Search of human proteins with 210147514

Search of human proteins with 210147514

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|210147514 ring finger protein 187 [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|210147514 ring finger protein 187 [Homo sapiens]                   257   2e-69
gi|198442878 tripartite motif-containing 17 isoform 3 [Homo sapi...    49   8e-07
gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens]    49   8e-07
gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens]    49   8e-07
gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens]     49   8e-07
gi|21630277 tripartite motif-containing 11 [Homo sapiens]              49   8e-07
gi|112421127 tripartite motif-containing 58 [Homo sapiens]             47   4e-06
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s...    44   4e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s...    44   4e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s...    44   4e-05
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s...    43   6e-05
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa...    43   6e-05
gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]      42   1e-04
gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens]       42   1e-04
gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens]       42   1e-04
gi|51477690 tripartite motif-containing 6 and tripartite motif-c...    42   1e-04
gi|117938316 tripartite motif-containing 22 [Homo sapiens]             40   4e-04
gi|15208660 tripartite motif protein 21 [Homo sapiens]                 39   0.001
gi|5454014 tripartite motif-containing 38 [Homo sapiens]               38   0.002
gi|169202730 PREDICTED: similar to hCG1802386 [Homo sapiens]           38   0.002
gi|89034675 PREDICTED: similar to hCG1802386 [Homo sapiens]            38   0.002
gi|51470879 PREDICTED: similar to hCG1802386 [Homo sapiens]            38   0.002
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa...    38   0.002
gi|119120918 coiled-coil domain containing 64 [Homo sapiens]           36   0.007
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        35   0.012
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        35   0.012
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         35   0.012
gi|41322910 plectin 1 isoform 7 [Homo sapiens]                         35   0.012
gi|41322916 plectin 1 isoform 6 [Homo sapiens]                         35   0.012
gi|41322908 plectin 1 isoform 3 [Homo sapiens]                         35   0.012

>gi|210147514 ring finger protein 187 [Homo sapiens]
          Length = 126

 Score =  257 bits (656), Expect = 2e-69
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MAAGPEPPEWEPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
           MAAGPEPPEWEPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK
Sbjct: 1   MAAGPEPPEWEPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60

Query: 61  KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSELEKKHRNLG 120
           KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSELEKKHRNLG
Sbjct: 61  KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSELEKKHRNLG 120

Query: 121 LSMLLQ 126
           LSMLLQ
Sbjct: 121 LSMLLQ 126


>gi|198442878 tripartite motif-containing 17 isoform 3 [Homo
           sapiens]
          Length = 343

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 27  VEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEK 86
           +E +R+ +    +L  + E + A W+G V +RR++ + +++K+  + VEEE+  LQ  E 
Sbjct: 150 MEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALET 209

Query: 87  EEGLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           EE           E    L ++V+ L+++  +L L +L
Sbjct: 210 EE----------EETASRLRESVACLDRQGHSLELLLL 237


>gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens]
          Length = 450

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 27  VEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEK 86
           +E +R+ +    +L  + E + A W+G V +RR++ + +++K+  + VEEE+  LQ  E 
Sbjct: 123 MEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALET 182

Query: 87  EEGLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           EE           E    L ++V+ L+++  +L L +L
Sbjct: 183 EE----------EETASRLRESVACLDRQGHSLELLLL 210


>gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens]
          Length = 477

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 27  VEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEK 86
           +E +R+ +    +L  + E + A W+G V +RR++ + +++K+  + VEEE+  LQ  E 
Sbjct: 150 MEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALET 209

Query: 87  EEGLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           EE           E    L ++V+ L+++  +L L +L
Sbjct: 210 EE----------EETASRLRESVACLDRQGHSLELLLL 237


>gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens]
          Length = 477

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 27  VEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEK 86
           +E +R+ +    +L  + E + A W+G V +RR++ + +++K+  + VEEE+  LQ  E 
Sbjct: 150 MEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALET 209

Query: 87  EEGLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           EE           E    L ++V+ L+++  +L L +L
Sbjct: 210 EE----------EETASRLRESVACLDRQGHSLELLLL 237


>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
          Length = 468

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 18  LRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEE 77
           L+ K  K S+E +RK + DA     QA+    +W+  V  +R+  L ++++LR    EEE
Sbjct: 135 LKAKLEK-SLEHLRKQMQDALLFQAQADETCVLWQKMVESQRQNVLGEFERLRRLLAEEE 193

Query: 78  EHFLQEAEKE--EGLP--EDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           +  LQ  E+E  E LP   +  A   ++   L + ++ELE + +   L +L
Sbjct: 194 QQLLQRLEEEELEVLPRLREGAAHLGQQSAHLAELIAELEGRCQLPALGLL 244


>gi|112421127 tripartite motif-containing 58 [Homo sapiens]
          Length = 486

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 26  SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAE 85
           ++E+MRK+L DA            +WK  V  +R++   +++K R F  +EE+  L+  E
Sbjct: 146 ALELMRKELEDALTQEANVGKKTVIWKEKVEMQRQRFRLEFEKHRGFLAQEEQRQLRRLE 205

Query: 86  KEEGLPEDELADPTERF----RSLLQAVSELEKKHRNLGLSML 124
            EE      L +   R     ++L +   EL+++ +   L +L
Sbjct: 206 AEERATLQRLRESKSRLVQQSKALKELADELQERCQRPALGLL 248


>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
           sapiens]
          Length = 493

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 24  KGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQE 83
           + ++E++R+   +A +L        A WK  +   +   L D+++LR     EE + LQ 
Sbjct: 143 QAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQN 202

Query: 84  AEKEEGLPEDELADPT-------ERFRSLLQAVSELEKKHRNLGLSMLL 125
            EKEE   ED L   T       ++ +SL + +S+LE  HR  G  M L
Sbjct: 203 LEKEE---EDILKSLTNSETEMVQQTQSLRELISDLE--HRLQGSVMEL 246


>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
           sapiens]
          Length = 326

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 24  KGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQE 83
           + ++E++R+   +A +L        A WK  +   +   L D+++LR     EE + LQ 
Sbjct: 143 QAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQN 202

Query: 84  AEKEEGLPEDELADPT-------ERFRSLLQAVSELEKKHRNLGLSMLL 125
            EKEE   ED L   T       ++ +SL + +S+LE  HR  G  M L
Sbjct: 203 LEKEE---EDILKSLTNSETEMVQQTQSLRELISDLE--HRLQGSVMEL 246


>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
           sapiens]
          Length = 347

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 24  KGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQE 83
           + ++E++R+   +A +L        A WK  +   +   L D+++LR     EE + LQ 
Sbjct: 143 QAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQN 202

Query: 84  AEKEEGLPEDELADPT-------ERFRSLLQAVSELEKKHRNLGLSMLL 125
            EKEE   ED L   T       ++ +SL + +S+LE  HR  G  M L
Sbjct: 203 LEKEE---EDILKSLTNSETEMVQQTQSLRELISDLE--HRLQGSVMEL 246


>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
           sapiens]
          Length = 500

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 48  AAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQ 107
           A  WK  +  +R +  T++ KL  F VEEE+ FLQ   KEE   + +L + T +    + 
Sbjct: 185 ATQWKDKIKSQRMRISTEFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIA 244

Query: 108 AVSEL 112
           ++ +L
Sbjct: 245 SLKKL 249


>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
           sapiens]
          Length = 474

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 48  AAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQ 107
           A  WK  +  +R +  T++ KL  F VEEE+ FLQ   KEE   + +L + T +    + 
Sbjct: 159 ATQWKDKIKSQRMRISTEFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIA 218

Query: 108 AVSEL 112
           ++ +L
Sbjct: 219 SLKKL 223


>gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]
          Length = 270

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%)

Query: 30  MRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEG 89
           ++K+  +A  L          WK  V   R++  T++ +LR+    EE+  LQ  E+EE 
Sbjct: 151 LKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK 210

Query: 90  LPEDELADPTERFRSLLQAVSEL 112
              D+ A+  +      Q V EL
Sbjct: 211 KTLDKFAEAEDELVQQKQLVREL 233


>gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens]
          Length = 488

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%)

Query: 30  MRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEG 89
           ++K+  +A  L          WK  V   R++  T++ +LR+    EE+  LQ  E+EE 
Sbjct: 151 LKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK 210

Query: 90  LPEDELADPTERFRSLLQAVSEL 112
              D+ A+  +      Q V EL
Sbjct: 211 KTLDKFAEAEDELVQQKQLVREL 233


>gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens]
          Length = 488

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%)

Query: 30  MRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEG 89
           ++K+  +A  L          WK  V   R++  T++ +LR+    EE+  LQ  E+EE 
Sbjct: 151 LKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK 210

Query: 90  LPEDELADPTERFRSLLQAVSEL 112
              D+ A+  +      Q V EL
Sbjct: 211 KTLDKFAEAEDELVQQKQLVREL 233


>gi|51477690 tripartite motif-containing 6 and tripartite
           motif-containing 34 [Homo sapiens]
          Length = 842

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%)

Query: 30  MRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEG 89
           ++K+  +A  L          WK  V   R++  T++ +LR+    EE+  LQ  E+EE 
Sbjct: 505 LKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK 564

Query: 90  LPEDELADPTERFRSLLQAVSEL 112
              D+ A+  +      Q V EL
Sbjct: 565 KTLDKFAEAEDELVQQKQLVREL 587



 Score = 33.5 bits (75), Expect = 0.044
 Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 26  SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAE 85
           S++ ++ +  +A  L          WK  +   R +  T++ +LR      E+  L++ E
Sbjct: 175 SLKKLKNEEQEAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLE 234

Query: 86  KEE----GLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
           +EE     + E+   D   + +SL + +S+LE++ +   + +L
Sbjct: 235 QEEKKGLRIIEEAENDLVHQTQSLRELISDLERRCQGSTMELL 277


>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
          Length = 498

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 13  RWRKALRGKENKGSVEIMR--KDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLR 70
           R  + ++  + K  V + R  K+  +A  L          WK ++   R+K L  + ++R
Sbjct: 132 RINEVVKECQEKLQVALQRLIKEDQEAEKLEDDIRQERTAWKNYIQIERQKILKGFNEMR 191

Query: 71  AFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQ----AVSELEKKHRNLGLSML 124
                EE+  LQ+ E+ E    D LA  T++     Q     +S+L+++ R   + ML
Sbjct: 192 VILDNEEQRELQKLEEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRRLRGSSVEML 249


>gi|15208660 tripartite motif protein 21 [Homo sapiens]
          Length = 475

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 30  MRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEE- 88
           +R+    A  L  +     A WK  V  ++ +   ++ + + F VEEE+  LQE EK+E 
Sbjct: 146 LRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHAEFVQQKNFLVEEEQRQLQELEKDER 205

Query: 89  ------GLPEDELADPTERFRSLLQAVSELEKKHRNLGLSML 124
                 G  E +LA   ++ ++L + +SEL+++  +  L +L
Sbjct: 206 EQLRILGEKEAKLA---QQSQALQELISELDRRCHSSALELL 244


>gi|5454014 tripartite motif-containing 38 [Homo sapiens]
          Length = 465

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 51  WKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTE----RFRSLL 106
           WK  V  +R+K  +D+K L+ F  EEE+ +L   EKEE      L D       +   L 
Sbjct: 168 WKEKVQIQRQKIRSDFKNLQCFLHEEEKSYLWRLEKEEQQTLSRLRDYEAGLGLKSNELK 227

Query: 107 QAVSELEKK 115
             + ELE+K
Sbjct: 228 SHILELEEK 236


>gi|169202730 PREDICTED: similar to hCG1802386 [Homo sapiens]
          Length = 452

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 7   PPEW--EPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALT 64
           P EW  E R  + LR  ++     + RK   + R+L+  A +    WK +V  R +    
Sbjct: 128 PTEWAAEERREELLRKMQS-----LWRKMCENHRNLN-MATNRIRCWKDYVSLRIEAIRA 181

Query: 65  DYKKLRAFFVEEEEHFLQEAEKE 87
           +Y K+ AFF EEE+  L+  +KE
Sbjct: 182 EYHKMVAFFHEEEQRHLERLQKE 204


>gi|89034675 PREDICTED: similar to hCG1802386 [Homo sapiens]
          Length = 452

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 7   PPEW--EPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALT 64
           P EW  E R  + LR  ++     + RK   + R+L+  A +    WK +V  R +    
Sbjct: 128 PTEWAAEERREELLRKMQS-----LWRKMCENHRNLN-MATNRIRCWKDYVSLRIEAIRA 181

Query: 65  DYKKLRAFFVEEEEHFLQEAEKE 87
           +Y K+ AFF EEE+  L+  +KE
Sbjct: 182 EYHKMVAFFHEEEQRHLERLQKE 204


>gi|51470879 PREDICTED: similar to hCG1802386 [Homo sapiens]
          Length = 452

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 7   PPEW--EPRWRKALRGKENKGSVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRKKALT 64
           P EW  E R  + LR  ++     + RK   + R+L+  A +    WK +V  R +    
Sbjct: 128 PTEWAAEERREELLRKMQS-----LWRKMCENHRNLN-MATNRIRCWKDYVSLRIEAIRA 181

Query: 65  DYKKLRAFFVEEEEHFLQEAEKE 87
           +Y K+ AFF EEE+  L+  +KE
Sbjct: 182 EYHKMVAFFHEEEQRHLERLQKE 204


>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
           sapiens]
          Length = 631

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 10/113 (8%)

Query: 9   EWEPRWRKALRGKENKGSVEIMRKDLNDARDLHGQA---ESAAAVWKGHVMDRRKKALTD 65
           E E +  +A R ++    +E M++ L +A  L  +A   E +  + +  +++  ++ L  
Sbjct: 413 EMELKEEEAARQRQRIKELEEMQQRLQEALQLEVKARRDEESVRIAQTRLLEEEEEKLKQ 472

Query: 66  YKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSELEKKHRN 118
             +L+    EE+E +++ A++E+   + E+A   ++ RSL QA  +LE+  +N
Sbjct: 473 LMQLK----EEQERYIERAQQEKEELQQEMA---QQSRSLQQAQQQLEEVRQN 518


>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
          Length = 573

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 33/141 (23%)

Query: 3   AGPEPP-EWEPRWRKALRGKEN-------------------KGSVEIMRKDLNDA----- 37
           AGP+PP   +P     +R KE                        E M K+L D      
Sbjct: 87  AGPQPPPSQDPELLSVIRQKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTDKLEHLE 146

Query: 38  ---RDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDE 94
               +L  + E+    W+G V +      +D K+L+     ++ H L+EA++E+     E
Sbjct: 147 QEKHELRRRFENREGEWEGRVSELE----SDVKQLQDELERQQIH-LREADREKSRAVQE 201

Query: 95  LADPTERFRSLLQAVSELEKK 115
           L++  +R    L   SE+E++
Sbjct: 202 LSEQNQRLLDQLSRASEVERQ 222


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 1985 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2044

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2045 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2095


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 1989 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2048

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2049 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2099


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 1985 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2044

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2045 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2095


>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
          Length = 4515

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 1953 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2012

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2013 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2063


>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
          Length = 4684

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 2122 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2181

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2182 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2232


>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
          Length = 4525

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 9    EWEPRWRKALRGKENKG--------SVEIMRKDLNDARDLHGQAESAAAVWKGHVMDRRK 60
            E E R +K+L  +E            VE ++  + +AR L  +AE  +A       +  +
Sbjct: 1963 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 2022

Query: 61   KALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTERFRSLLQAVSE 111
            K L   +K  AF V+++E  LQ+  ++E    D+L    E  R   +   E
Sbjct: 2023 KRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQLRGEAEAARRAAEEAEE 2073


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,237,467
Number of Sequences: 37866
Number of extensions: 215316
Number of successful extensions: 1397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 269
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.