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Search of human proteins with 217330576
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217330576 neurexophilin 3 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217330576 neurexophilin 3 [Homo sapiens] 538 e-153
gi|23097338 neurexophilin 1 precursor [Homo sapiens] 255 2e-68
gi|52138515 neurexophilin 2 [Homo sapiens] 247 8e-66
gi|39930315 neurexophilin 4 [Homo sapiens] 113 2e-25
gi|21450781 hypothetical protein LOC91775 [Homo sapiens] 47 2e-05
gi|197333800 hypothetical protein LOC91775 [Homo sapiens] 47 2e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 37 0.021
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 36 0.028
gi|210147446 hypothetical protein LOC120406 [Homo sapiens] 35 0.048
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 35 0.048
gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens] 35 0.048
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 35 0.081
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 35 0.081
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 35 0.081
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 35 0.081
gi|157743252 pecanex-like 3 [Homo sapiens] 33 0.18
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.31
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 32 0.40
gi|169234964 hypothetical protein LOC120400 [Homo sapiens] 32 0.40
gi|110815800 WD repeat domain 32 [Homo sapiens] 32 0.53
gi|33946327 nucleoporin 214kDa [Homo sapiens] 32 0.53
gi|28559039 mediator complex subunit 1 [Homo sapiens] 32 0.53
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 32 0.69
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 32 0.69
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 32 0.69
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 32 0.69
gi|23510333 pygopus homolog 2 [Homo sapiens] 32 0.69
gi|18959210 WIRE protein [Homo sapiens] 32 0.69
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 31 0.90
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 31 0.90
>gi|217330576 neurexophilin 3 [Homo sapiens]
Length = 252
Score = 538 bits (1386), Expect = e-153
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MQLTRCCFVFLVQGSLYLVICGQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPM 60
MQLTRCCFVFLVQGSLYLVICGQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPM
Sbjct: 1 MQLTRCCFVFLVQGSLYLVICGQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPM 60
Query: 61 ANSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVALNLLVTG 120
ANSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVALNLLVTG
Sbjct: 61 ANSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVALNLLVTG 120
Query: 121 KIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQIFIEAKASKIFNCRMEWE 180
KIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQIFIEAKASKIFNCRMEWE
Sbjct: 121 KIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQIFIEAKASKIFNCRMEWE 180
Query: 181 KVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFYSTDYRLVQKVCPDY 240
KVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFYSTDYRLVQKVCPDY
Sbjct: 181 KVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFYSTDYRLVQKVCPDY 240
Query: 241 NYHSDTPYYPSG 252
NYHSDTPYYPSG
Sbjct: 241 NYHSDTPYYPSG 252
>gi|23097338 neurexophilin 1 precursor [Homo sapiens]
Length = 271
Score = 255 bits (652), Expect = 2e-68
Identities = 114/175 (65%), Positives = 143/175 (81%), Gaps = 1/175 (0%)
Query: 79 LGQPPNRPNHSP-PPSAKVKKIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHN 137
L +P R P + K KK+FGWGDF+SNIKTV LNLL+TGKIVDHGNGTFSV+F+HN
Sbjct: 97 LQEPRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHN 156
Query: 138 ATGQGNISISLVPPSKAVEFHQEQQIFIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAK 197
+TGQGN+S+SLVPP+K VEF QQ I+AK SK FNCR+E+EKV++ + +LC +DP+K
Sbjct: 157 STGQGNVSVSLVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSK 216
Query: 198 ICSRDHAQSSATWSCSQPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG 252
C ++ QS +W CS+PFKV+C+YI+FYSTDY+LVQKVCPDYNYHSDTPY+PSG
Sbjct: 217 TCYQEQTQSHVSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG 271
>gi|52138515 neurexophilin 2 [Homo sapiens]
Length = 264
Score = 247 bits (630), Expect = 8e-66
Identities = 108/160 (67%), Positives = 133/160 (83%)
Query: 93 SAKVKKIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPS 152
+ K KK+FGWGDF+SNIKTV LNLL+TGKIVDHGNGTFSV+F+HN+TG GN+S+SLVPPS
Sbjct: 105 TGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGLGNVSVSLVPPS 164
Query: 153 KAVEFHQEQQIFIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSC 212
K VEF Q +E K SK FNCR+E+EK +R ++T+LC DP+KIC ++ QS +W C
Sbjct: 165 KVVEFEVSPQSTLETKESKSFNCRIEYEKTDRAKKTALCNFDPSKICYQEQTQSHVSWLC 224
Query: 213 SQPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG 252
S+PFKV+C+YIAFYS DY+LVQKVCPDYNYHS+TPY SG
Sbjct: 225 SKPFKVICIYIAFYSVDYKLVQKVCPDYNYHSETPYLSSG 264
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 113 bits (282), Expect = 2e-25
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 167 AKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFY 226
AK S+ FNC +E+EK R R+ C +DP+++C +H QS A W C++PFKV+C++++F
Sbjct: 225 AKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFL 284
Query: 227 STDYRLVQKVCPDYNYHSDTPYY 249
S DY+LVQKVCPDYN+ S+ PY+
Sbjct: 285 SFDYKLVQKVCPDYNFQSEHPYF 307
Score = 101 bits (252), Expect = 5e-22
Identities = 51/92 (55%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
Query: 67 GLLAPPGEAWGILGQPPNRPNHSPP-PSAKVKKIFGWGDFYSNIKTVALNLLVTGKIVDH 125
G LA G A + P R P +A+ KKIFGWGDFY + T+ +LLVTGKIVDH
Sbjct: 75 GALARAGAAGAL---PAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDH 131
Query: 126 GNGTFSVHFQHNATGQGNISISLVPPSKAVEF 157
NGTFSV+F+HN++ GN+S+S+VPPSK VEF
Sbjct: 132 VNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEF 163
>gi|21450781 hypothetical protein LOC91775 [Homo sapiens]
Length = 559
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 98 KIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEF 157
K +G + I ++ L G++VD+ NG + V F G+ +S+SLV PS+ +
Sbjct: 137 KKYGGDYLQARIHSLKLQAGAVGRVVDYQNGFYKVFFTLLWPGKVKVSVSLVHPSEGIRV 196
Query: 158 HQEQQIFIEAKASKI-FNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPF 216
Q Q E K ++ F ++ ++C +C+ + W C +P
Sbjct: 197 LQRLQ---EDKPDRVYFKSLFRSGRISETTECNVCLPGNLPLCNFTDLYTGEPWFCFKPK 253
Query: 217 KVVC 220
K+ C
Sbjct: 254 KLPC 257
>gi|197333800 hypothetical protein LOC91775 [Homo sapiens]
Length = 559
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 98 KIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEF 157
K +G + I ++ L G++VD+ NG + V F G+ +S+SLV PS+ +
Sbjct: 137 KKYGGDYLQARIHSLKLQAGAVGRVVDYQNGFYKVFFTLLWPGKVKVSVSLVHPSEGIRV 196
Query: 158 HQEQQIFIEAKASKI-FNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPF 216
Q Q E K ++ F ++ ++C +C+ + W C +P
Sbjct: 197 LQRLQ---EDKPDRVYFKSLFRSGRISETTECNVCLPGNLPLCNFTDLYTGEPWFCFKPK 253
Query: 217 KVVC 220
K+ C
Sbjct: 254 KLPC 257
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 36.6 bits (83), Expect = 0.021
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 22 GQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
G+ GPP D R +P+ P +G P+ P PPG+ G Q
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPPQ 124
Query: 82 PPNRPNHSPPP 92
NRP PPP
Sbjct: 125 GGNRPQGPPPP 135
Score = 35.8 bits (81), Expect = 0.037
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 22 GQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
G+ GPP D R +P+ P +G P+ P PPG+ G Q
Sbjct: 197 GKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPPQ 246
Query: 82 PPNRPNHSPPP 92
N+P PPP
Sbjct: 247 GGNKPQGPPPP 257
Score = 33.1 bits (74), Expect = 0.24
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRP 86
PP P+ +G RP+ P G P+ P +PPG+ G Q N+P
Sbjct: 112 PPPPGKPQGPPPQGGNRPQGPPPPG--KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP 169
Query: 87 NHSPPPSAK 95
PPP K
Sbjct: 170 QGPPPPPGK 178
Score = 33.1 bits (74), Expect = 0.24
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 22 GQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
G+ GPP D R +P+ P +G P+ P PPG+ G Q
Sbjct: 136 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPPQ 185
Query: 82 PPNRPNHSPPP 92
+P PPP
Sbjct: 186 GGKKPQGPPPP 196
Score = 32.7 bits (73), Expect = 0.31
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 22 GQDDGPP--GSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGIL 79
G+ GPP G P+ G+P+ P+ SP+S PPG+ G
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS-------------PPGKPQGPP 101
Query: 80 GQPPNRPNHSPPPSAK 95
Q N+P PPP K
Sbjct: 102 PQGGNQPQGPPPPPGK 117
Score = 32.7 bits (73), Expect = 0.31
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRP 86
PP P+ +G +P+ P G P+ P +PPG+ G Q N+P
Sbjct: 173 PPPPGKPQGPPPQGGKKPQGPPPPG--KPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQP 230
Query: 87 NHSPPPSAK 95
PPP K
Sbjct: 231 QGPPPPPGK 239
Score = 29.6 bits (65), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP-MANSTLLGLLAPPGEAWGILGQPPNR 85
PP P+ +G +P+ P G P+ P S +PPG+ G Q N
Sbjct: 234 PPPPGKPQGPPPQGGNKPQGPPPPG--KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 291
Query: 86 PNHSPPPS 93
P PPP+
Sbjct: 292 PQGPPPPA 299
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.2 bits (82), Expect = 0.028
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 26 GPPGSEDPERDDHEGQPR--PRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPP 83
GPPG + DD E PR P P RG + PK P G PPG G+ GQP
Sbjct: 655 GPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPP-------GPPGPPG-VTGMDGQPG 706
Query: 84 NRPNHSP 90
+ N P
Sbjct: 707 PKGNVGP 713
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 25 DGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGE 74
DGPPG P P +P +G PK + L+GL+ PPGE
Sbjct: 1458 DGPPGPMGP----------PGLPGLKGDSGPKGEK-GHPGLIGLIGPPGE 1496
>gi|210147446 hypothetical protein LOC120406 [Homo sapiens]
Length = 559
Score = 35.4 bits (80), Expect = 0.048
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 97 KKIFGWGDFY-SNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAV 155
+K +G GDF + + + AL +GK+ D NGT+ V F GQ ++S+ L+ PS+ V
Sbjct: 142 RKQYG-GDFLRARMYSTALMAGASGKVTDFNNGTYLVSFTLFWEGQVSLSLLLIHPSEGV 200
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 35.4 bits (80), Expect = 0.048
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 22 GQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
G+ GPP D R +P+ P +G P+ P PPG+ G Q
Sbjct: 96 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPPQ 145
Query: 82 PPNRPNHSPPP 92
N+P PPP
Sbjct: 146 GGNKPQGPPPP 156
Score = 32.7 bits (73), Expect = 0.31
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 22 GQDDGPP--GSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGIL 79
G+ GPP G P+ G+P+ P+ SP+S PPG+ G
Sbjct: 76 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS-------------PPGKPQGPP 122
Query: 80 GQPPNRPNHSPPPSAK 95
Q N+P PPP K
Sbjct: 123 PQGGNQPQGPPPPPGK 138
Score = 32.3 bits (72), Expect = 0.40
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 22 GQDDGPPGSEDPERDDHEGQP-RPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILG 80
G+ GPP D + P +P+ P +G P+ P PPG+ G
Sbjct: 219 GKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPP 268
Query: 81 QPPNRPNHSPPP 92
Q N+P PPP
Sbjct: 269 QGGNKPQGPPPP 280
Score = 32.0 bits (71), Expect = 0.53
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 22 GQDDGPPGSEDPERDDHEGQP-RPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILG 80
G+ GPP D + P +P+ P +G P+ P PPG+ G
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPP----------PPPGKPQGPPP 206
Query: 81 QPPNRPNHSPPP 92
Q N+P PPP
Sbjct: 207 QGGNKPQGPPPP 218
Score = 32.0 bits (71), Expect = 0.53
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 22 GQDDGPP--GSEDPERDDHEGQPRPRVP----RKRGHISPKSRPMA-----NSTLLGLLA 70
G+ GPP G P+ G+P+ P + R SP +P + G
Sbjct: 261 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 320
Query: 71 PPGEAWGILGQPPNRPNHSPPP 92
PPG+ G Q N+P PPP
Sbjct: 321 PPGKPQGPPPQGGNKPQGPPPP 342
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP-MANSTLLGLLAPPGEAWGILGQPPNR 85
PP P+ +G +P+ P G P+ P ++ +PPG+ G Q N+
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPPPG--KPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ 252
Query: 86 PNHSPPPSAK 95
P PPP K
Sbjct: 253 PQGPPPPPGK 262
Score = 29.6 bits (65), Expect = 2.6
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP-MANSTLLGLLAPPGEAWGILGQPPNR 85
PP P+ +G +P+ P G P+ P ++ +PPG+ G Q N+
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPPPG--KPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQ 190
Query: 86 PNHSPPPSAK 95
P PPP K
Sbjct: 191 PQGPPPPPGK 200
Score = 29.6 bits (65), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP-MANSTLLGLLAPPGEAWGILGQPPNR 85
PP P+ +G +P+ P G P+ P S +PPG+ G Q N
Sbjct: 319 PPPPGKPQGPPPQGGNKPQGPPPPG--KPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNN 376
Query: 86 PNHSPPPS 93
P PPP+
Sbjct: 377 PQGPPPPA 384
>gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens]
Length = 544
Score = 35.4 bits (80), Expect = 0.048
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 97 KKIFGWGDFY-SNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAV 155
+K +G GDF + + + AL +GK+ D NGT+ V F GQ ++S+ L+ PS+ V
Sbjct: 130 RKQYG-GDFLRARMSSPALMAGASGKVTDFNNGTYLVSFTLFWEGQVSLSLLLIHPSEGV 188
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 34.7 bits (78), Expect = 0.081
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNR 85
GP P R G P PR+ + P S+ G+ PP E G PP R
Sbjct: 895 GPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGI--PPEEP----GAPPRR 948
Query: 86 --PNHSPPPSAKVKKI 99
P PPP KV+++
Sbjct: 949 AGPIKKPPPPTKVEEL 964
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 25 DGPPGSEDPERD---DHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
+GPPGSE P R H+G R +PR++ + P S PG
Sbjct: 1699 EGPPGSEPPRRPPPAPHDGD-RKELPREQ-PLPPGPIGTERSQRTDRGTEPG-------- 1748
Query: 82 PPNRPNHSPPPSAKVKKIFGWGDFYSNIKTV 112
P RP+H P P + FG D S+++ V
Sbjct: 1749 -PIRPSHRPGPPVQ----FGTSDKDSDLRLV 1774
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 34.7 bits (78), Expect = 0.081
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 20 ICGQD---DGPPGSEDPERD--DHEGQPRPRVPRKRGHISPKSRPMANSTL-------LG 67
+CG D PPGS PER + E PRP P G + K P+A +L L
Sbjct: 239 LCGLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLE 298
Query: 68 LLAPPGEAW----GILG-QPPNRPN 87
APP + + G G +PP RP+
Sbjct: 299 EAAPPSDPFRGGSGSPGPEPPGRPD 323
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 34.7 bits (78), Expect = 0.081
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 20 ICGQD---DGPPGSEDPERD--DHEGQPRPRVPRKRGHISPKSRPMANSTL-------LG 67
+CG D PPGS PER + E PRP P G + K P+A +L L
Sbjct: 220 LCGLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLE 279
Query: 68 LLAPPGEAW----GILG-QPPNRPN 87
APP + + G G +PP RP+
Sbjct: 280 EAAPPSDPFRGGSGSPGPEPPGRPD 304
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 34.7 bits (78), Expect = 0.081
Identities = 20/72 (27%), Positives = 27/72 (37%)
Query: 22 GQDDGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ 81
G+ GPP D R +P+ P +G S +PPG+ G Q
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 134
Query: 82 PPNRPNHSPPPS 93
N P PPP+
Sbjct: 135 EGNNPQGPPPPA 146
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 33.5 bits (75), Expect = 0.18
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 25 DGPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMAN-STLLGLLAPPGEAWGIL---- 79
D PPG PE D + +P P + + T++G PPG A +L
Sbjct: 324 DSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRP 383
Query: 80 ----------GQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKT 111
QPP R HSPP A + + G F+ + T
Sbjct: 384 KDLALLRPSKRQPPLR-RHSPPGRAPRRPLLEGGGFFEDEDT 424
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.7 bits (73), Expect = 0.31
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKR-GHISPKSRP--MANSTLLGLLAPPGEAWGILGQP 82
GPPGS P + +G P P+ P R G P+ P N + G PG+ G+ G P
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQP-GLPGLP 1296
Query: 83 PNRPNHSPP 91
+ + PP
Sbjct: 1297 GLKGDQGPP 1305
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 DDGPPGSEDPERDDHEGQP-RPRVPRKRGHISPKSRPMANSTLLGLLAPPG 73
D+GPPG P +GQP P +P G P P G PPG
Sbjct: 410 DEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPG 460
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 32.3 bits (72), Expect = 0.40
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGIL---GQP 82
G PG +D DDHEG P P P + + AP A G+
Sbjct: 1379 GTPGPDDARDDDHEGGPVEGP-------GPLPSPASATATAAPAAPEDAATSAAAAPGEG 1431
Query: 83 PNRPNHSPPPS 93
P P+ +PPPS
Sbjct: 1432 PAAPSSAPPPS 1442
>gi|169234964 hypothetical protein LOC120400 [Homo sapiens]
Length = 405
Score = 32.3 bits (72), Expect = 0.40
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 113 ALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSK 153
AL +GK++D NGT+ V F GQ ++S+ L+ PS+
Sbjct: 5 ALTAGASGKVMDFNNGTYLVSFTLFWEGQVSLSLLLIHPSE 45
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 32.0 bits (71), Expect = 0.53
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLL-APPGEAWGILGQ--P 82
GPP P D P R PR+ G +P P S LGL AP G+ P
Sbjct: 33 GPPSPLHPGADATHPPPPARSPRRPG--APSLSPAPRSGELGLPGAPESSTASAPGEPSP 90
Query: 83 PNRPNHSPPPSAKVK 97
P+ P P P + K
Sbjct: 91 PSPPCRRPGPDCRAK 105
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 32.0 bits (71), Expect = 0.53
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 33 PERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRP-----N 87
PER EG+ +P+ P S + P ++ L A A L PP+ P
Sbjct: 417 PERLSLEGERQPKSPG-----STPTTPTSSQAPQKLDASAAAAPASL--PPSSPAAPIAT 469
Query: 88 HSPPPSAKVKKIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISIS 147
S P+ +F +G S++K+ A VTG+ + +G+ S A G G + S
Sbjct: 470 FSLLPAGGAPTVFSFGS--SSLKSSAT---VTGEPPSYSSGSDS---SKAAPGPGPSTFS 521
Query: 148 LVPPSKA 154
VPPSKA
Sbjct: 522 FVPPSKA 528
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 32.0 bits (71), Expect = 0.53
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 51 GHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPNHSPPP 92
GH S+ N L LL G +G P P+H+PPP
Sbjct: 590 GHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPP 631
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 31.6 bits (70), Expect = 0.69
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 52 HISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPN----HSPPPSAK 95
H+ P +RP ST GL A G A+G LG P PN H PS +
Sbjct: 716 HLEPFNRP---STFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDGPSVQ 760
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 31.6 bits (70), Expect = 0.69
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 52 HISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPN----HSPPPSAK 95
H+ P +RP ST GL A G A+G LG P PN H PS +
Sbjct: 740 HLEPFNRP---STFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDGPSVQ 784
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 31.6 bits (70), Expect = 0.69
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKR----GHISPKSRP--MANSTLLGLLAPPGEAWGIL 79
GPPGS P + +G P P+ P R G P+ P N + G PG+ G+
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQP-GLP 1296
Query: 80 GQPPNRPNHSPP 91
G P + + PP
Sbjct: 1297 GLPGLKGDQGPP 1308
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 DDGPPGSEDPERDDHEGQP-RPRVPRKRGHISPKSRPMANSTLLGLLAPPG 73
D+GPPG P +GQP P +P G P P G PPG
Sbjct: 410 DEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPG 460
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 31.6 bits (70), Expect = 0.69
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQ---- 81
GPPG + P+ E P+ R R P L+G PPG G +GQ
Sbjct: 157 GPPGPQGPKGQKGEPYALPKEERDRYRGEP-----GEPGLVGFQGPPGRP-GHVGQMGPV 210
Query: 82 -PPNRPNHSPPPSAK 95
P RP PP K
Sbjct: 211 GAPGRPGPPGPPGPK 225
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 31.6 bits (70), Expect = 0.69
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 22 GQDDG----PPGSEDPERDDHEGQPRPRVPRKRGHISPKSR------PMANSTLLGLLAP 71
G+D G PP S ++ H G P V + P S P ANS LAP
Sbjct: 256 GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANS-----LAP 310
Query: 72 PGEAWGILG-QPP 83
PG+A G G QPP
Sbjct: 311 PGKAGGGSGPQPP 323
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 31.6 bits (70), Expect = 0.69
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRP 86
PP S P + P R P RG P P+ + PP +PP+R
Sbjct: 298 PPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHGSEPPSRG 357
Query: 87 NHSPPPS 93
PPPS
Sbjct: 358 KPPPPPS 364
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.2 bits (69), Expect = 0.90
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 26 GPPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP---MANSTLLGLLAPPGEAWGILGQP 82
GPPG P G P PR P G P P ++NS L PPG G P
Sbjct: 860 GPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETF-LSGPPGPP----GPP 914
Query: 83 PNRPNHSPP 91
+ + PP
Sbjct: 915 GPKGDQGPP 923
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.90
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 22 GQDDGPP--GSEDPERDDHEGQPR---PRVPRKRGHISPKSRPMANSTLLGLLAPPGEAW 76
G+ GPP G P+ G+P+ P+ + R SP +P PP +
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ---------GPPPQGG 105
Query: 77 GILGQPP---NRPNHSPPP 92
G PP N+P PPP
Sbjct: 106 KPQGPPPQGGNKPQGPPPP 124
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 27 PPGSEDPERDDHEGQPRPRVPRKRGHISPKSRP-MANSTLLGLLAPPGEAWGILGQPPNR 85
PP P+ +G +P+ P G P+ P S +PPG+ G Q N
Sbjct: 101 PPQGGKPQGPPPQGGNKPQGPPPPG--KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 158
Query: 86 PNHSPPPS 93
P PPP+
Sbjct: 159 PQGPPPPA 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,484,052
Number of Sequences: 37866
Number of extensions: 648011
Number of successful extensions: 2494
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 2389
Number of HSP's gapped (non-prelim): 199
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.