Guide to the Human Genome
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Name: C1orf122 Sequence: fasta or formatted (47aa) NCBI GI: 218505682
Description:

hypothetical protein LOC127687 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {110aa} hypothetical protein LOC127687 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0          8           2
 C cysteine            0.0          0           0
 D aspartate           4.3          2           1
 E glutamate           4.3          2           1
 F phenylalanine       2.1          1           1
 G glycine            19.1          9           3
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.3          2           1
 L leucine             4.3          2           1
 M methionine          2.1          1           1
 N asparagine          2.1          1           1
 P proline            17.0          8           2
 Q glutamine           4.3          2           1
 R arginine           10.6          5           3
 S serine              4.3          2           1
 T threonine           0.0          0           0
 V valine              4.3          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC127687 isoform 2 
C1orf122              1.000   hypothetical protein LOC127687 isoform 1 
NRG3                  0.093   neuregulin 3 
COL5A2                0.093   alpha 2 type V collagen preproprotein 
LOC100293285          0.080   PREDICTED: hypothetical protein 
LOC100289533          0.080   PREDICTED: hypothetical protein 
LOC100289533          0.080   PREDICTED: hypothetical protein XP_002343635 
LOC100131397          0.067   PREDICTED: hypothetical protein 
LOC100131397          0.067   PREDICTED: hypothetical protein 
LOC100131397          0.067   PREDICTED: hypothetical protein 
LOC100289782          0.053   PREDICTED: hypothetical protein XP_002347588 
LOC100287587          0.053   PREDICTED: hypothetical protein XP_002343392 
ZIC5                  0.053   zinc finger protein of the cerebellum 5 
UNCX                  0.053   UNC homeobox 
MEX3A                 0.053   MEX3A protein 
COL1A1                0.040   alpha 1 type I collagen preproprotein 
COL7A1                0.040   alpha 1 type VII collagen precursor 
COL4A5                0.040   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.040   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.040   type IV collagen alpha 5 isoform 3 precursor 
CDK5R2                0.040   cyclin-dependent kinase 5, regulatory subunit 2 [Homo...
LOC729506             0.040   PREDICTED: hypothetical protein 
LOC100133655          0.040   PREDICTED: hypothetical protein 
LOC729506             0.040   PREDICTED: hypothetical protein 
LOC729506             0.040   PREDICTED: hypothetical protein 
BIN1                  0.040   bridging integrator 1 isoform 7 
BIN1                  0.040   bridging integrator 1 isoform 3 
HOXD11                0.040   homeobox D11 
SENP3                 0.040   SUMO1/sentrin/SMT3 specific protease 3 
LOC100293168          0.040   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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