Guide to the Human Genome
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Name: LOC441644 Sequence: fasta or formatted (266aa) NCBI GI: 169204926
Description:

PREDICTED: similar to hCG2041217

Not currently referenced in the text

Other entries for this name:
alt mRNA {266aa} PREDICTED: similar to REST corepressor 2
alt mRNA {266aa} PREDICTED: similar to hCG2041217
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         17           1
 C cysteine            1.9          5           1
 D aspartate           4.5         12           1
 E glutamate           8.3         22           2
 F phenylalanine       2.3          6           2
 G glycine             7.5         20           2
 H histidine           2.6          7           1
 I isoleucine          3.8         10           2
 K lysine              6.4         17           2
 L leucine             7.1         19           2
 M methionine          1.9          5           1
 N asparagine          2.3          6           1
 P proline             7.1         19           3
 Q glutamine           4.5         12           2
 R arginine            6.0         16           2
 S serine              8.6         23           2
 T threonine           6.0         16           2
 V valine              7.5         20           1
 W tryptophan          2.6          7           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041217 
LOC441644             1.000   PREDICTED: similar to hCG2041217 
LOC441644             1.000   PREDICTED: similar to REST corepressor 2 
RCOR2                 0.359   REST corepressor 2 
RCOR3                 0.188   REST corepressor 3 isoform c 
RCOR3                 0.188   REST corepressor 3 isoform a 
RCOR3                 0.188   REST corepressor 3 isoform d 
RCOR3                 0.184   REST corepressor 3 isoform b 
RCOR1                 0.173   REST corepressor 1 
NCOR2                 0.036   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.036   nuclear receptor co-repressor 2 isoform 1 
MTA3                  0.027   metastasis associated 1 family, member 3 
MTA2                  0.027   metastasis-associated protein 2 
TRERF1                0.019   transcriptional regulating factor 1 
SUPT6H                0.019   suppressor of Ty 6 homolog 
NCOR1                 0.017   nuclear receptor co-repressor 1 
LOC65998              0.010   hypothetical protein LOC65998 
FAM43B                0.010   family with sequence similarity 43, member B 
MCF2                  0.010   MCF.2 cell line derived transforming sequence isofo...
MCF2                  0.010   MCF.2 cell line derived transforming sequence isofo...
C7orf41               0.010   hypothetical protein LOC222166 
DEF6                  0.010   differentially expressed in FDCP 6 homolog 
ATP13A2               0.008   ATPase type 13A2 isoform 3 
LBXCOR1               0.008   LBXCOR1 homolog 
RFTN1                 0.008   raft-linking protein 
MUC2                  0.006   mucin 2 precursor 
RERE                  0.006   atrophin-1 like protein isoform a 
RERE                  0.006   atrophin-1 like protein isoform a 
LOC100293869          0.006   PREDICTED: hypothetical protein 
LOC100291040          0.006   PREDICTED: hypothetical protein XP_002347839 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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