Guide to the Human Genome
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Name: PPFIBP2 Sequence: fasta or formatted (876aa) NCBI GI: 170784854
Description:

PTPRF interacting protein, binding protein 2 (liprin beta 2)

Referenced in:

Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         61           2
 C cysteine            1.1         10           1
 D aspartate           5.1         45           2
 E glutamate           9.7         85           3
 F phenylalanine       2.3         20           1
 G glycine             5.8         51           2
 H histidine           3.0         26           2
 I isoleucine          3.4         30           2
 K lysine              6.7         59           3
 L leucine            12.3        108           3
 M methionine          2.2         19           1
 N asparagine          3.1         27           1
 P proline             5.8         51           3
 Q glutamine           5.4         47           2
 R arginine            5.9         52           2
 S serine              7.6         67           2
 T threonine           5.8         51           3
 V valine              4.6         40           2
 W tryptophan          1.4         12           1
 Y tyrosine            1.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PTPRF interacting protein, binding protein 2 (lipri... 
PPFIBP1               0.387   PTPRF interacting protein binding protein 1 isoform ...
PPFIA1                0.084   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.084   PTPRF interacting protein alpha 1 isoform b 
KIAA1026              0.083   kazrin isoform E 
PPFIBP1               0.078   PTPRF interacting protein binding protein 1 isoform ...
PPFIA2                0.072   PTPRF interacting protein alpha 2 
PPFIA3                0.071   PTPRF interacting protein alpha 3 
PPFIA4                0.065   protein tyrosine phosphatase, receptor type, f polyp...
MYH9                  0.026   myosin, heavy polypeptide 9, non-muscle 
MYH7B                 0.021   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
GOLGB1                0.021   golgi autoantigen, golgin subfamily b, macrogolgin ...
PCNT                  0.021   pericentrin 
GOLGA3                0.021   Golgi autoantigen, golgin subfamily a, 3 
MYH3                  0.020   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.020   myosin, heavy polypeptide 10, non-muscle 
MYH15                 0.020   myosin, heavy polypeptide 15 
CCDC41                0.020   NY-REN-58 antigen 
CCDC41                0.020   NY-REN-58 antigen 
CEP250                0.020   centrosomal protein 2 
CCDC18                0.020   sarcoma antigen NY-SAR-41 
CCDC158               0.020   coiled-coil domain containing 158 
MYH8                  0.020   myosin, heavy chain 8, skeletal muscle, perinatal [...
PPL                   0.020   periplakin 
MYH6                  0.019   myosin heavy chain 6 
MYO18A                0.019   myosin 18A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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