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Search of human proteins with 21464119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1
[Homo sapiens]
(556 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... 1181 0.0
gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo ... 1158 0.0
gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo... 991 0.0
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ... 936 0.0
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s... 857 0.0
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 86 1e-16
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 86 1e-16
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 80 6e-15
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 79 1e-14
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 79 1e-14
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens] 74 4e-13
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 67 4e-11
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 59 1e-08
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 59 1e-08
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 55 2e-07
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 55 2e-07
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 54 5e-07
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 54 5e-07
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 52 1e-06
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 52 1e-06
gi|110431370 espin [Homo sapiens] 42 0.001
gi|110681708 zinc finger protein 579 [Homo sapiens] 42 0.001
gi|156139122 CXXC finger 6 [Homo sapiens] 42 0.002
gi|210032580 SET domain containing 1B [Homo sapiens] 42 0.002
gi|158261990 CXXC finger 5 [Homo sapiens] 40 0.007
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.007
gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens] 39 0.013
gi|153792074 proline rich 12 [Homo sapiens] 39 0.013
gi|56549696 E1A binding protein p400 [Homo sapiens] 39 0.016
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 38 0.021
>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Homo
sapiens]
Length = 556
Score = 1181 bits (3056), Expect = 0.0
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
Query: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCR 180
DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCR
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCR 180
Query: 181 GCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPL 240
GCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPL
Sbjct: 181 GCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPL 240
Query: 241 PPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMD 300
PPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMD
Sbjct: 241 PPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMD 300
Query: 301 CGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRP 360
CGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRP
Sbjct: 301 CGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRP 360
Query: 361 SSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQV 420
SSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQV
Sbjct: 361 SSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQV 420
Query: 421 PGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKA 480
PGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKA
Sbjct: 421 PGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKA 480
Query: 481 VDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAV 540
VDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAV
Sbjct: 481 VDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAV 540
Query: 541 WLPRSKDLKKPGARKQ 556
WLPRSKDLKKPGARKQ
Sbjct: 541 WLPRSKDLKKPGARKQ 556
>gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo
sapiens]
Length = 605
Score = 1158 bits (2996), Expect = 0.0
Identities = 556/605 (91%), Positives = 556/605 (91%), Gaps = 49/605 (8%)
Query: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
Query: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK-------- 172
DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
Query: 173 -----------------------------------------SRGCGVCRGCQTQEDCGHC 191
SRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
Query: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251
PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
Query: 252 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 311
TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP
Sbjct: 301 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 360
Query: 312 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 371
KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 361 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 420
Query: 372 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 431
LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 421 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 480
Query: 432 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 491
LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE
Sbjct: 481 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 540
Query: 492 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 551
PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP
Sbjct: 541 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 600
Query: 552 GARKQ 556
GARKQ
Sbjct: 601 GARKQ 605
>gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo
sapiens]
Length = 549
Score = 991 bits (2562), Expect = 0.0
Identities = 495/605 (81%), Positives = 498/605 (82%), Gaps = 105/605 (17%)
Query: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
Query: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK-------- 172
DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
Query: 173 -----------------------------------------SRGCGVCRGCQTQEDCGHC 191
SRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
Query: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251
PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
Query: 252 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 311
TEPHPRALAPSPPAEFIYY C D+
Sbjct: 301 TEPHPRALAPSPPAEFIYY------------------------------------CVDED 324
Query: 312 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 371
+ +KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 325 E--------------------LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 364
Query: 372 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 431
LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 365 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 424
Query: 432 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 491
LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE
Sbjct: 425 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 484
Query: 492 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 551
PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP
Sbjct: 485 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 544
Query: 552 GARKQ 556
GARKQ
Sbjct: 545 GARKQ 549
>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
sapiens]
Length = 586
Score = 936 bits (2418), Expect = 0.0
Identities = 468/592 (79%), Positives = 468/592 (79%), Gaps = 118/592 (19%)
Query: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
Query: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK-------- 172
DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
Query: 173 -----------------------------------------SRGCGVCRGCQTQEDCGHC 191
SRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
Query: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251
PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
Query: 252 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 311
TEP QPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP
Sbjct: 301 TEP-----------------------QPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 337
Query: 312 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 371
KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 338 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 397
Query: 372 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 431
LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 398 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 457
Query: 432 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 491
LQ LP VKQ E
Sbjct: 458 LQAVD-------PGLPSVKQ---------------------------------------E 471
Query: 492 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLP 543
PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLP
Sbjct: 472 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLP 523
>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
sapiens]
Length = 503
Score = 857 bits (2213), Expect = 0.0
Identities = 443/605 (73%), Positives = 446/605 (73%), Gaps = 151/605 (24%)
Query: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
Query: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61 LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK-------- 172
DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
Query: 173 -----------------------------------------SRGCGVCRGCQTQEDCGHC 191
SRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
Query: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251
PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
Query: 252 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 311
TEPHPRALAPSPPAEFIYY C D+
Sbjct: 301 TEPHPRALAPSPPAEFIYY------------------------------------CVDED 324
Query: 312 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 371
+ +KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 325 E--------------------LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 364
Query: 372 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 431
LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 365 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 424
Query: 432 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 491
LQ LP VKQ E
Sbjct: 425 LQAVD-------PGLPSVKQ---------------------------------------E 438
Query: 492 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 551
PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP
Sbjct: 439 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 498
Query: 552 GARKQ 556
GARKQ
Sbjct: 499 GARKQ 503
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 85.5 bits (210), Expect = 1e-16
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFK 65
+DCPAL PGWK+ EV RKSG + G+SD YY SP+G + RSK +L RYLG DL+ FDF+
Sbjct: 150 MDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFR 209
Query: 66 QGILCYPAPKAHPVAVASKKRKKPSRPAKTRK 97
G K P + K++ + P K
Sbjct: 210 TG-------KMMPSKLQKNKQRLRNDPLNQNK 234
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 85.5 bits (210), Expect = 1e-16
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFK 65
+DCPAL PGWK+ EV RKSG + G+SD YY SP+G + RSK +L RYLG DL+ FDF+
Sbjct: 150 MDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFR 209
Query: 66 QGILCYPAPKAHPVAVASKKRKKPSRPAKTRK 97
G K P + K++ + P K
Sbjct: 210 TG-------KMMPSKLQKNKQRLRNDPLNQNK 234
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 79.7 bits (195), Expect = 6e-15
Identities = 83/297 (27%), Positives = 119/297 (40%), Gaps = 64/297 (21%)
Query: 224 GCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNR 283
G D K + A+PL PP +P +P R AP P P
Sbjct: 1109 GNDDKSSIAGSEDAEPLAPPI-----KPIKPVTRNKAPQEP--------------PVKKG 1149
Query: 284 RQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQC--LQFAMKR--LLPS 339
R++R+CG C C DCG C C DKPKFGG N K+Q C+ R+C LQ+ + L
Sbjct: 1150 RRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQ 1209
Query: 340 VWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFV 399
+ + S ++ + SS ++ + + KPT + R AP K +
Sbjct: 1210 AKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAR-----EDPAPKKSSSE---- 1260
Query: 400 LPPPGTDLVFLREGASSPVQVPGPVA--ASTEALLQEAQCSGLSWVVALPQVKQEKADTQ 457
PPP + + V PGP + A+T A + ++ QV Q
Sbjct: 1261 -PPPRKPVE--EKSEEGNVSAPGPESKQATTPASRKSSK-----------QVSQ------ 1300
Query: 458 DEWTPGTAVLTSPVLVPGCPSKAVDPGLPS--VKQEPPDPEEDKEENKDDSASKLAP 512
P + P G P K V PS K++PP PE E++K K+AP
Sbjct: 1301 ----PALVIPPQPP-TTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQ---KKVAP 1349
Score = 47.8 bits (112), Expect = 3e-05
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 30/115 (26%)
Query: 172 KSRGCGVCRGCQTQEDCGHCPICLRPPRPG-------------------------LRRQW 206
+SR CG C GCQ EDCG C CL P+ G L++Q
Sbjct: 1151 RSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQA 1210
Query: 207 KCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP----TEPHPR 257
K V+++ + K + +K +S + +Q P P + P P +EP PR
Sbjct: 1211 KAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQK-PTPSAREDPAPKKSSSEPPPR 1264
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 79.0 bits (193), Expect = 1e-14
Identities = 60/195 (30%), Positives = 77/195 (39%), Gaps = 49/195 (25%)
Query: 204 RQWKCVQRRC----------LRGKHARRKGGCDSKMAARRRPGA---QPLPPPP------ 244
R+W C R C R K +R + G + + R G +P+P P
Sbjct: 66 REWYC--RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQRRAG 123
Query: 245 -----------PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACA 293
S SP + P P PS + Q +R R CG C
Sbjct: 124 SGTGVGAMLARGSASPHKSSPQPLVATPS----------QHHQQQQQQIKRSARMCGECE 173
Query: 294 ACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQC-------LQFAMKRLLPSVWSESED 346
AC R DCG CDFC D KFGG N+ RQKCR RQC ++ L P SES
Sbjct: 174 ACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLP 233
Query: 347 GAGSPPPYRRRKRPS 361
P P +++ +PS
Sbjct: 234 RPRRPLPTQQQPQPS 248
Score = 45.8 bits (107), Expect = 1e-04
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 166 REQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRC-LRGKHARR 221
++Q +R CG C C+ EDCGHC C + P RQ KC R+C LR + + +
Sbjct: 159 QQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLRQCQLRARESYK 217
Query: 222 KGGCDSKMAARRRPGAQPLPPPPPSQSPEPTE 253
+P P P Q P+P++
Sbjct: 218 YFPSSLSPVTPSESLPRPRRPLPTQQQPQPSQ 249
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 79.0 bits (193), Expect = 1e-14
Identities = 60/195 (30%), Positives = 77/195 (39%), Gaps = 49/195 (25%)
Query: 204 RQWKCVQRRC----------LRGKHARRKGGCDSKMAARRRPGA---QPLPPPP------ 244
R+W C R C R K +R + G + + R G +P+P P
Sbjct: 66 REWYC--RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQRRAG 123
Query: 245 -----------PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACA 293
S SP + P P PS + Q +R R CG C
Sbjct: 124 SGTGVGAMLARGSASPHKSSPQPLVATPS----------QHHQQQQQQIKRSARMCGECE 173
Query: 294 ACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQC-------LQFAMKRLLPSVWSESED 346
AC R DCG CDFC D KFGG N+ RQKCR RQC ++ L P SES
Sbjct: 174 ACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLP 233
Query: 347 GAGSPPPYRRRKRPS 361
P P +++ +PS
Sbjct: 234 RPRRPLPTQQQPQPS 248
Score = 45.8 bits (107), Expect = 1e-04
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 166 REQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRC-LRGKHARR 221
++Q +R CG C C+ EDCGHC C + P RQ KC R+C LR + + +
Sbjct: 159 QQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLRQCQLRARESYK 217
Query: 222 KGGCDSKMAARRRPGAQPLPPPPPSQSPEPTE 253
+P P P Q P+P++
Sbjct: 218 YFPSSLSPVTPSESLPRPRRPLPTQQQPQPSQ 249
>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 73.9 bits (180), Expect = 4e-13
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
+CPAL GW+R EV R+SG + G D +Y SP+G + RSK +L RYLG + DL+ FDF+
Sbjct: 7 ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66
Query: 67 G 67
G
Sbjct: 67 G 67
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 67.0 bits (162), Expect = 4e-11
Identities = 40/109 (36%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 288 KCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQF--------------AM 333
+CG C CLR DCG C C DKPKFGG N K+Q C +R+C + +
Sbjct: 965 RCGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQCCVYRKCDKIEARKMERLAKKGRTIV 1024
Query: 334 KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRH---HLGPTLKPTLATR 379
K LLP ES + + PP RR R H GP + +L R
Sbjct: 1025 KTLLPWDSDESPEASPGPPGPRRGAGAGGPREEVVAHPGPEEQDSLLQR 1073
Score = 50.1 bits (118), Expect = 5e-06
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 176 CGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRCLRGKHARRKGGCDSKMAAR 232
CG CRGC +DCG C CL P+ P ++Q CV R+C K RK ++A +
Sbjct: 966 CGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQC-CVYRKC--DKIEARK---MERLAKK 1019
Query: 233 RRPGAQPLPPPPPSQSPE--PTEPHP-RALAPSPPAEFIYYCVDEDELQPYTNRRQNRKC 289
R + L P +SPE P P P R P E + +E R+ R+C
Sbjct: 1020 GRTIVKTLLPWDSDESPEASPGPPGPRRGAGAGGPREEVVAHPGPEEQDSLLQRKSARRC 1079
Score = 30.8 bits (68), Expect = 3.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 235 PGAQPLPPPPPSQSPEPTEPHPRALAPSPP 264
P P P PPP P T P P P PP
Sbjct: 405 PLTPPAPSPPPPLPPPSTSPPPPLCPPPPP 434
Score = 30.4 bits (67), Expect = 4.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 216 GKHARRKGGCDSKMAARRRPGAQPLPPP--PPSQSPEPTEPHPRALAPSPP 264
G+ + + M A + A+ PPP PP+ SP P P P + +P PP
Sbjct: 378 GEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPP-STSPPPP 427
Score = 29.6 bits (65), Expect = 7.6
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 235 PGAQPLPP-PPPSQSPEP---------TEPHPRALAPSPPAE 266
P P PP PPPS SP P P P P PPA+
Sbjct: 409 PAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPPPAQ 450
Score = 29.3 bits (64), Expect = 9.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 232 RRRPGAQPLPPPPPSQSPEP 251
R P P PPPPP+ SP P
Sbjct: 616 RELPPPPPAPPPPPAPSPPP 635
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 272 VDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQF 331
+++D+ + N + R+CG C C ++ +CG+C C D KFGGS + +Q C+ R+C
Sbjct: 652 IEKDDREDKENAFKRRRCGVCEVC-QQPECGKCKACKDMVKFGGSGRSKQACQERRCPNM 710
Query: 332 AMK 334
AMK
Sbjct: 711 AMK 713
Score = 38.1 bits (87), Expect = 0.021
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 167 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPG--LRRQWKCVQRRC 213
++ FK R CGVC CQ Q +CG C C + G R + C +RRC
Sbjct: 660 KENAFKRRRCGVCEVCQ-QPECGKCKACKDMVKFGGSGRSKQACQERRC 707
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 272 VDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQF 331
+++D+ + N + R+CG C C ++ +CG+C C D KFGGS + +Q C+ R+C
Sbjct: 636 IEKDDREDKENAFKRRRCGVCEVC-QQPECGKCKACKDMVKFGGSGRSKQACQERRCPNM 694
Query: 332 AMK 334
AMK
Sbjct: 695 AMK 697
Score = 38.1 bits (87), Expect = 0.021
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 167 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPG--LRRQWKCVQRRC 213
++ FK R CGVC CQ Q +CG C C + G R + C +RRC
Sbjct: 644 KENAFKRRRCGVCEVCQ-QPECGKCKACKDMVKFGGSGRSKQACQERRC 691
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 283 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCL 329
RR+ +C C ACLR +CG C FC D KFGG + +Q C RQC+
Sbjct: 607 RRRRTRCRKCEACLRT-ECGECHFCKDMKKFGGPGRMKQSCIMRQCI 652
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b
[Homo sapiens]
Length = 1265
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 283 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCL 329
RR+ +C C ACLR +CG C FC D KFGG + +Q C RQC+
Sbjct: 576 RRRRTRCRKCEACLRT-ECGECHFCKDMKKFGGPGRMKQSCIMRQCI 621
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 53.5 bits (127), Expect = 5e-07
Identities = 40/113 (35%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL----F 62
D P L GW R+ RKSG + G+ D Y +P G RSKVEL Y D +L F
Sbjct: 108 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 167
Query: 63 DFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
DF P+ + KK K P P R R SG R +A E
Sbjct: 168 DFTVTGRGSPSRREQK---PPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSE 217
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 53.5 bits (127), Expect = 5e-07
Identities = 40/113 (35%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL----F 62
D P L GW R+ RKSG + G+ D Y +P G RSKVEL Y D +L F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 63 DFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
DF P+ + KK K P P R R SG R +A E
Sbjct: 156 DFTVTGRGSPSRREQK---PPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSE 205
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 52.4 bits (124), Expect = 1e-06
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 283 RRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQC 328
RR+ +C C AC+R +CG C FC D KFGG + +Q C RQC
Sbjct: 33 RRRRTRCRRCRACVRT-ECGDCHFCRDMKKFGGPGRMKQSCLLRQC 77
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 187 DCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPP- 245
+C CP C + R +RR G+ G S P PLPPPPP
Sbjct: 141 NCWECPRCTQEGRTSKDSGEGPGRRRADNGEEGASLG---SGWKLTEEP---PLPPPPPR 194
Query: 246 SQSPEPTEPHPRALAPSPP 264
+ P P P P + P PP
Sbjct: 195 RKGPLPAGPPPEDV-PGPP 212
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 242 PPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTN--RRQNRKCGACAACLRRM 299
P P P +P PR L P PA P + RR+ +C C AC++
Sbjct: 533 PTIPITKPHTMKPAPR-LTPVRPAA----------ASPIVSGARRRRVRCRKCKACVQG- 580
Query: 300 DCGRCDFCCDKPKFGGSNQKRQKCRWRQCL 329
+CG C +C D KFGG + +Q C RQCL
Sbjct: 581 ECGVCHYCRDMKKFGGPGRMKQSCVLRQCL 610
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 42.0 bits (97), Expect = 0.001
Identities = 67/288 (23%), Positives = 98/288 (34%), Gaps = 44/288 (15%)
Query: 235 PGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAA 294
P P PPPP +Q P P +P P P Y +++L+ ++ +C
Sbjct: 435 PSFPPPPPPPGTQLPPPPPGYPAPKPPVGPQAADIYMQTKNKLRHVETEALKKELSSCDG 494
Query: 295 --CLRRMDCGRCDFCCDK-PKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSP 351
LRR D R K P G ++ +C P + G
Sbjct: 495 HDGLRRQDSSRKPRAFSKQPSTGDYYRQLGRC--------------PGETLAARPGMAHS 540
Query: 352 PPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGG--------GFVLPPP 403
R R +P+ A LGP + +L +A P P G + PPP
Sbjct: 541 EEVRAR-QPARAGCPRLGPAARGSLEGPSAPPQAALLPGNHVPNGCAADPKASRELPPPP 599
Query: 404 GTDLVFLREGASSPVQVPG-PVAASTEALLQEAQCSGL----SWVVALPQ------VKQE 452
L E ASSP P P+ ++ Q S S+ + P + +
Sbjct: 600 PPPPPPLPEAASSPPPAPPLPLESAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEI 659
Query: 453 KADTQDEWTPGTAVLTS-------PVLVPGCPSKAVDPGLPSVKQEPP 493
KA + TP + LT+ P P P +V P L V+ P
Sbjct: 660 KAGKSLKPTPQSKGLTTVFSGIGQPAFQPDSPLPSVSPALSPVRSPTP 707
Score = 30.4 bits (67), Expect = 4.4
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 210 QRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPP----SQSPEPTEPHP 256
Q L G H GC + A R P PPPPP + SP P P P
Sbjct: 572 QAALLPGNHV--PNGCAADPKASRELPPPPPPPPPPLPEAASSPPPAPPLP 620
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 42.0 bits (97), Expect = 0.001
Identities = 58/223 (26%), Positives = 74/223 (33%), Gaps = 37/223 (16%)
Query: 78 PVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPAPG---CCE 134
P+ A KK K S + K G + E + E + D APA PA C
Sbjct: 328 PLPAAGKKDDKASGARNSAKGPEGGEGAECGGASEGGEGQNGGDAAPARPPAGEPRFWCP 387
Query: 135 NCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFK-----SRGCGVCRGCQTQEDCG 189
CG F RQ T A+ R QR FK +R V G C
Sbjct: 388 ECGKGFRRRAHLRQHGVT---HSGARPFQCVRCQREFKRLADLARHAQVHAGGPAPHPCP 444
Query: 190 HCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSP 249
CP LR Q RC R + R + A + + P PPPPP ++
Sbjct: 445 RCPRRFSRAYSLLRHQ------RCHRAELERAA----ALQALQAQAPTSPPPPPPPLKAE 494
Query: 250 EPTEPHPRALA----------------PSPPAEFIYYCVDEDE 276
+ E P LA P+PP C D +
Sbjct: 495 QEEEGLPLPLANIKEEPPSPGTPPQSPPAPPVFLSASCFDSQD 537
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 277 LQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRL 336
L P +++ ++CG C C ++ +CG C +C ++ Q C+ R+C + K
Sbjct: 579 LLPTLEKKKRKRCGVCEPCQQKTNCGECTYCKNR------KNSHQICKKRKCEELKKK-- 630
Query: 337 LPSVWSESEDGAGSPPPYRRRK 358
PSV E + P R +K
Sbjct: 631 -PSVVVPLEVIKENKRPQREKK 651
Score = 33.5 bits (75), Expect = 0.53
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 172 KSRGCGVCRGCQTQEDCGHCPIC 194
K + CGVC CQ + +CG C C
Sbjct: 587 KRKRCGVCEPCQQKTNCGECTYC 609
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 235 PGAQPLPPPPPSQSPEPTEPHPRALAPSPP 264
PG PLPPPPP P+P P P L P PP
Sbjct: 685 PGFPPLPPPPPPPPPQPGFPMPPPLPPPPP 714
Score = 33.1 bits (74), Expect = 0.69
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 239 PLPPPPPSQSPEPTEPHPRALAPSPP 264
P+PPP P P P HP P PP
Sbjct: 704 PMPPPLPPPPPPPPPAHPAVTVPPPP 729
Score = 32.0 bits (71), Expect = 1.5
Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 16/160 (10%)
Query: 342 SESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLP 401
+ S+ G P P RPSS + PT P + + D P G P
Sbjct: 548 TNSQPGFRGPTP--PSSRPSSTGLEDISPTPLPD-SDEDEELDLGLGPRPPPEPG----P 600
Query: 402 PPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVA---LPQVKQEKADTQD 458
P L L + A + + G ++E + + Q SG ++ +P AD
Sbjct: 601 PDPAGL--LSQTAEVALDLVGDRTPTSEKMDEGQQSSGEDMEISDDEMPSAPITSADCPK 658
Query: 459 EW--TPGTAVLTSP-VLVPGCPSKAVDPGLPSVKQEPPDP 495
TPG A + +P VL P P PG P + PP P
Sbjct: 659 PMVVTPGAAAVAAPSVLAPTLPLPP-PPGFPPLPPPPPPP 697
Score = 30.0 bits (66), Expect = 5.8
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 239 PLPPPP--PSQSPEPTEPHPRALAPSPP 264
PLPPPP P P P P P+ P PP
Sbjct: 680 PLPPPPGFPPLPPPPPPPPPQPGFPMPP 707
Score = 29.3 bits (64), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 235 PGAQPLPPPPPSQSPEPTEPHPRALAPSPP 264
P P PPPPP P T P P P+PP
Sbjct: 707 PPLPPPPPPPPPAHPAVTVPPPP--LPAPP 734
>gi|158261990 CXXC finger 5 [Homo sapiens]
Length = 322
Score = 39.7 bits (91), Expect = 0.007
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 281 TNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 334
+ +++ ++CG CA C RR++C +C C ++ K G Q C++R+C + K
Sbjct: 255 SGKKKRKRCGMCAPCRRRINCEQCSSCRNR-KTG-----HQICKFRKCEELKKK 302
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.7 bits (91), Expect = 0.007
Identities = 82/392 (20%), Positives = 127/392 (32%), Gaps = 42/392 (10%)
Query: 78 PVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPAPGCCENCG 137
P + + P+R ++R R +SG R P ++ + T G
Sbjct: 652 PARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRG 711
Query: 138 ISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCRGCQTQEDCGHCPICLRP 197
S S +R R + + R + R R S R + P
Sbjct: 712 RSHSRTPQRRGRSGSSSERKNKSRTS-QRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAK 770
Query: 198 PRPGLRRQWK----CVQRRCLRGKHARRKGGCDSKMAAR---RRPGAQPLPPP------P 244
R LRR C +++ R G K +R RR + PPP P
Sbjct: 771 SRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTP 830
Query: 245 PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRC 304
QS + PHP+ + +PP + +E RR + R
Sbjct: 831 SRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHS 890
Query: 305 DFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSAR 364
P+ S RQ Q +K ++ S S G+ SP P R R + R
Sbjct: 891 CSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAII-SPRQRSHSGSSSPSPSRVTSRTTPRR 949
Query: 365 RHHLGP--TLKPTLATRTAQPDHTQAPTK-------QEAGGGFVLP--------PPGTDL 407
+ P ++ L R + + TK +++ G + P PPG L
Sbjct: 950 SRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSL 1009
Query: 408 VFLREGASSPVQVPGPVAASTEALLQEAQCSG 439
G+ SP P S ++L+Q C G
Sbjct: 1010 ----SGSKSPC----PQEKSKDSLVQ--SCPG 1031
Score = 30.4 bits (67), Expect = 4.4
Identities = 69/308 (22%), Positives = 104/308 (33%), Gaps = 38/308 (12%)
Query: 65 KQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAP 124
++G P PK ++R S P TRK ++ +S R + ET++ T
Sbjct: 1669 RRGSRSSPEPKTKS-RTPPRRRSSRSSPELTRKARLSRRS---RSASSSPETRSRTPPRH 1724
Query: 125 ASFPA---PGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCRG 181
P+ P E S R KT + R+ QR R
Sbjct: 1725 RRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRT 1784
Query: 182 CQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDS-KMAARRRPGAQPL 240
+ ++ G R + R +RR G H+R +S + ++RRR G
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRT 1844
Query: 241 PPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMD 300
PP +S T P P + S P T+RR + + RR
Sbjct: 1845 PPTSRKRSRSRTSPAPWKRSRS-------------RASPATHRRSRSRTPLIS---RRRS 1888
Query: 301 CGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKR- 359
R S R++ R R + R S S + +PP RRR R
Sbjct: 1889 RSRT-----------SPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRS 1937
Query: 360 --PSSARR 365
P++ RR
Sbjct: 1938 RTPTTRRR 1945
>gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens]
Length = 580
Score = 38.9 bits (89), Expect = 0.013
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL----FDF----K 65
GW+R R G T GR D Y+ SP G + RSK L YL + +L FDF K
Sbjct: 89 GWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSK 148
Query: 66 QGI 68
+GI
Sbjct: 149 RGI 151
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 38.9 bits (89), Expect = 0.013
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 235 PGAQPLPPPPPSQSPEPTEPHPRALAP--SPPAEFIYYCVDEDELQPYTNRRQNRKCGAC 292
P PLPPPPP P P P P A AP +PP E ++ EL +K
Sbjct: 1496 PPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETA 1555
Query: 293 AAC 295
A C
Sbjct: 1556 AVC 1558
Score = 34.7 bits (78), Expect = 0.24
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 235 PGAQP-LPPPPPSQSPEPTEPHPRALAPSPP 264
P QP LP PPP +P P+ P P L P PP
Sbjct: 1476 PPPQPALPSPPPLVAPTPSSPPPPPLPPPPP 1506
Score = 33.9 bits (76), Expect = 0.40
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 214 LRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPP 264
L G + G +P P P P P P P P P+ PSPP
Sbjct: 1436 LPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPP 1486
Score = 30.0 bits (66), Expect = 5.8
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251
P+ L PP P L V + K G A R QP PPPPP P P
Sbjct: 791 PLVLPPPPPQLLPS---VLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMP 847
Query: 252 --TEPHPRA-----LAPSP 263
E H R+ APSP
Sbjct: 848 LQLEAHLRSHGLEPAAPSP 866
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 38.5 bits (88), Expect = 0.016
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 230 AARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPA 265
A + P QP PPPPP Q P P P P+A PPA
Sbjct: 2502 AVAQPPPPQPQPPPPP-QQPPPPLPQPQAAGSQPPA 2536
Score = 30.0 bits (66), Expect = 5.8
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 405 TDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGT 464
T + +++ AS+ Q A T+A Q + V A QV Q+K Q T +
Sbjct: 3018 TPVASIQQVASASQQASPQTVALTQATAAGQQVQMIPAVTATAQVVQQKLIQQQVVTTAS 3077
Query: 465 AVLTSPVLVPGCPSKAVDPGLPSVKQEPP 493
A P+ PG P+ A P + P
Sbjct: 3078 A----PLQTPGAPNPAQVPASSDSPSQQP 3102
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 38.1 bits (87), Expect = 0.021
Identities = 48/181 (26%), Positives = 64/181 (35%), Gaps = 29/181 (16%)
Query: 89 PSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPA-PGCCENCGISFSGDGTQR 147
PS P + P GE ++E +E + P PA P C C SF G
Sbjct: 20 PSSPGSLSAPR-SPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKLP 78
Query: 148 QRLK---TLCKDCRAQRIAFNREQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRR 204
+RL C +C A+ + G G + CP+C P R RR
Sbjct: 79 KRLDCGHVFCLECLARL--------SLATAGGG---------NAVACPVCRAPTRLAPRR 121
Query: 205 QWKCVQRRC-LRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSP 263
+ + L + AR + RR G L PPPP P +A AP P
Sbjct: 122 GLPALPTQSGLLPRDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPR------KARAPPP 175
Query: 264 P 264
P
Sbjct: 176 P 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,882,792
Number of Sequences: 37866
Number of extensions: 1923855
Number of successful extensions: 23624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 17281
Number of HSP's gapped (non-prelim): 5500
length of query: 556
length of database: 18,247,518
effective HSP length: 107
effective length of query: 449
effective length of database: 14,195,856
effective search space: 6373939344
effective search space used: 6373939344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.