Guide to the Human Genome
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Name: CCDC64 Sequence: fasta or formatted (573aa) NCBI GI: 119120918
Description:

coiled-coil domain containing 64

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         52           5
 C cysteine            1.4          8           2
 D aspartate           5.9         34           2
 E glutamate          13.4         77           3
 F phenylalanine       1.2          7           2
 G glycine             4.0         23           2
 H histidine           2.4         14           1
 I isoleucine          2.8         16           2
 K lysine              4.5         26           2
 L leucine            14.0         80           2
 M methionine          2.6         15           2
 N asparagine          1.9         11           1
 P proline             3.3         19           3
 Q glutamine           8.0         46           2
 R arginine            8.6         49           3
 S serine              9.1         52           2
 T threonine           2.6         15           1
 V valine              4.0         23           1
 W tryptophan          0.5          3           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 64 
CCDC64B               0.213   coiled-coil domain containing 64B 
CGNL1                 0.066   cingulin-like 1 
MYO18A                0.059   myosin 18A isoform b 
MYO18A                0.059   myosin 18A isoform a 
EEA1                  0.051   early endosome antigen 1, 162kD 
CEP250                0.050   centrosomal protein 2 
MYH3                  0.050   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC88C               0.050   DVL-binding protein DAPLE 
CENPF                 0.049   centromere protein F 
MYH9                  0.048   myosin, heavy polypeptide 9, non-muscle 
MYH7B                 0.048   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CCDC41                0.047   NY-REN-58 antigen 
CCDC41                0.047   NY-REN-58 antigen 
CROCC                 0.046   ciliary rootlet coiled-coil 
CCDC18                0.046   sarcoma antigen NY-SAR-41 
MYH10                 0.046   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.046   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.045   coiled-coil domain containing 88A isoform 1 
CCDC136               0.045   coiled-coil domain containing 136 
KTN1                  0.045   kinectin 1 isoform b 
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH7                  0.045   myosin, heavy chain 7, cardiac muscle, beta 
MYH14                 0.045   myosin, heavy chain 14 isoform 1 
MYH14                 0.045   myosin, heavy chain 14 isoform 2 
MYH14                 0.045   myosin, heavy chain 14 isoform 3 
FAM184B               0.045   hypothetical protein LOC27146 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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