Guide to the Human Genome
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Name: CTAGE4 Sequence: fasta or formatted (777aa) NCBI GI: 193290160
Description:

CTAGE family, member 4

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         45           3
 C cysteine            0.8          6           1
 D aspartate           5.0         39           3
 E glutamate          11.8         92           4
 F phenylalanine       3.6         28           2
 G glycine             5.0         39           4
 H histidine           2.1         16           1
 I isoleucine          3.6         28           3
 K lysine              6.8         53           2
 L leucine            10.8         84           2
 M methionine          2.2         17           2
 N asparagine          4.4         34           1
 P proline             8.5         66           5
 Q glutamine           4.2         33           2
 R arginine            6.0         47           2
 S serine              8.6         67           2
 T threonine           4.1         32           2
 V valine              3.6         28           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CTAGE family, member 4 
LOC643854             0.989   hypothetical protein LOC643854 
LOC441294             0.964   hypothetical protein LOC441294 
CTAGE6                0.961   CTAGE family, member 6 
CTAGE5                0.826   CTAGE family, member 5 isoform 1 
CTAGE5                0.801   CTAGE family, member 5 isoform 2 
CTAGE5                0.792   CTAGE family, member 5 isoform 4 
CTAGE5                0.767   CTAGE family, member 5 isoform 3 
CTAGE1                0.721   cutaneous T-cell lymphoma-associated antigen 1 isofo...
MIA3                  0.139   melanoma inhibitory activity family, member 3 [Homo...
GCC2                  0.036   GRIP and coiled-coil domain-containing 2 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 1 
CENPF                 0.035   centromere protein F 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 2 
EEA1                  0.033   early endosome antigen 1, 162kD 
CEP110                0.033   centrosomal protein 110kDa 
MYH10                 0.032   myosin, heavy polypeptide 10, non-muscle 
MYH15                 0.031   myosin, heavy polypeptide 15 
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.031   myosin, heavy polypeptide 9, non-muscle 
MYH3                  0.031   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC88C               0.031   DVL-binding protein DAPLE 
KTN1                  0.030   kinectin 1 isoform a 
KTN1                  0.030   kinectin 1 isoform a 
LOC283685             0.030   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GOLGB1                0.030   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYO18A                0.030   myosin 18A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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