... 56 2e-08
gi|166795303 mitochondrial translational release factor 1-like i... 47 6e-06
gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapi... 35 0.023
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 34 0.066
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 33 0.11
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 33 0.11
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.19
gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens] 32 0.19
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 32 0.25
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.33
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 32 0.33
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 31 0.43
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 31 0.43
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 31 0.43
gi|19557702 surfeit 6 [Homo sapiens] 31 0.43
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 31 0.56
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H... 31 0.56
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 31 0.56
gi|4505257 moesin [Homo sapiens] 31 0.56
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 31 0.56
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 31 0.56
gi|40254924 leucine rich repeat containing 59 [Homo sapiens] 31 0.56
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 31 0.56
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 31 0.56
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 30 0.73
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 30 0.73
>gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 340 bits (872), Expect = 3e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
Sbjct: 1 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
Query: 61 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
Sbjct: 61 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
Query: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
>gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 340 bits (872), Expect = 3e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
Sbjct: 1 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
Query: 61 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
Sbjct: 61 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
Query: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 55.8 bits (133), Expect = 2e-08
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
+ LD +L + G GGQ NKT + V L HIP+G+VV+C Q RS +N+++A ++L
Sbjct: 293 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVL 352
Query: 113 QEKVDVFYNGENSPVHKEKR--EAAKKKQERKKRAKETL 149
+ ++ + K+KR ++A+K Q + E +
Sbjct: 353 RARL------YQQIIEKDKRQQQSARKLQVGTRAQSERI 385
>gi|166795303 mitochondrial translational release factor 1-like
isoform a [Homo sapiens]
Length = 380
Score = 47.4 bits (111), Expect = 6e-06
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
L ++ +L + G GGQ N T + V + H+P+G+V +C Q RS +N++LA L
Sbjct: 232 LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKL 291
Query: 113 QEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149
+ K+ + E KR+ A+K Q K E +
Sbjct: 292 RAKLYSMHLEEEI----NKRQNARKIQIGSKGRSEKI 324
>gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo
sapiens]
Length = 875
Score = 35.4 bits (80), Expect = 0.023
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 56 DENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEK 115
DE E+EE+ K G + TS +K +P+ Q D+ + A + ++
Sbjct: 588 DEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPT-------QFLDRDEEEEDADFLKVKR 640
Query: 116 VDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
+VF G + K ++ K KK+ + E KK++K ++ +KK+
Sbjct: 641 HNVF--GLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKI 688
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 33.9 bits (76), Expect = 0.066
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 107 LARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
L K+ +EK V + K+K+E KKK++ K++ ++ EK+K +E E K+ H
Sbjct: 685 LPEKLFEEKEKV----KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKH 740
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.11
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 126 PVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
P +EK+E K+K+++KK+ K+ +KKK K+ + KK
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKK 138
Score = 31.6 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
E KEK++ KKK+++KK+ K+ +KKK K+ K+
Sbjct: 104 EKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145
Score = 31.2 bits (69), Expect = 0.43
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 86 HIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRA 145
H+P + + + + ++ +K +K ++K + K+K++ K+K++RK++
Sbjct: 93 HLPLHGLPQREEKKEKEKEKKKKKKKKKKKKK---KKKKKKKKKKKKKKKKRKRKRKRKR 149
Query: 146 KETLEKKKLLKELWESSKKVH 166
K ++KK K+ K+H
Sbjct: 150 KRKKKRKKKKKKTGNEGAKIH 170
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.11
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 125 SPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
+PV+K K++ KK++E+KK+ KE ++K +K E KV
Sbjct: 483 APVNKPKKKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKV 523
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 64 FVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKV-DVFYNG 122
F+KG+ K V P +++ ++ D + +++L++ D +
Sbjct: 123 FIKGN-------QKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSS 175
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
+S KEK + KKK++ KKR KE +KKK
Sbjct: 176 SSSSEGKEKHKKKKKKEKHKKRKKEKKKKKK 206
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 124 NSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSK 163
+S E +E KKK++++K K EKKK K +SSK
Sbjct: 174 SSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSK 213
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 99 RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKEL 158
R ++ RK + Q K E + KR+ KKK+ERK+R + +KKK KE
Sbjct: 71 RGKERERKRKEREKQRK-------ERREKERRKRKKEKKKRERKQRGRRERKKKKERKER 123
Query: 159 WESSKK 164
+K+
Sbjct: 124 ERENKQ 129
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 129 KEKREAAKKKQERKKRAKETLEKKK 153
K ++E K++++RKKR KE EKK+
Sbjct: 148 KREKERGKRERKRKKRKKEEREKKR 172
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 99 RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAK----KKQERKKRAKETLEKKK 153
R ++ + RK +EK G+ ++KRE K K++ER+K+ KE EK++
Sbjct: 36 RKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKER 94
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
E +K++RE +KK+ +KKR KE +K+
Sbjct: 122 ERERENKQRRERKRKKRRKKKRRKERKREKE 152
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 102 DQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
++ RK +K +EK N + +E++E ++K+ERKK ++ E+KK
Sbjct: 157 ERKRKKRKKEEREKKRE-RNRKERKKERERKERRERKKERKKERRKKKERKK 207
Score = 27.7 bits (60), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 129 KEKREAAKKKQERKKRAKETLEKKKLLK 156
KE+RE K+K+ER+K K KK+ K
Sbjct: 38 KERREREKRKREREKERKRERGKKEKKK 65
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 32.3 bits (72), Expect = 0.19
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
E KEKR+ +K++E+KK+ KET ++K+ KE E +K
Sbjct: 24 EKEGKRKEKRKEKRKEKEKKKKTKETEKRKE--KEEEEKKRK 63
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 109 RKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
+K ++K + E +E+ + K+K++RK++ KE EKKK KE + +K
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEK-EKKKKTKETEKRKEK 55
Score = 30.0 bits (66), Expect = 0.95
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
+ ++ +K +E+ + E +EK E ++K+++K+R KE E+KK
Sbjct: 63 KRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKK 113
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 105 RKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
RK RK +++ + + + KEK E KK++ ++K+ KE E+++ +E E ++
Sbjct: 29 RKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEE 88
Score = 27.7 bits (60), Expect = 4.7
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESS 162
+ +K +K +E + E +++E K+K++ K++ K+T E +K KE E
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEK-RKEKEEEE 59
Query: 163 KK 164
KK
Sbjct: 60 KK 61
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 102 DQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWES 161
++ +K RK ++K + E +EK E K++ R+K+ +KK+ KE E
Sbjct: 57 EEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKK-----KKKRRRKEEEEE 111
Query: 162 SKK 164
KK
Sbjct: 112 KKK 114
>gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens]
Length = 495
Score = 32.3 bits (72), Expect = 0.19
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 109 RKILQEKVDVFYNGENSPVHKEK-REAAKKKQERKKRAKETLEKKKLLKEL 158
R+ L++ Y E + ++K K +E A+KK ++K K+ E++ LKEL
Sbjct: 313 REDLEQVRQELYQEEQAEIYKSKLKEEAEKKLRKQKEMKQDFEEQMALKEL 363
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 32.0 bits (71), Expect = 0.25
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
E + KEK EAAKK+QE E+++ LKE WE ++
Sbjct: 84 EEFRIKKEKEEAAKKRQE---------EQERKLKEQWEEQQR 116
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 31.6 bits (70), Expect = 0.33
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 78 TSNCVVLKHIPSGIVVKCHQTRSVDQNRKLAR-KILQEKVDVFYNGENSPVHKEKREAAK 136
T V K PS + + + ++ D K A+ K ++++ V + K K+E AK
Sbjct: 603 TEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAK 662
Query: 137 KKQERKKRAKETLEKKKLLKELWESSKK 164
K+ + + +E +K+++ KE+ + KK
Sbjct: 663 KEDKTPIKKEEKPKKEEVKKEVKKEIKK 690
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
+ +P + K+E KK+E+K+ KE E KK +K+L + +KK
Sbjct: 702 KETPPKEVKKEV--KKEEKKEVKKEEKEPKKEIKKLPKDAKK 741
Score = 26.9 bits (58), Expect = 8.0
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 46 KKDYPALL----SLDENEL----EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQ 97
KKD P S+ E E+ E VK QAT+ K + VK
Sbjct: 589 KKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPED 648
Query: 98 TRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKK------KQERKKRAKETLEK 151
+ ++ K +++ +++ E P +E ++ KK K+E KK K+
Sbjct: 649 KK--EEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPP 706
Query: 152 KKLLKELWESSKK 164
K++ KE+ + KK
Sbjct: 707 KEVKKEVKKEEKK 719
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 100 SVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELW 159
S D+ +K ++ ++K + Y S H+ + E+ K+ ++KK++K+ EK+K ++ L
Sbjct: 120 SEDEEKKQGKR-RKKKKNRSYKSSQSSTHESESES-KESVKKKKKSKDETEKEKDVRSLS 177
Query: 160 ESSKK 164
+ KK
Sbjct: 178 KKRKK 182
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 99 RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKK----KQERKKRAKET---LEK 151
R D N+ ++R +EK D E KEK +K K+ERKK++K+ LEK
Sbjct: 720 RIKDTNKDISRSFREEK-DRSNKAEKERSLKEKSPKEEKLRLYKEERKKKSKDRPSKLEK 778
Query: 152 KKLLKE 157
K LKE
Sbjct: 779 KNDLKE 784
Score = 27.3 bits (59), Expect = 6.1
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 128 HKEKR--EAAKKKQERKKRAK-ETLEKKKLLKELWESSKKVH 166
HKEK+ E+ +K ++RK RA ++ + KK ++L E ++K H
Sbjct: 1205 HKEKKDKESTEKYKDRKDRASVDSTQDKKNKQKLPEKAEKKH 1246
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 31.2 bits (69), Expect = 0.43
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
+RE K+++E ++R KE EK+K K E KK
Sbjct: 362 ERERLKRQEEERRRQKERYEKEKTFKRKEEEMKK 395
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 31.2 bits (69), Expect = 0.43
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
+RE K+++E ++R KE EK+K K E KK
Sbjct: 349 ERERLKRQEEERRRQKERYEKEKTFKRKEEEMKK 382
>gi|19557702 surfeit 6 [Homo sapiens]
Length = 361
Score = 31.2 bits (69), Expect = 0.43
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 90 GIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149
G+ + ++D R+ + +QE E SP EKR K++++RKKR ++ L
Sbjct: 103 GLATEPESVFALDVLRQRLHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKEL 162
Query: 150 EKKKLLKELWESSK 163
K+ ++ E+++
Sbjct: 163 RAKEKARKAEEATE 176
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKR-EAAKKKQERKKRAKETLEKKKLL 155
+ +K +K + K D +N P K+K+ + KKK+E K + K+ EKK+++
Sbjct: 172 EEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEVV 225
>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
sapiens]
Length = 690
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKR-EAAKKKQERKKRAKETLEKKKLL 155
+ +K +K + K D +N P K+K+ + KKK+E K + K+ EKK+++
Sbjct: 103 EEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEVV 156
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 0.56
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 97 QTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQER-----KKRAKETLEK 151
QT + + + + K+ QE + +G+ P +E ++ ++++E KKR KE +K
Sbjct: 2 QTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKK 61
Query: 152 KKLLKELWESSKKV 165
K+ +++ E KV
Sbjct: 62 KEATQKVTEQKTKV 75
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 30.8 bits (68), Expect = 0.56
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 129 KEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
K+KRE A+K++E+ +R KE L ++ LK++ E +KK
Sbjct: 327 KKKREMAEKEKEKIEREKEELMER--LKQIEEQTKK 360
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 30.8 bits (68), Expect = 0.56
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 55 LDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQE 114
++++ +EE+ +K G + ++ + K + + +D+ RK K+ +
Sbjct: 1484 MEDDSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGAD 1543
Query: 115 KVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
K + ++K ++ AK+++ +KK+ K K +L+KE E ++
Sbjct: 1544 K--------SKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKRE 1585
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 30.8 bits (68), Expect = 0.56
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 55 LDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQE 114
++++ +EE+ +K G + ++ + K + + +D+ RK K+ +
Sbjct: 1489 MEDDSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGAD 1548
Query: 115 KVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
K + ++K ++ AK+++ +KK+ K K +L+KE E ++
Sbjct: 1549 K--------SKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKRE 1590
>gi|40254924 leucine rich repeat containing 59 [Homo sapiens]
Length = 307
Score = 30.8 bits (68), Expect = 0.56
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 18 PAPWG-LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPG----- 71
PA +G L + L LL+ + PV A K+ L L +N L+ K G
Sbjct: 78 PADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNLK-WLDLKDNPLDPVLAKVAGDCLDEKQ 136
Query: 72 -GQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKE 130
Q NK VL+H+ + DQ R+ R++ E+ + +E
Sbjct: 137 CKQCANK-----VLQHM---------KAVQADQERERQRRLEVER--------EAEKKRE 174
Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSK 163
++ AK+ QER+ R +E E+K+ ++ +++ K
Sbjct: 175 AKQRAKEAQERELRKREKAEEKERRRKEYDALK 207
Score = 30.0 bits (66), Expect = 0.95
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 QNRKLARKILQEKVDVFYNGENSPVHK-EKREAAKKKQERKKRAKETLEKKKLLKELWES 161
Q ++ A K+LQ V + E + E A+KK+E K+RAKE E++ +E E
Sbjct: 136 QCKQCANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQRAKEAQERELRKREKAEE 195
Query: 162 SKK 164
++
Sbjct: 196 KER 198
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 91 IVVKCHQ-----TRSVDQNRKLARK---ILQEKVDVFYNGENSPVHKEKREAAKKKQERK 142
++ KCHQ ++ DQ A K IL +++D+ + E S +++ AAK+++ ++
Sbjct: 1402 LLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREES---RKQALAAKREKRKE 1458
Query: 143 KRAKETLEKKKLLKELWESSKK 164
KR K+ E+K+ +E E+ K
Sbjct: 1459 KRKKKKEEQKRKQEEDEENKPK 1480
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
+ P++K+K E KK +E ++ +KKK+LKEL + +++
Sbjct: 808 QGEPLNKDKIEELKKNRE-----EQVQKKKKILKELQKVERQL 845
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 91 IVVKCHQ-----TRSVDQNRKLARK---ILQEKVDVFYNGENSPVHKEKREAAKKKQERK 142
++ KCHQ ++ DQ A K IL +++D+ + E S +++ AAK+++ ++
Sbjct: 1402 LLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREES---RKQALAAKREKRKE 1458
Query: 143 KRAKETLEKKKLLKELWESSKK 164
KR K+ E+K+ +E E+ K
Sbjct: 1459 KRKKKKEEQKRKQEEDEENKPK 1480
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
+ P++K+K E KK +E ++ +KKK+LKEL + +++
Sbjct: 808 QGEPLNKDKIEELKKNRE-----EQVQKKKKILKELQKVERQL 845
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 30.4 bits (67), Expect = 0.73
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 122 GENSPVHKEKREAAKKKQERKKRAKE-TLEKKKLLKELWESSKKV 165
GE +H EK++ A +KQ+ + + T E KL KEL ++ K++
Sbjct: 509 GEKDALHSEKQQIATEKQDLEAEVSQLTGEVAKLTKELEDAKKEM 553
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 130 EKREAAKKKQERKKRAKETLEKKKLLKE 157
+KR ++K R K AKE EK++L K+
Sbjct: 1144 QKRRETEEKMRRAKLAKEKAEKERLEKQ 1171
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 30.4 bits (67), Expect = 0.73
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 122 GENSPVHKEKREAAKKKQERKKRAKE-TLEKKKLLKELWESSKKV 165
GE +H EK++ A +KQ+ + + T E KL KEL ++ K++
Sbjct: 518 GEKDALHSEKQQIATEKQDLEAEVSQLTGEVAKLTKELEDAKKEM 562
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 130 EKREAAKKKQERKKRAKETLEKKKLLKE 157
+KR ++K R K AKE EK++L K+
Sbjct: 1153 QKRRETEEKMRRAKLAKEKAEKERLEKQ 1180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,113,497
Number of Sequences: 37866
Number of extensions: 342135
Number of successful extensions: 3366
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 702
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.