Guide to the Human Genome
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Name: LOC100287918 Sequence: fasta or formatted (177aa) NCBI GI: 239742982
Description:

PREDICTED: hypothetical protein XP_002342710

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         21           4
 C cysteine            0.6          1           1
 D aspartate           6.2         11           1
 E glutamate           5.1          9           2
 F phenylalanine       3.4          6           2
 G glycine             6.2         11           1
 H histidine           1.7          3           1
 I isoleucine          7.3         13           2
 K lysine              8.5         15          10
 L leucine             6.2         11           2
 M methionine          2.3          4           1
 N asparagine          6.2         11           2
 P proline             4.5          8           2
 Q glutamine           7.3         13           3
 R arginine            1.7          3           1
 S serine              7.9         14           2
 T threonine           4.5          8           1
 V valine              4.5          8           2
 W tryptophan          2.3          4           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342710 
LOC100291233          0.801   PREDICTED: hypothetical protein XP_002346868 
TBL1XR1               0.605   transducin (beta)-like 1 X-linked receptor 1 
LOC100292902          0.554   PREDICTED: similar to transducin (beta)-like 1 X-li...
TBL1Y                 0.488   transducin beta-like 1Y 
TBL1Y                 0.488   transducin beta-like 1Y 
TBL1Y                 0.488   transducin beta-like 1Y 
TBL1X                 0.488   transducin beta-like 1X isoform b 
TBL1X                 0.488   transducin beta-like 1X isoform b 
TBL1X                 0.488   transducin beta-like 1X isoform a 
TBL1X                 0.488   transducin beta-like 1X isoform a 
IQCA1                 0.039   IQ motif containing with AAA domain 1 
DDX18                 0.027   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform a ...
GPATCH4               0.024   G patch domain containing 4 isoform 2 
GPATCH4               0.024   G patch domain containing 4 isoform 1 
LOC100133698          0.021   PREDICTED: hypothetical protein 
BAZ1B                 0.021   bromodomain adjacent to zinc finger domain, 1B [Homo...
SPG20                 0.021   spartin 
SPG20                 0.021   spartin 
SPG20                 0.021   spartin 
SPG20                 0.021   spartin 
PA2G4                 0.021   ErbB3-binding protein 1 
GOLGA2                0.018   Golgi autoantigen, golgin subfamily a, 2 
RBBP6                 0.018   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.018   retinoblastoma-binding protein 6 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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