Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HES6 Sequence: fasta or formatted (224aa) NCBI GI: 21361763
Description:

hairy and enhancer of split 6 isoform a

Referenced in:

Notch Pathway
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [222aa] hairy and enhancer of split 6 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         31           2
 C cysteine            1.3          3           1
 D aspartate           4.9         11           2
 E glutamate          10.3         23           2
 F phenylalanine       1.3          3           1
 G glycine             8.9         20           2
 H histidine           1.3          3           1
 I isoleucine          2.2          5           1
 K lysine              2.2          5           2
 L leucine            11.2         25           3
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline             8.9         20           2
 Q glutamine           4.5         10           1
 R arginine            9.8         22           2
 S serine              5.8         13           2
 T threonine           3.1          7           2
 V valine              5.4         12           1
 W tryptophan          1.8          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hairy and enhancer of split 6 isoform a 
HES6                  0.981   hairy and enhancer of split 6 isoform b 
HES1                  0.174   hairy and enhancer of split 1 
HES4                  0.151   hairy and enhancer of split 4 isoform 1 
HES4                  0.151   hairy and enhancer of split 4 isoform 2 
HES2                  0.120   hairy and enhancer of split homolog 2 
HEY1                  0.094   hairy/enhancer-of-split related with YRPW motif 1 i...
HEY1                  0.092   hairy/enhancer-of-split related with YRPW motif 1 i...
HEY2                  0.089   hairy/enhancer-of-split related with YRPW motif 2 [Ho...
HES7                  0.071   hairy and enhancer of split 7 
HES5                  0.068   hairy and enhancer of split 5 
HEYL                  0.064   hairy/enhancer-of-split related with YRPW motif-like ...
HELT                  0.059   HES/HEY-like transcription factor 
BHLHE40               0.054   basic helix-loop-helix family, member e40 
HES3                  0.052   hairy and enhancer of split 3 
BHLHE41               0.040   basic helix-loop-helix domain containing, class B, 3...
TNKS1BP1              0.028   tankyrase 1-binding protein 1 
COL15A1               0.026   alpha 1 type XV collagen precursor 
COL5A1                0.026   alpha 1 type V collagen preproprotein 
MAPK8IP2              0.026   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.026   mitogen-activated protein kinase 8 interacting protei...
SREBF1                0.024   sterol regulatory element binding transcription fact...
SREBF1                0.024   sterol regulatory element binding transcription fact...
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
KHSRP                 0.024   KH-type splicing regulatory protein 
ZFPM1                 0.024   zinc finger protein, multitype 1 
LOC645602             0.024   PREDICTED: hypothetical protein 
LOC645602             0.024   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press