Guide to the Human Genome
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Name: C1orf51 Sequence: fasta or formatted (385aa) NCBI GI: 21389605
Description:

hypothetical protein LOC148523

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         19           2
 C cysteine            1.3          5           1
 D aspartate           3.4         13           1
 E glutamate           3.4         13           1
 F phenylalanine       3.1         12           1
 G glycine             9.6         37           3
 H histidine           4.4         17           2
 I isoleucine          3.1         12           1
 K lysine              4.4         17           1
 L leucine             9.4         36           2
 M methionine          2.9         11           1
 N asparagine          1.8          7           1
 P proline            11.2         43           2
 Q glutamine           6.0         23           2
 R arginine            4.9         19           1
 S serine             12.7         49           3
 T threonine           7.3         28           2
 V valine              3.6         14           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC148523 
RAPH1                 0.019   Ras association and pleckstrin homology domains 1 is...
SOS1                  0.018   son of sevenless homolog 1 
GAS2L1                0.017   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.017   growth arrest-specific 2 like 1 isoform a 
MAST4                 0.016   microtubule associated serine/threonine kinase fami...
SRRM2                 0.014   splicing coactivator subunit SRm300 
PPRC1                 0.014   peroxisome proliferator-activated receptor gamma, co...
BCL9                  0.014   B-cell CLL/lymphoma 9 
NFE2L1                0.013   nuclear factor erythroid 2-like 1 
MLL                   0.013   myeloid/lymphoid or mixed-lineage leukemia protein [...
FLG                   0.013   filaggrin 
PPP1R10               0.013   protein phosphatase 1, regulatory subunit 10 
ARHGAP17              0.013   nadrin isoform 1 
ARHGAP17              0.013   nadrin isoform 2 
SAP130                0.012   Sin3A-associated protein, 130kDa isoform b 
SAP130                0.012   Sin3A-associated protein, 130kDa isoform a 
RSBN1                 0.012   round spermatid basic protein 1 
MUC2                  0.012   mucin 2 precursor 
LOC100294420          0.012   PREDICTED: similar to mucin 2 
TBC1D10B              0.012   TBC1 domain family, member 10B 
LOC100292172          0.010   PREDICTED: hypothetical protein 
LOC100289763          0.010   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.010   PREDICTED: hypothetical protein XP_002343623 
MUC4                  0.010   mucin 4 isoform a 
DOK7                  0.010   downstream of tyrosine kinase 7 
SETD1A                0.010   SET domain containing 1A 
KIAA1522              0.010   hypothetical protein LOC57648 
CREBBP                0.010   CREB binding protein isoform b 
CREBBP                0.010   CREB binding protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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