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Search of human proteins with 113429379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens] 282 5e-77
gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens] 282 5e-77
gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens] 278 1e-75
gi|46094070 hypothetical protein LOC80097 [Homo sapiens] 137 2e-33
gi|145976946 hypothetical protein LOC653784 [Homo sapiens] 134 3e-32
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 38 0.002
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 38 0.002
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 33 0.098
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 32 0.22
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 32 0.22
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 31 0.28
gi|46094081 development and differentiation enhancing factor 1 [... 30 0.49
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 30 0.63
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|148746220 spermatogenesis associated, serine-rich 2 [Homo sap... 29 1.4
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 29 1.4
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 29 1.4
gi|66932988 filamin-binding LIM protein-1 isoform c [Homo sapiens] 28 1.8
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 28 1.8
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 28 1.8
gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens] 28 2.4
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 28 2.4
gi|189491748 ataxin 1 [Homo sapiens] 28 3.1
gi|51479158 ataxin 1 [Homo sapiens] 28 3.1
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|188536004 zinc finger protein 469 [Homo sapiens] 28 3.1
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 27 4.1
gi|4557733 latent transforming growth factor beta binding protei... 27 4.1
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239753708 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
>gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 282 bits (722), Expect = 5e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 282 bits (722), Expect = 5e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 278 bits (710), Expect = 1e-75
Identities = 136/138 (98%), Positives = 136/138 (98%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPE GRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|46094070 hypothetical protein LOC80097 [Homo sapiens]
Length = 158
Score = 137 bits (346), Expect = 2e-33
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALL 101
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPE RGRNK S +LG AL
Sbjct: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALA 122
Query: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
E S R+GSSQR PRQPSATRLPK GGPG + RGST
Sbjct: 123 ERSSREGSSQRMPRQPSATRLPKGGGPG-KSPTRGST 158
>gi|145976946 hypothetical protein LOC653784 [Homo sapiens]
Length = 158
Score = 134 bits (336), Expect = 3e-32
Identities = 71/97 (73%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALL 101
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPE RGR+K S +LG V AL
Sbjct: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRDKGSAALGGVLALA 122
Query: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
E S +GSSQR PRQPSATRLPK GGPG + +GST
Sbjct: 123 ERSNHEGSSQRMPRQPSATRLPKGGGPG-KSPTQGST 158
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGR--VPAL------------LECSGRKGS 109
+AS QD+ A L + P R R + SL R +PAL GRKGS
Sbjct: 179 LASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPVPSPAPGRKGS 238
Query: 110 SQRTPRQPSATRLPKWGGP 128
Q P P RLP +GGP
Sbjct: 239 IQDRPLPPPPPRLPGYGGP 257
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGR--VPAL------------LECSGRKGS 109
+AS QD+ A L + P R R + SL R +PAL GRKGS
Sbjct: 272 LASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPVPSPAPGRKGS 331
Query: 110 SQRTPRQPSATRLPKWGGP 128
Q P P RLP +GGP
Sbjct: 332 IQDRPLPPPPPRLPGYGGP 350
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 32.7 bits (73), Expect = 0.098
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 4 KYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQR 63
+YGGS+YS S G S ++HS +HS S R
Sbjct: 184 RYGGSHYS-----SSGYSNSRYSRYHSSRSHSKSGSS-------------------TSSR 219
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGS-SQRTPRQP 117
AS + S+A ++SV R R++ S+ P + + + S S+R P+ P
Sbjct: 220 SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 31.6 bits (70), Expect = 0.22
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 45 NVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECS 104
++ PV Q + C GQ++ P+ S T++ ++R RN S+ LE +
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYSPK--RCHSPRVTTISDQRKRNSTDYSIRISSITLEDA 597
Query: 105 GRKGSSQRTPRQPSATRLPKWGGPGRRQQVRG 136
G + P+ + GPG + VRG
Sbjct: 598 GTYYCMKLRRAIPANVEIK--SGPGTQMSVRG 627
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 31.6 bits (70), Expect = 0.22
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 45 NVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECS 104
++ PV Q + C GQ++ P+ S T++ ++R RN S+ LE +
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYSPK--RCHSPRVTTISDQRKRNSTDYSIRISSITLEDA 597
Query: 105 GRKGSSQRTPRQPSATRLPKWGGPGRRQQVRG 136
G + P+ + GPG + VRG
Sbjct: 598 GTYYCMKLRRAIPANVEIK--SGPGTQMSVRG 627
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 31.2 bits (69), Expect = 0.28
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 9 YYSYVDAESKGQSPEDSWKH-HSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQRMASE 67
Y + E +G+ PE +++H S + HS Q ++Q +A A +G R S
Sbjct: 220 YRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSS 279
Query: 68 PQDSAAVSLHTTS 80
DS + S T+S
Sbjct: 280 SSDSISSSSSTSS 292
>gi|46094081 development and differentiation enhancing factor 1 [Homo
sapiens]
Length = 1129
Score = 30.4 bits (67), Expect = 0.49
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 37 QLQSQVKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGR 96
Q S+V L P+ + ++S A Q+ ASE + +L T VP R N + R
Sbjct: 1012 QQPSEVTLKSHPLDLSPNVQSRDAIQKQASEDSNDLTPTLPETPVPLPRKINTGKNKVRR 1071
Query: 97 VPALLEC 103
V + +C
Sbjct: 1072 VKTIYDC 1078
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 30.0 bits (66), Expect = 0.63
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 95 GRVPAL-LECSGRKGSSQRTPRQPSATRLPKWGGPG 129
G P L L G GS TP + SA R P+ GGPG
Sbjct: 403 GAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPG 438
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 29.3 bits (64), Expect = 1.1
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 56 KSMCAGQRMASEPQDSAAV-SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTP 114
K+ AG + Q AAV + + RRG+ A G K +
Sbjct: 334 KAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAK 393
Query: 115 RQPSATRLPKWGGPGRRQQ 133
R+ + P+W P RR Q
Sbjct: 394 RRGDGRKKPRWQNPRRRAQ 412
>gi|148746220 spermatogenesis associated, serine-rich 2 [Homo
sapiens]
Length = 545
Score = 28.9 bits (63), Expect = 1.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 66 SEPQDSAAVSLHT-TSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSATRLP- 123
S P D++A S T S P NK + + G PA + +S P QP LP
Sbjct: 393 SSPSDASAASSSTCASPPSLTSANKKNFAPGETPAAI------ANSSGQPYQPLREVLPG 446
Query: 124 -KWGGPGRRQQ 133
+ GG G R Q
Sbjct: 447 NRRGGQGYRPQ 457
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 58 MCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRV-PALLECSGRKGSSQRTPRQ 116
+CAG P A ++ RNK+ + + P+++ GS+ R P +
Sbjct: 218 VCAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPER 277
Query: 117 PSATRLPKWGGPGRRQQ 133
P + P PGR Q
Sbjct: 278 PGPSNPPVGPAPGRHPQ 294
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 28.9 bits (63), Expect = 1.4
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 81 VPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPR-QPSATRLPK-WGGPGRRQQ 133
VP +RGR + L VPA + ++G S P +P+ L + WGGPG R Q
Sbjct: 33 VPGQRGRGARAAPL--VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQ 85
>gi|66932988 filamin-binding LIM protein-1 isoform c [Homo sapiens]
Length = 276
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKG------SSQRTPRQP 117
MAS+P+ A S+ T P RR ++ C R+G + +TP
Sbjct: 1 MASKPEKRVASSVFITLAPPRR-----DVAVAEEVRQAVCEARRGRPWEAPAPMKTPEAG 55
Query: 118 SATRLPKWGGPGR 130
A R W PGR
Sbjct: 56 LAGRPSPWTTPGR 68
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKG------SSQRTPRQP 117
MAS+P+ A S+ T P RR ++ C R+G + +TP
Sbjct: 1 MASKPEKRVASSVFITLAPPRR-----DVAVAEEVRQAVCEARRGRPWEAPAPMKTPEAG 55
Query: 118 SATRLPKWGGPGR 130
A R W PGR
Sbjct: 56 LAGRPSPWTTPGR 68
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 64 MASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKG------SSQRTPRQP 117
MAS+P+ A S+ T P RR ++ C R+G + +TP
Sbjct: 1 MASKPEKRVASSVFITLAPPRR-----DVAVAEEVRQAVCEARRGRPWEAPAPMKTPEAG 55
Query: 118 SATRLPKWGGPGR 130
A R W PGR
Sbjct: 56 LAGRPSPWTTPGR 68
>gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens]
Length = 653
Score = 28.1 bits (61), Expect = 2.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 56 KSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLEC 103
KS+C+G R+ + D A V L T + NKD +P L +C
Sbjct: 459 KSICSGGRLRAHAHDVAQVFLDETMIGILNENNKDL----HIPELRDC 502
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 55 LKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTP 114
+K+ + +++ EP+ + + P+ + ++ S G P + R R
Sbjct: 55 MKNATSSKQLPLEPESPSGQVGPRPAPPQEESPSSEAKSRGPTPPAM--GPRDARPPRRS 112
Query: 115 RQPSATRLPKWGGPGRRQQVR 135
QPS T +P P +Q+V+
Sbjct: 113 SQPSPTAVPASDSPPTKQEVK 133
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.7 bits (60), Expect = 3.1
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 43 KLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVP-----------ERRGRNKDS 91
KL+V V + LK++ G +P D A+V L + + G N+ S
Sbjct: 675 KLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSRHRYAEQENGINQGS 734
Query: 92 TSLGRVPALLECSGRKGS------SQRTPRQPSATRLPKWGGPGRRQ 132
+ L+ + G ++ P +P+ATR +W P R+
Sbjct: 735 AQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESRK 781
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.7 bits (60), Expect = 3.1
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 43 KLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVP-----------ERRGRNKDS 91
KL+V V + LK++ G +P D A+V L + + G N+ S
Sbjct: 675 KLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSRHRYAEQENGINQGS 734
Query: 92 TSLGRVPALLECSGRKGS------SQRTPRQPSATRLPKWGGPGRRQ 132
+ L+ + G ++ P +P+ATR +W P R+
Sbjct: 735 AQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESRK 781
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 27.7 bits (60), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 86 GRNKDSTSLGR-----VPALLEC---SGRKGSSQRTPRQPSATRLP--KWGGPG 129
G + T LGR + AL+ C R GS++R QP+ LP +W PG
Sbjct: 775 GLDTSGTLLGRPCLEPISALMICVEADTRPGSARRLTLQPAGASLPSREWSSPG 828
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 27.7 bits (60), Expect = 3.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 54 MLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRT 113
+L C G R A Q+ A + P N++S +L AL R GS RT
Sbjct: 2006 VLLEKCKGSRAAMSLQEEAEPT------PSPPSPNRESLAL----ALTAAHSRSGSEGRT 2055
Query: 114 PRQPSATRLPK 124
P + S+ L K
Sbjct: 2056 PERASSPGLNK 2066
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 86 GRNKDSTSLGRVP----ALLECSGRKGSSQRTPRQPSATRLPKWGGP 128
G N+D + VP G + SSQR+P P+ R P+ G P
Sbjct: 758 GENRDVEAQRLVPDGDGRTSPLGGARSSSQRSPVGPAGVRSPRPGSP 804
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 27.3 bits (59), Expect = 4.1
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 32 AAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDS 91
AA + ++ S + APVA Q ++ G P ++ A RR
Sbjct: 62 AAAAAKVYSLFREQDAPVAGLQPVERAQPGWGSPRRPTEAEA----------RRPSRAQQ 111
Query: 92 TSLGRVPALLECSGRKGSSQRTPRQPSATRLPKWGGPGR 130
+ + PA S G Q PR +A LP+ G P R
Sbjct: 112 SRRVQPPAQTRRSTPLGQQQPAPRTRAAPALPRLGTPQR 150
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 4.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 57 SMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQ 116
S C GQ ++ + VS S +R + + + PA + S +G ++ R+
Sbjct: 43 SDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR 102
Query: 117 PSATRLPKWGGP 128
PS+ P GP
Sbjct: 103 PSSADRPLAPGP 114
>gi|239753708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 75 SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT---------RLPKW 125
SL T S P RR S LGRV L GR G +R +A RL KW
Sbjct: 58 SLATCSSPARRNAQFASLVLGRV-IRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116
Query: 126 GGPGR 130
G GR
Sbjct: 117 IGCGR 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.125 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,924,270
Number of Sequences: 37866
Number of extensions: 252967
Number of successful extensions: 756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 56
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.