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Search of human proteins with 218505682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|218505682 hypothetical protein LOC127687 isoform 2 [Homo
sapiens]
(47 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218505682 hypothetical protein LOC127687 isoform 2 [Homo sapi... 100 2e-22
gi|206725424 hypothetical protein LOC127687 isoform 1 [Homo sapi... 100 2e-22
gi|66730481 neuregulin 3 [Homo sapiens] 32 0.083
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.14
gi|239757038 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239751528 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239746039 PREDICTED: hypothetical protein XP_002343635 [Homo ... 31 0.19
gi|239753984 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169168504 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169167589 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 29 0.71
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 29 0.71
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 29 0.71
gi|122937321 UNC homeobox [Homo sapiens] 29 0.92
gi|147902746 MEX3A protein [Homo sapiens] 29 0.92
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 28 1.2
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 28 1.2
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 28 1.2
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 28 1.2
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 28 1.2
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 28 1.2
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens] 28 1.6
gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens] 28 1.6
gi|23510368 homeobox D11 [Homo sapiens] 28 2.1
gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens] 28 2.1
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
>gi|218505682 hypothetical protein LOC127687 isoform 2 [Homo
sapiens]
Length = 47
Score = 100 bits (250), Expect = 2e-22
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 47
MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP
Sbjct: 1 MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 47
>gi|206725424 hypothetical protein LOC127687 isoform 1 [Homo
sapiens]
Length = 110
Score = 100 bits (250), Expect = 2e-22
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 47
MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP
Sbjct: 64 MLRQLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 110
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 32.3 bits (72), Expect = 0.083
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 47
P A SA+ G A +A GG P G+GAAEP
Sbjct: 11 PGAASAAAASAEEGTAAAAAAAAAGGGPDGGGEGAAEP 48
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 9 RPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAG-DGAAEP 47
RP P G + +PG P QP G P G DG + P
Sbjct: 151 RPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRP 190
>gi|239757038 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 2 LRQLGRRRPEPAGGGNVS-AKPGAPP---QPAVSARGGFPKD 39
LR+ GR RP P G S A+PG P +PA ++R G P++
Sbjct: 56 LRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRE 97
>gi|239751528 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 2 LRQLGRRRPEPAGGGNVS-AKPGAPP---QPAVSARGGFPKD 39
LR+ GR RP P G S A+PG P +PA ++R G P++
Sbjct: 56 LRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRE 97
>gi|239746039 PREDICTED: hypothetical protein XP_002343635 [Homo
sapiens]
Length = 144
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 2 LRQLGRRRPEPAGGGNVS-AKPGAPP---QPAVSARGGFPKD 39
LR+ GR RP P G S A+PG P +PA ++R G P++
Sbjct: 56 LRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRE 97
>gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 4 QLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPK-DAGDGAAEP 47
QL RR+ P GG SA A P A A G P+ G GA +P
Sbjct: 6 QLRRRQARPFGGAAGSALMEAAPNSAAPASTGRPRAHVGSGADDP 50
>gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 4 QLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPK-DAGDGAAEP 47
QL RR+ P GG SA A P A A G P+ G GA +P
Sbjct: 6 QLRRRQARPFGGAAGSALMEAAPNSAAPASTGRPRAHVGSGADDP 50
>gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 4 QLGRRRPEPAGGGNVSAKPGAPPQPAVSARGGFPK-DAGDGAAEP 47
QL RR+ P GG SA A P A A G P+ G GA +P
Sbjct: 6 QLRRRQARPFGGAAGSALMEAAPNSAAPASTGRPRAHVGSGADDP 50
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 7 RRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGD 42
R P P GG +A +PP PA SAR P+ D
Sbjct: 534 RNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWD 569
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 7 RRRPEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGD 42
R P P GG +A +PP PA SAR P+ D
Sbjct: 406 RNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWD 441
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 12 PAGGGNVSAKPGAPPQPA 29
P GGG+ A+P APP PA
Sbjct: 137 PCGGGSSGAQPSAPPPPA 154
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 13 AGGGNVSAKPGAPPQPAVSARGGFPKDAGDGAAEP 47
+GGG +S +P PP PA G A A P
Sbjct: 237 SGGGGLSPEPPEPPPPAAKGPGAHASGAAGTAPAP 271
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 14 GGGNVSAKPGAPPQPA 29
GGG A+P APPQPA
Sbjct: 65 GGGGAPAQPAAPPQPA 80
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAG 41
P PAG + PGA QP G P AG
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAGD 42
P P+G + KPG +P ++ + G P D G+
Sbjct: 1820 PGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGE 1852
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAG 41
P P GGG +PG P + + G P AG
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAG 1179
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAG 41
P P GGG +PG P + + G P AG
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAG 1179
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPKDAG 41
P P GGG +PG P + + G P AG
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAG 1179
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 5 LGRRRPEPAGGGNVSAKPGAPPQPAVSARGGF--PKDAGDGAAEP 47
L + R P GGG +AKP A P P V A P G AA+P
Sbjct: 105 LRKGRDPPDGGG--TAKPLAVPVPTVPAAAATCEPPSGGSAAAQP 147
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 8 RRPEPAGGGNVSAKPGAPPQPAVSARGGFP 37
R PEP G GN + KP A P P G FP
Sbjct: 179 RSPEPEGRGNHARKPAALPVP-----GRFP 203
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 14 GGGNVSAKPGAPPQPAVSARGGFP 37
G G SA+PG PP P + GG P
Sbjct: 574 GRGAQSAEPGTPPSPPGAEHGGGP 597
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 8 RRPEPAGGGNVSAKPGAPPQPAVSARGGFP 37
R PEP G GN + KP A P P G FP
Sbjct: 179 RSPEPEGRGNHARKPAALPVP-----GRFP 203
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 8 RRPEPAGGGNVSAKPGAPPQPAVSARGGFP 37
R PEP G GN + KP A P P G FP
Sbjct: 179 RSPEPEGRGNHARKPAALPVP-----GRFP 203
>gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]
Length = 475
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 10 PEPAGGGNVSAK-PGAPPQPAVSARGGFP 37
PEPAGG A P +P QP S G P
Sbjct: 285 PEPAGGATPGATLPKSPSQPTESPAGSLP 313
>gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]
Length = 506
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 10 PEPAGGGNVSAK-PGAPPQPAVSARGGFP 37
PEPAGG A P +P QP S G P
Sbjct: 316 PEPAGGATPGATLPKSPSQPTESPAGSLP 344
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 10 PEPAGGGNVSAKPGAPPQPAVSARGGFPK-DAGDGAAEP 47
P P G P APPQP +A G P+ AG G P
Sbjct: 186 PGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSP 224
>gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens]
Length = 574
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 10 PEPAGGGNVSAKPGA---------PPQPAVSARGGFPKDAGDGAAEP 47
PEP G G A PP+P + + GGF D G G P
Sbjct: 13 PEPPGPGIPPAYSSPRRERLRWPPPPKPRLKSGGGFGPDPGSGTTVP 59
>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 9 RPEPAGGGNVSAKPGAPPQPAVSARGGFPK 38
RP+ AG + A P PP P V AR P+
Sbjct: 60 RPQKAGPRSAIAPPQPPPAPPVPARARSPQ 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,908,487
Number of Sequences: 37866
Number of extensions: 145302
Number of successful extensions: 1396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 203
length of query: 47
length of database: 18,247,518
effective HSP length: 21
effective length of query: 26
effective length of database: 17,452,332
effective search space: 453760632
effective search space used: 453760632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.