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Search of human proteins with 219842327
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219842327 microtubule-associated protein, RP/EB family,
member 2 isoform 3 [Homo sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219842327 microtubule-associated protein, RP/EB family, membe... 645 0.0
gi|10346135 microtubule-associated protein, RP/EB family, member... 586 e-167
gi|219842325 microtubule-associated protein, RP/EB family, membe... 578 e-165
gi|10800412 microtubule-associated protein, RP/EB family, member... 344 7e-95
gi|6912494 microtubule-associated protein, RP/EB family, member ... 310 8e-85
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 42 0.001
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 42 0.001
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 42 0.001
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 42 0.001
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 42 0.001
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 42 0.001
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 38 0.013
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 37 0.017
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 37 0.030
gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 37 0.030
gi|18079216 CASK interacting protein 1 [Homo sapiens] 36 0.039
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 36 0.039
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 36 0.051
gi|154426312 SPATS2-like protein isoform b [Homo sapiens] 35 0.066
gi|91208420 bassoon protein [Homo sapiens] 35 0.066
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 35 0.066
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 35 0.087
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 35 0.087
gi|6912584 PFTAIRE protein kinase 1 [Homo sapiens] 35 0.087
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 35 0.11
gi|170784854 PTPRF interacting protein, binding protein 2 (lipri... 35 0.11
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens] 35 0.11
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens] 35 0.11
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.15
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.15
>gi|219842327 microtubule-associated protein, RP/EB family, member 2
isoform 3 [Homo sapiens]
Length = 315
Score = 645 bits (1665), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MKQNRDQKCPVSQRNSSFQQPGRKPGCSSWGMAVNVYSTSITQETMSRHDIIAWVNDIVS 60
MKQNRDQKCPVSQRNSSFQQPGRKPGCSSWGMAVNVYSTSITQETMSRHDIIAWVNDIVS
Sbjct: 1 MKQNRDQKCPVSQRNSSFQQPGRKPGCSSWGMAVNVYSTSITQETMSRHDIIAWVNDIVS 60
Query: 61 LNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDK 120
LNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDK
Sbjct: 61 LNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDK 120
Query: 121 VIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLP 180
VIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLP
Sbjct: 121 VIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLP 180
Query: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQVH 240
KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQVH
Sbjct: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQVH 240
Query: 241 SLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEA 300
SLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEA
Sbjct: 241 SLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEA 300
Query: 301 EEQAHEQQPPQQEEY 315
EEQAHEQQPPQQEEY
Sbjct: 301 EEQAHEQQPPQQEEY 315
>gi|10346135 microtubule-associated protein, RP/EB family, member 2
isoform 1 [Homo sapiens]
Length = 327
Score = 586 bits (1510), Expect = e-167
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 29 SWGMAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCIS 88
SWGMAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCIS
Sbjct: 41 SWGMAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCIS 100
Query: 89 LKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDA 148
LKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDA
Sbjct: 101 LKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDA 160
Query: 149 NYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSR 208
NYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSR
Sbjct: 161 NYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSR 220
Query: 209 PSSAKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQ 268
PSSAKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQ
Sbjct: 221 PSSAKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQ 280
Query: 269 EHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY 315
EHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
Sbjct: 281 EHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY 327
>gi|219842325 microtubule-associated protein, RP/EB family, member 2
isoform 2 [Homo sapiens]
Length = 284
Score = 578 bits (1489), Expect = e-165
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 32 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 91
MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK
Sbjct: 1 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 60
Query: 92 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 151
VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD
Sbjct: 61 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 120
Query: 152 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS 211
GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS
Sbjct: 121 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS 180
Query: 212 AKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHG 271
AKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHG
Sbjct: 181 AKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHG 240
Query: 272 QENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY 315
QENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY
Sbjct: 241 QENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY 284
>gi|10800412 microtubule-associated protein, RP/EB family, member 3
[Homo sapiens]
Length = 281
Score = 344 bits (882), Expect = 7e-95
Identities = 172/289 (59%), Positives = 217/289 (75%), Gaps = 13/289 (4%)
Query: 32 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 91
MAVNVYSTS+T E +SRHD++AWVND + LNYTK+EQLCSGAAYCQFMDMLFPGC+ L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 92 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 151
VKFQAKLEHEYIHNFK+LQA+FK+M VDK+IPVEKLVKG+FQDN +FIQWFKKF+DANYD
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120
Query: 152 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAA-KPGSTPSRPS 210
GK+Y+P+ ARQGQD PPP+PG+QIFN KK TA ++SP K T R S
Sbjct: 121 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKL----IGTAVPQRTSPTGPKNMQTSGRLS 176
Query: 211 SAK----RASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELL 266
+ + SA + + Q+++LN+Q+ LKL ++G+EKERDFYF KLR+IEL+
Sbjct: 177 NVAPPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELI 236
Query: 267 CQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEEY 315
CQEH EN ++ ++ ILYA+EE E+ E EE H+Q+ Q+EY
Sbjct: 237 CQEHESENSPVISGIIGILYATEEGFAPPEDDEIEE--HQQE--DQDEY 281
>gi|6912494 microtubule-associated protein, RP/EB family, member 1
[Homo sapiens]
Length = 268
Score = 310 bits (795), Expect = 8e-85
Identities = 156/282 (55%), Positives = 199/282 (70%), Gaps = 27/282 (9%)
Query: 32 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 91
MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 92 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 151
VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 152 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS 211
GK+YDPV ARQGQ+ P N PKK P + P RP S
Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLTSSSAAPQRPIS 165
Query: 212 AKRASSSGSA-------SKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIE 264
+R +++ A + + + + +L +QV+ LKL +E +EKERDFYFGKLR IE
Sbjct: 166 TQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 225
Query: 265 LLCQEHGQENDDLVQRLMDILYASEE-----HEGHTEEPEAE 301
L+CQE+ END ++QR++DILYA++E EG +E + E
Sbjct: 226 LICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEE 267
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 370 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 425
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 426 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 485
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 486 QKLKETQSKYEE 497
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 359 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 414
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 415 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 474
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 475 QKLKETQSKYEE 486
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 338 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 393
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 394 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 453
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 454 QKLKETQSKYEE 465
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 367 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 422
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 423 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 482
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 483 QKLKETQSKYEE 494
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 367 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 422
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 423 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 482
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 483 QKLKETQSKYEE 494
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 164 QDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK 223
QD + P E +L S+H+ G + KPG T S + + S K
Sbjct: 367 QDKLQAKSPKEAEADLSFDSYHSTQTDLGPS----LGKPGETSPPDSKSSPSVLIHSLGK 422
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKL--REIELLC---QEHGQENDDLV 278
S D + ++ QL E + L+ LE E ER +L R EL+C E + + DL
Sbjct: 423 STTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLS 482
Query: 279 QRLMDILYASEE 290
Q+L + EE
Sbjct: 483 QKLKETQSKYEE 494
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 37.7 bits (86), Expect = 0.013
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 23/171 (13%)
Query: 146 YDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGST 205
+D +Y G + D + A PP P + +P K + T+ KS +K G
Sbjct: 109 FDLDY-GFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSG-- 165
Query: 206 PSRPSSAKRASSSGSASKSD--KDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREI 263
KR SS K D + ++ ++ Q+ ++V SL LE +EKE+ +E+
Sbjct: 166 -------KRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQ-----SKQEV 213
Query: 264 ELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEE 314
E+ + +E + E H E AE+ A E P ++
Sbjct: 214 EVKNAKSEEEQSS------SSMKKDETHVKMESEGGAEDSAEEGDPLDDDD 258
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 37.4 bits (85), Expect = 0.017
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 146 YDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGST 205
+D +Y G + D + A PP P + +P K + T+ KS +K G
Sbjct: 109 FDLDY-GFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSG-- 165
Query: 206 PSRPSSAKRASSSGSASKSD--KDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREI 263
KR SS K D + ++ ++ Q+ ++V SL LE +EKE+ +E+
Sbjct: 166 -------KRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQ-----SKQEV 213
Query: 264 ELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQP 309
E+ + +E + E H E AE+ A E P
Sbjct: 214 EVKNAKSEEEQSS------SSMKKDETHVKMESEGGAEDSAEEGDP 253
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 36.6 bits (83), Expect = 0.030
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 41/144 (28%)
Query: 157 PVEARQGQDAIPPPDP-------------GEQIFNLPKKSHHAN--------SPTAGAAK 195
P QG PPP P G+Q+ +P SH +N +PTA
Sbjct: 1269 PTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVLPAPTAAPGN 1328
Query: 196 SSPAAKPGSTPSRPSSAKRAS----------------SSGSASKSDKDLETQVIQLNEQV 239
+ P S + SS +AS +S +SK+DK L+ Q +
Sbjct: 1329 TGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEASADSSKTDKKLQIQ----EKAA 1384
Query: 240 HSLKLALEGVEKERDFYFGKLREI 263
+KLA++ + +D + +EI
Sbjct: 1385 QEVKLAIKPFYQNKDITKEEYKEI 1408
>gi|29294627 PTPRF interacting protein binding protein 1 isoform 1
[Homo sapiens]
Length = 1005
Score = 36.6 bits (83), Expect = 0.030
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQE 269
S LETQ + L ++ +LKL L VEK+R Y K R+ E L QE
Sbjct: 161 SRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQE 206
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 36.2 bits (82), Expect = 0.039
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 163 GQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSAS 222
G PP PG ++P K A + A AA + PA G++P + K +S +
Sbjct: 1322 GASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLA 1381
Query: 223 KSDKDLETQVIQLNEQ 238
+ + +E ++ Q + Q
Sbjct: 1382 AALQAVEEKIRQEDAQ 1397
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 36.2 bits (82), Expect = 0.039
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 28/127 (22%)
Query: 195 KSSPAAKPGSTPSRPSSAKRASSS-----GSASKSDKDLETQVIQLNEQV---HSLKLAL 246
K AA+P ++P+ S K+A SS K K+L+ Q +Q+N+++ H LK L
Sbjct: 2862 KQRSAAQPSTSPAEVQSLKKAMSSLQNDRDRLLKELKNLQQQYLQINQEITELHPLKAQL 2921
Query: 247 EGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEEHEGHTEEPEAEE-QAH 305
+ Y K + +++ +E QEN S +HE H E + H
Sbjct: 2922 QE-------YQDKTKAFQIMQEELRQEN------------LSWQHELHQLRMEKSSWEIH 2962
Query: 306 EQQPPQQ 312
E++ +Q
Sbjct: 2963 ERRMKEQ 2969
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 35.8 bits (81), Expect = 0.051
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 192 GAAKSSPAAKPGSTPSR-----PSSAKRASSSGSASKSDK----DLETQVIQLNEQVHSL 242
G AK S A+PG+TPSR PS A GS S++ + V+Q + +
Sbjct: 1726 GKAKGSLRAEPGATPSRDALFNPSRAFACREEGSQLASERLKRATRKGTVLQPVLRRKNG 1785
Query: 243 KLALEGVEKERDFYFGKLREIELLCQEHGQENDD-LVQRLMDILYASEEHE-----GHTE 296
L++ + GK R++ + + G++ V RL++ E+ E +E
Sbjct: 1786 ALSITLATRNAKAILGKGRKLSKVKHKAGKQGKGRAVSRLLESFAVEEDFEFDDNSSFSE 1845
Query: 297 EPEAEEQAHEQQPPQQEE 314
E E EE+ E P E
Sbjct: 1846 EEEDEEEEEEDSGPLSAE 1863
>gi|154426312 SPATS2-like protein isoform b [Homo sapiens]
Length = 489
Score = 35.4 bits (80), Expect = 0.066
Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 144 KFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPG 203
K + N D K D VE + P P QI N P +S + +A PA P
Sbjct: 76 KQHQGNKDAK--DKVERPEAGPLQPQPP---QIQNGPMNGCEKDSSSTDSANEKPALIPR 130
Query: 204 ----STPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGK 259
S PS A R + + KS KDL+ + L +K ++ K+ F +
Sbjct: 131 EKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAE 190
Query: 260 L------REIELLCQEHGQENDDLVQRLMDILYASEE 290
L +E+ L+ E D + + M+IL A ++
Sbjct: 191 LHNCIIDKEVSLMA-----EMDKVKEEAMEILTARQK 222
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.4 bits (80), Expect = 0.066
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 179 LPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASK---SDKDLETQVIQL 235
LP + A AGA +P A G P P+ A SG+ S+ ++ + Q
Sbjct: 2311 LPTTTPAAIKEAAGAPAPAPLA--GQKP--PADAAPGGGSGALSRPGFEKEEASQEERQR 2366
Query: 236 NEQVHSLKLALEGVEKERDFYFGKLREIE---LLCQEHGQENDDLVQRLMDILYASEEH- 291
+Q L+L E VE E+ E+E + Q H +E LVQR + L + H
Sbjct: 2367 KQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQRELQELQTIKHHV 2426
Query: 292 -EGHTEEPEAEEQAHEQQPPQQ 312
+ EE +A+ +Q QQ
Sbjct: 2427 LQQQQEERQAQFALQREQLAQQ 2448
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 35.4 bits (80), Expect = 0.066
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 20/165 (12%)
Query: 154 EYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAA--KSSPAAKPGSTPSRPSS 211
E PV+ G+ I PP+ P K P A K GS S
Sbjct: 1151 EMKPVDV--GRPVIRPPEQNAPPPGAPDKDKQKQEPKTPVAPKKDLKIKNMGSWASLVQK 1208
Query: 212 AKRASSSGSASKSD--KDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQE 269
SS + S SD + + E+ +LK E EKE++ +LR+ +
Sbjct: 1209 HPTTPSSTAKSSSDSFEQFRRAAREKEEREKALKAQAEHAEKEKE----RLRQERM---- 1260
Query: 270 HGQENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQEE 314
+E++D +++ A HE E ++Q ++Q QQ++
Sbjct: 1261 RSREDEDALEQ------ARRAHEEARRRQEQQQQQRQEQQQQQQQ 1299
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 35.0 bits (79), Expect = 0.087
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVI 233
K + ++P G K +PAAK G P + A + + +K+ K LET+ I
Sbjct: 530 KDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEI 582
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 35.0 bits (79), Expect = 0.087
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVI 233
K + ++P G K +PAAK G P + A + + +K+ K LET+ I
Sbjct: 530 KDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEI 582
>gi|6912584 PFTAIRE protein kinase 1 [Homo sapiens]
Length = 451
Score = 35.0 bits (79), Expect = 0.087
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 171 DPGEQIFNLPKKSHHANSP-----TAGAAKSSPAAKPGSTPSRPSSAK--RASSSGSASK 223
DP E+ N K+ H N+ T+ K SP + S+PS P+S K +A S K
Sbjct: 63 DPFEKPANQVKRVHSENNACINFKTSSTGKESPKVRRHSSPSSPTSPKFGKADSYEKLEK 122
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGV--EKERDFYFGKLREIELLCQEHGQENDDLVQRL 281
+ V + +V+ +AL+ + ++E F +RE LL G ++ ++V L
Sbjct: 123 LGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLL---KGLKHANIV-LL 178
Query: 282 MDILYASE 289
DI++ E
Sbjct: 179 HDIIHTKE 186
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 213 KRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQ 272
KRASS+ A+ DKD V Q+ L +E +E+ER+ L L ++ Q
Sbjct: 343 KRASSAYLAAAEDKDRLELVRHKVRQIAELGRRVEALEQERE----SLAHTASLREQQVQ 398
Query: 273 ENDDLVQRLMDILYASEEHEGHTEEPEAEEQAHEQQPPQQ 312
E VQ LMD +A ++ E ++ H PP Q
Sbjct: 399 ELQQHVQLLMDKNHAKQQVICKLSEKVTQDFTH---PPDQ 435
>gi|170784854 PTPRF interacting protein, binding protein 2 (liprin
beta 2) [Homo sapiens]
Length = 876
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 224 SDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMD 283
S LETQ + L +V LKL L G+EKE+ RE E E ++ ++L+Q L
Sbjct: 166 SRTSLETQKLDLMTEVSELKLKLVGMEKEQ-------REQE----EKQRKAEELLQELRH 214
Query: 284 ILYASEEHEGHTEEPEAEEQAHEQQPPQQEE 314
+ EE E + E + +A + + Q +E
Sbjct: 215 LKIKVEELENERNQYEWKLKATKAEVAQLQE 245
>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
Length = 1471
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRA-------SSSGSASKSDKDLETQVI 233
K H+ ++ + SP+ G TPSR +S++ + S G S S D +T+ +
Sbjct: 1047 KLLHNHLKNSSNTSVGSPSNTIGRTPSRHTSSRTSPLTSPTNCSHGGLSPSMLDYDTENL 1106
Query: 234 QLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQR 280
E SL+ E +EK F F ++ + G++ D+V R
Sbjct: 1107 NSEEIYSSLRGVTEAIEK---FSFRSQEDLNEPIKRDGKKECDIVSR 1150
>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
Length = 1479
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 181 KKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRA-------SSSGSASKSDKDLETQVI 233
K H+ ++ + SP+ G TPSR +S++ + S G S S D +T+ +
Sbjct: 1055 KLLHNHLKNSSNTSVGSPSNTIGRTPSRHTSSRTSPLTSPTNCSHGGLSPSMLDYDTENL 1114
Query: 234 QLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQR 280
E SL+ E +EK F F ++ + G++ D+V R
Sbjct: 1115 NSEEIYSSLRGVTEAIEK---FSFRSQEDLNEPIKRDGKKECDIVSR 1158
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 34.3 bits (77), Expect = 0.15
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 168 PPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKD 227
PPP P ++ P +S P A SS ++ S+ S SS+ +SSS A K D
Sbjct: 68 PPPQPPPPQYDYPPQS--TFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPP 125
Query: 228 L 228
L
Sbjct: 126 L 126
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 34.3 bits (77), Expect = 0.15
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 168 PPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKD 227
PPP P ++ P +S P A SS ++ S+ S SS+ +SSS A K D
Sbjct: 68 PPPQPPPPQYDYPPQS--TFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPP 125
Query: 228 L 228
L
Sbjct: 126 L 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,603,074
Number of Sequences: 37866
Number of extensions: 652849
Number of successful extensions: 5481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 5012
Number of HSP's gapped (non-prelim): 629
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.