Guide to the Human Genome
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Name: FAM55C Sequence: fasta or formatted (559aa) NCBI GI: 197333800
Description:

hypothetical protein LOC91775

Not currently referenced in the text

Other entries for this name:
alt mRNA {559aa} hypothetical protein LOC91775
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         21           2
 C cysteine            2.0         11           2
 D aspartate           4.5         25           1
 E glutamate           4.5         25           2
 F phenylalanine       6.8         38           2
 G glycine             5.9         33           2
 H histidine           2.5         14           1
 I isoleucine          3.9         22           1
 K lysine              5.4         30           2
 L leucine            10.4         58           2
 M methionine          1.4          8           1
 N asparagine          4.5         25           1
 P proline             5.5         31           2
 Q glutamine           4.5         25           2
 R arginine            5.7         32           2
 S serine              7.5         42           3
 T threonine           5.4         30           2
 V valine             10.6         59           3
 W tryptophan          1.6          9           1
 Y tyrosine            3.8         21           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91775 
FAM55C                1.000   hypothetical protein LOC91775 
FAM55B                0.245   hypothetical protein LOC120406 
FAM55D                0.219   hypothetical protein LOC54827 isoform 1 
FAM55A                0.177   hypothetical protein LOC120400 
FAM55D                0.113   hypothetical protein LOC54827 isoform 2 
NXPH1                 0.022   neurexophilin 1 precursor 
NXPH3                 0.020   neurexophilin 3 
NXPH2                 0.017   neurexophilin 2 
NXPH4                 0.014   neurexophilin 4 
GALNT6                0.005   polypeptide N-acetylgalactosaminyltransferase 6 [Ho...
SEMA7A                0.004   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.004   semaphorin 7A isoform 3 
SEMA7A                0.004   semaphorin 7A isoform 2 preproprotein 
PCNXL3                0.004   pecanex-like 3 
CTSC                  0.004   cathepsin C isoform a preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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