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Search of human proteins with 209977082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 901 0.0
gi|209977084 REST corepressor 3 isoform c [Homo sapiens] 740 0.0
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 740 0.0
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 620 e-178
gi|7661892 REST corepressor 1 [Homo sapiens] 409 e-114
gi|27734799 REST corepressor 2 [Homo sapiens] 385 e-107
gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens] 122 5e-28
gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens] 122 5e-28
gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo sapi... 122 5e-28
gi|210031154 zinc finger protein 541 [Homo sapiens] 65 9e-11
gi|14141170 metastasis-associated protein 2 [Homo sapiens] 65 2e-10
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 64 3e-10
gi|94721313 mesoderm induction early response 1, family member 3... 64 4e-10
gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens] 63 6e-10
gi|45267839 mesoderm induction early response 1, family member 2... 61 2e-09
gi|115527080 metastasis associated protein [Homo sapiens] 57 3e-08
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 54 2e-07
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 54 2e-07
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 53 6e-07
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 53 6e-07
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 51 2e-06
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 50 4e-06
gi|225735619 mesoderm induction early response 1 isoform i [Homo... 50 5e-06
gi|225735617 mesoderm induction early response 1 isoform h [Homo... 50 5e-06
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 50 5e-06
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 50 5e-06
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 50 5e-06
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 50 5e-06
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 50 5e-06
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 50 5e-06
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 901 bits (2329), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR
Sbjct: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
Query: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQAL 120
VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQAL
Sbjct: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQAL 120
Query: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS
Sbjct: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
Query: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE
Sbjct: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
Query: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL
Sbjct: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
Query: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGT 360
RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGT
Sbjct: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGT 360
Query: 361 DPTGSSDTGSITSCPIIHSNTNSPYCHSEPASTTSSSNTACCPGSSPAASSTPAAGSVHP 420
DPTGSSDTGSITSCPIIHSNTNSPYCHSEPASTTSSSNTACCPGSSPAASSTPAAGSVHP
Sbjct: 361 DPTGSSDTGSITSCPIIHSNTNSPYCHSEPASTTSSSNTACCPGSSPAASSTPAAGSVHP 420
Query: 421 APANFKSASTTSYSPC 436
APANFKSASTTSYSPC
Sbjct: 421 APANFKSASTTSYSPC 436
>gi|209977084 REST corepressor 3 isoform c [Homo sapiens]
Length = 449
Score = 740 bits (1911), Expect = 0.0
Identities = 359/364 (98%), Positives = 360/364 (98%)
Query: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR
Sbjct: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
Query: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQAL 120
VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDA+LDEYIAIAKEKHGYNVEQAL
Sbjct: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQAL 120
Query: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS
Sbjct: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
Query: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE
Sbjct: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
Query: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL
Sbjct: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
Query: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGT 360
RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQG
Sbjct: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGV 360
Query: 361 DPTG 364
G
Sbjct: 361 RKYG 364
Score = 37.0 bits (84), Expect = 0.035
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+++L Q +GK F I ++ +KT+ + ++ ++++ + ++ +
Sbjct: 348 WTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQG 407
Query: 207 NRHNQGDSDDDVEET 221
+ + GD+ EET
Sbjct: 408 TQASNGDASTLGEET 422
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 740 bits (1911), Expect = 0.0
Identities = 359/364 (98%), Positives = 360/364 (98%)
Query: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR
Sbjct: 1 MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 60
Query: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQAL 120
VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDA+LDEYIAIAKEKHGYNVEQAL
Sbjct: 61 VGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQAL 120
Query: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS
Sbjct: 121 GMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIAS 180
Query: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE
Sbjct: 181 LVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKE 240
Query: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL
Sbjct: 241 GNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTIL 300
Query: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGT 360
RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQG
Sbjct: 301 RQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGV 360
Query: 361 DPTG 364
G
Sbjct: 361 RKYG 364
Score = 38.1 bits (87), Expect = 0.016
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+++L Q +GK F I ++ +KT+ + ++ ++++ + ++ +
Sbjct: 348 WTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQG 407
Query: 207 NRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQT 249
+ + GD+ EET S +E +E T Q +T
Sbjct: 408 TQASNGDASTLGEETKSASNVPSGKSTDEE--EEAQTPQAPRT 448
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 620 bits (1600), Expect = e-178
Identities = 301/306 (98%), Positives = 302/306 (98%)
Query: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQ 118
MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDA+LDEYIAIAKEKHGYNVEQ
Sbjct: 1 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQ 60
Query: 119 ALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTI 178
ALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTI
Sbjct: 61 ALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTI 120
Query: 179 ASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAK 238
ASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAK
Sbjct: 121 ASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAK 180
Query: 239 KEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANT 298
KEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANT
Sbjct: 181 KEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANT 240
Query: 299 ILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQ 358
ILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQ
Sbjct: 241 ILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQ 300
Query: 359 GTDPTG 364
G G
Sbjct: 301 GVRKYG 306
Score = 38.1 bits (87), Expect = 0.016
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+++L Q +GK F I ++ +KT+ + ++ ++++ + ++ +
Sbjct: 290 WTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQG 349
Query: 207 NRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQT 249
+ + GD+ EET S +E +E T Q +T
Sbjct: 350 TQASNGDASTLGEETKSASNVPSGKSTDEE--EEAQTPQAPRT 390
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 409 bits (1051), Expect = e-114
Identities = 214/343 (62%), Positives = 263/343 (76%), Gaps = 16/343 (4%)
Query: 19 NGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVG-MRVGAEYQARIPEFDPG-- 75
NG KS A +G SS+N + E SG SSD+EH G MRVG +YQA +P+FDP
Sbjct: 64 NGQNKSLAAAAPNGNSSSNS---WEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
Query: 76 ATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLA 135
A + ++DN GMLVWSP ++ +A+LDEYIAIAKEKHGYN+EQALGMLFWHKHNIEKSLA
Sbjct: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
Query: 136 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRT 195
DLPNFTPFPDEWTVEDKVLFEQAFSFHGK+FHRIQQMLPDK+IASLVK+YYSWKKTR++T
Sbjct: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
Query: 196 SLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLG 255
S+MDR ARK + + +S+D++EE + + D + D KE+KKE + V K
Sbjct: 241 SVMDRHARK--QKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVK---- 294
Query: 256 RREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQ 315
+E S Q ++ R+K +PPKGM+L+QEDV AVS + AA T+LRQLDMEL+S+KRQ+Q
Sbjct: 295 -KEKHSTQAKN---RAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQ 350
Query: 316 NAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQ 358
N KQ NSALK+K++GGIE ++ PE QK NARWTTEEQLLAVQ
Sbjct: 351 NIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQ 393
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 385 bits (990), Expect = e-107
Identities = 210/376 (55%), Positives = 265/376 (70%), Gaps = 27/376 (7%)
Query: 1 MPGMMEK---GPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDV 57
MP +MEK G +L ++R+ + NGG +SE +S + HD
Sbjct: 1 MPSVMEKPSAGSGILSRSRAK---------------TVPNGGQPHSEDDSS-EEEHSHDS 44
Query: 58 GMRVGAEYQARIPEFDPGA-TKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNV 116
+RVG YQA IPE P + +Y++K+ GMLVWSP H + DA+LD+YIA+AKEKHGYN+
Sbjct: 45 MIRVGTNYQAVIPECKPESPARYSNKELKGMLVWSPNHCVSDAKLDKYIAMAKEKHGYNI 104
Query: 117 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDK 176
EQALGML WHKH++EKSLADL NFTPFPDEWTVEDKVLFEQAF FHGK F RIQQMLPDK
Sbjct: 105 EQALGMLLWHKHDVEKSLADLANFTPFPDEWTVEDKVLFEQAFGFHGKCFQRIQQMLPDK 164
Query: 177 TIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDP-KK 235
I SLVKYYYSWKKTRSRTS+MDRQAR+L R ++ DS D++EE G S+ +P
Sbjct: 165 LIPSLVKYYYSWKKTRSRTSVMDRQARRLGGRKDKEDS-DELEEGR---GGVSEGEPDPA 220
Query: 236 EAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNA 295
+ K+E +P+ ++ G G++E Q Q+RHH R++ RPPKGMYL+ E + AVS SP+
Sbjct: 221 DPKREPLPSRPL-NARPGPGKKEVQVSQYRHHPLRTRRRPPKGMYLSPEGLTAVSGSPDL 279
Query: 296 ANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLL 355
AN LR LD +LISLKRQVQ+ KQ NS+L+Q +EGGI+ +PPE+N K N+RWTT+EQLL
Sbjct: 280 ANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGIDPLRPPEANTKFNSRWTTDEQLL 339
Query: 356 AVQGTDPTGSSDTGSI 371
AVQ G D G+I
Sbjct: 340 AVQAIRRYG-KDFGAI 354
Score = 36.6 bits (83), Expect = 0.046
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 141 TPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
T F WT ++++L QA +GK F I +++ +KT+ + ++ S+++
Sbjct: 326 TKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRR 375
>gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 122 bits (307), Expect = 5e-28
Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 29/180 (16%)
Query: 59 MRVGAEYQARIPEFDPGA-TKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVE 117
+RVG YQA IPE P + +Y++K G+LVWSP H + DA+LD+YI +A EKHGYN+E
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLKGVLVWSPNHCVSDAKLDKYIVMATEKHGYNIE 61
Query: 118 QALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKT 177
Q LG+ + + L LP W IQQ LPDK
Sbjct: 62 QTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDKL 94
Query: 178 IASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDY-DPKKE 236
I+SLVKY+YSWKKT SRTS+ DRQAR+L ++ DSD+ E + + D PK+E
Sbjct: 95 ISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPKRE 154
>gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 122 bits (307), Expect = 5e-28
Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 29/180 (16%)
Query: 59 MRVGAEYQARIPEFDPGA-TKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVE 117
+RVG YQA IPE P + +Y++K G+LVWSP H + DA+LD+YI +A EKHGYN+E
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLKGVLVWSPNHCVSDAKLDKYIVMATEKHGYNIE 61
Query: 118 QALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKT 177
Q LG+ + + L LP W IQQ LPDK
Sbjct: 62 QTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDKL 94
Query: 178 IASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDY-DPKKE 236
I+SLVKY+YSWKKT SRTS+ DRQAR+L ++ DSD+ E + + D PK+E
Sbjct: 95 ISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPKRE 154
>gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo
sapiens]
Length = 266
Score = 122 bits (307), Expect = 5e-28
Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 29/180 (16%)
Query: 59 MRVGAEYQARIPEFDPGA-TKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVE 117
+RVG YQA IPE P + +Y++K G+LVWSP H + DA+LD+YI +A EKHGYN+E
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLKGVLVWSPNHCVSDAKLDKYIVMATEKHGYNIE 61
Query: 118 QALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKT 177
Q LG+ + + L LP W IQQ LPDK
Sbjct: 62 QTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDKL 94
Query: 178 IASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDY-DPKKE 236
I+SLVKY+YSWKKT SRTS+ DRQAR+L ++ DSD+ E + + D PK+E
Sbjct: 95 ISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPKRE 154
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 65.5 bits (158), Expect = 9e-11
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY-----HSIPDARLDEYIAIAKEK-- 111
+ +G+ +QA IPE + TD ++ LVW P+ S R+ E +A
Sbjct: 1074 INIGSRFQAEIPELQERSLAGTD-EHVASLVWKPWGDMMISSETQDRVTELCNVACSSVM 1132
Query: 112 --HGYNVEQALGMLFWHKHNIEKSLADLPNFTPFP--------------DEWTVEDKVLF 155
G N+E AL L + N++ +L L P D WT +K LF
Sbjct: 1133 PGGGTNLELALHCLHEAQGNVQVALETLLLRGPHKPRTHLLADYRYTGSDVWTPIEKRLF 1192
Query: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
++AF H K F+ I +M+ KT+A V+YYY WKK
Sbjct: 1193 KKAFYAHKKDFYLIHKMIQTKTVAQCVEYYYIWKK 1227
Score = 37.7 bits (86), Expect = 0.021
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 376 IIHSNTNSPYCHSEPASTTSSSNTAC-CPGSSPAASSTPAAGSVHPAPA 423
I+H T SP AS + NTAC CP SS ++S TPA H APA
Sbjct: 282 IVHQKTPSPGPAPAGASDSEGRNTACPCPASSGSSSCTPA--GPHAAPA 328
Score = 29.3 bits (64), Expect = 7.3
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 359 GTDPTGSSDT-GSITSCPIIHSNTNSPYCHSEPASTTSSSNTACCPGSSPAASST 412
G P G+SD+ G T+CP PAS+ SSS T P ++PAA T
Sbjct: 291 GPAPAGASDSEGRNTACPC-------------PASSGSSSCTPAGPHAAPAALDT 332
>gi|14141170 metastasis-associated protein 2 [Homo sapiens]
Length = 668
Score = 64.7 bits (156), Expect = 2e-10
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 59 MRVGAEYQARIPE-FDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKE------- 110
+RVG +YQA IP+ G + ++ M VW P + + D ++D+++ +A+
Sbjct: 147 IRVGCKYQAEIPDRLVEGESDNRNQQKMEMKVWDPDNPLTDRQIDQFLVVARAVGTFARA 206
Query: 111 -------------------KHGYNVEQALGMLFWHKHNIEKSLADL-PNFTPF-----PD 145
+ A+ L + +++ K+++ L P P +
Sbjct: 207 LDCSSSIRQPSLHMSAAAASRDITLFHAMDTLQRNGYDLAKAMSTLVPQGGPVLCRDEME 266
Query: 146 EWTVEDKVLFEQAFSFHGKSFHRIQQ-MLPDKTIASLVKYYYSWKKT 191
EW+ + +LFE+A +GK F+ I+Q LP K++AS+V++YY WK T
Sbjct: 267 EWSASEAMLFEEALEKYGKDFNDIRQDFLPWKSLASIVQFYYMWKTT 313
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 63.9 bits (154), Expect = 3e-10
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDARLDEYI--------AIAKE 110
+ +G +QA IPE + D LVW P+ + + L + + + A
Sbjct: 781 INIGLRFQAEIPELQDISALAQDTHKA-TLVWKPWPELENHDLQQRVENLLNLCCSSALP 839
Query: 111 KHGYNVEQALGMLFWHKHNIEKSLADLPNFTPF--------------PDEWTVEDKVLFE 156
G N E AL LF K ++ +L L P D+WT ++ LF
Sbjct: 840 GGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFN 899
Query: 157 QAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDD 216
+A + + K F +Q+M+ KT+A V+YYY+WKK L + +LA + + +
Sbjct: 900 KALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKI---MRLGRKHRTRLAEIIDDCVTSE 956
Query: 217 DVEETHPMDGNDSDYDPKKEAKKEGNTEQP 246
+ EE + D + D +++ KE +E P
Sbjct: 957 EEEELEEEEEEDPEED--RKSTKEEESEVP 984
>gi|94721313 mesoderm induction early response 1, family member 3
[Homo sapiens]
Length = 549
Score = 63.5 bits (153), Expect = 4e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 44 EPESGCSSDDEHDVGMRVGAEYQARIP----EFDPGATKYTDKDNGGMLVWSPYHSIPDA 99
E +SG S +D M +G +YQA IP E+D Y ++D L+W P + ++
Sbjct: 162 ETDSGNSPEDLRKEIM-IGLQYQAEIPPYLGEYDGNEKVYENEDQ---LLWCP-DVVLES 216
Query: 100 RLDEYIA--------------IAKEKHGYNVEQALGMLFWHKHNIEKSLADL---PNFTP 142
++ EY+ I+ H + EQAL L HNI++++ +
Sbjct: 217 KVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKASQ 276
Query: 143 FPDEWTVEDKVLFEQAFSFHGKSFHRIQQ-MLPDKTIASLVKYYYSWKKTRSRTSLMDRQ 201
WT E+ FE A GK FH IQ+ + +T+A V +YY WKK+ R +Q
Sbjct: 277 GMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKS-ERYDYFAQQ 335
Query: 202 ARKLANRHNQGDSDDD-----VEETHPMDG 226
R R+N D V+ET + G
Sbjct: 336 TRFGKKRYNHHPGVTDYMDRLVDETEALGG 365
>gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens]
Length = 515
Score = 62.8 bits (151), Expect = 6e-10
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 34/167 (20%)
Query: 59 MRVGAEYQARIPEFD-PGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGY--- 114
+RVG YQA IPE G + ++ + VW P + D ++D+++ +A+ +
Sbjct: 150 IRVGPRYQADIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARA 209
Query: 115 -----NVEQ------------------ALGMLFWHKHNIEKSLADL-PNFTPF-----PD 145
+V Q A+ L+ H +++ +++ L P P +
Sbjct: 210 LDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEME 269
Query: 146 EWTVEDKVLFEQAFSFHGKSFHRIQQ-MLPDKTIASLVKYYYSWKKT 191
EW+ + LFE+A +GK F+ I+Q LP K++ S+++YYY WK T
Sbjct: 270 EWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTT 316
>gi|45267839 mesoderm induction early response 1, family member 2
[Homo sapiens]
Length = 545
Score = 61.2 bits (147), Expect = 2e-09
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 32/214 (14%)
Query: 44 EPESGCSSDDEHDV--------GMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHS 95
EP S SSD E D + VG ++QA + +N L+W P
Sbjct: 174 EPGSSASSDTEEDSLPANKCKKEIMVGPQFQADLSNLHLNRHCEKIYENEDQLLWDP-SV 232
Query: 96 IPDARLDEYIAIAKEKHGYNV--------------EQALGMLFWHKHNIEKSLADLP-NF 140
+P+ ++E++ A ++ + + EQAL L N+E++L L N
Sbjct: 233 LPEREVEEFLYRAVKRRWHEMAGPQLPEGEAVKDSEQALYELVKCNFNVEEALRRLRFNV 292
Query: 141 TPFPD---EWTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTS 196
D W+ E+ FE F HGK+FH IQ + +++ V+YYY WKK+ R
Sbjct: 293 KVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKS-ERYD 351
Query: 197 LMDRQARKLANRHNQGDSDDDVEETHPMDGNDSD 230
+Q R L R D ++ +DG+D D
Sbjct: 352 YFAQQTR-LGRRKYVPSGTTDADQ--DLDGSDPD 382
>gi|115527080 metastasis associated protein [Homo sapiens]
Length = 715
Score = 57.4 bits (137), Expect = 3e-08
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 34/167 (20%)
Query: 59 MRVGAEYQARIPEF-DPGATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGY--- 114
+RVG YQA I + G D+ VW ++ + D ++D+++ +A+ +
Sbjct: 167 IRVGNRYQADITDLLKEGEEDGRDQSRLETQVWEAHNPLTDKQIDQFLVVARSVGTFARA 226
Query: 115 -----NVEQ------------------ALGMLFWHKHNIEKSLADL-PNFTPF-----PD 145
+V Q A+ L + ++I K+++ L P P +
Sbjct: 227 LDCSSSVRQPSLHMSAAAASRDITLFHAMDTLHKNIYDISKAISALVPQGGPVLCRDEME 286
Query: 146 EWTVEDKVLFEQAFSFHGKSFHRIQQ-MLPDKTIASLVKYYYSWKKT 191
EW+ + LFE+A +GK F IQQ LP K++ S+++YYY WK T
Sbjct: 287 EWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTT 333
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQAR--- 203
W+ ++K F + F H K+F I L KT+A V YYY KK + SL+ R R
Sbjct: 432 WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRRRG 491
Query: 204 KLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQ 245
K + Q ++ PM + + +KE +KE E+
Sbjct: 492 KSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEE 533
Score = 37.7 bits (86), Expect = 0.021
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 36/143 (25%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+ ++ HG+++ I +M+ KT++ +Y+++KK ++ ++ + K+
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKME 674
Query: 207 NRHN--------------------------------QGDSDDDVEETHPMDGNDSDYD-- 232
N G+ ++ VEE N SD +
Sbjct: 675 KERNARRKKKKAPAAASEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEATVNNSSDTESI 734
Query: 233 --PKKEAKKEGNTEQPVQTSKIG 253
P EA K+ P + +G
Sbjct: 735 PSPHTEAAKDTGQNGPKPPATLG 757
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQAR--- 203
W+ ++K F + F H K+F I L KT+A V YYY KK + SL+ R R
Sbjct: 432 WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRRRG 491
Query: 204 KLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQ 245
K + Q ++ PM + + +KE +KE E+
Sbjct: 492 KSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEE 533
Score = 37.7 bits (86), Expect = 0.021
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+ ++ HG+++ I +M+ KT++ +Y+++KK ++ ++ + K+
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKME 674
Query: 207 NRHNQGDS------------------DDDVEETHPMDGNDSDYDPKKEAKKEGNTEQP 246
N +D+ E + GN+ + + EA E P
Sbjct: 675 KERNARRKKKKAPAAASEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEALHASGNEVP 732
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 52.8 bits (125), Expect = 6e-07
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAR-----LDEYIAIAKEK-- 111
+ VG+ +QA IP A D LVW P+ + +R +++ + A
Sbjct: 723 INVGSRFQAEIPLMRDRALAAADPHKAD-LVWQPWEDLESSREKQRQVEDLLTAACSSIF 781
Query: 112 --HGYNVEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKVLF 155
G N E AL L + +I ++L L P+ P D+W + ++ LF
Sbjct: 782 PGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLF 841
Query: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
+ + + K F +Q+++ KT+A V++YY++KK
Sbjct: 842 NKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 52.8 bits (125), Expect = 6e-07
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAR-----LDEYIAIAKEK-- 111
+ VG+ +QA IP A D LVW P+ + +R +++ + A
Sbjct: 723 INVGSRFQAEIPLMRDRALAAADPHKAD-LVWQPWEDLESSREKQRQVEDLLTAACSSIF 781
Query: 112 --HGYNVEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKVLF 155
G N E AL L + +I ++L L P+ P D+W + ++ LF
Sbjct: 782 PGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLF 841
Query: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
+ + + K F +Q+++ KT+A V++YY++KK
Sbjct: 842 NKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 50.8 bits (120), Expect = 2e-06
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 15/218 (6%)
Query: 143 FPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQA 202
F + WT +K +F+ F H K+F I L K++ V YYY KK + +L+ R
Sbjct: 436 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNY 495
Query: 203 RKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSL 262
K R+ Q E+ + + ++ KKE +K+ E+
Sbjct: 496 GKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEK--------------DEK 541
Query: 263 QHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNS 322
+ + + K + T+E A AN+ R+ S+ + A +
Sbjct: 542 EDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRITRSMTNEAAAASAAAA 601
Query: 323 ALKQKMEGGIEEFKPPESNQKI-NARWTTEEQLLAVQG 359
A ++ + P S + + +RWT EE +A +G
Sbjct: 602 AATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVAKKG 639
Score = 38.9 bits (89), Expect = 0.009
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 147 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLA 206
WT E+ + ++ HG+++ I +M+ K+ A +Y+++K+ + +L+ + +K +
Sbjct: 628 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTS 687
Query: 207 NRHNQ---------------GDSDDDV----EETHPMDGNDSDYDPKKE----AKKEGNT 243
+ + D+D+ EE +P D P ++ A GNT
Sbjct: 688 RKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEVEAVKPSEDSPENATSRGNT 747
Query: 244 EQPVQ 248
E V+
Sbjct: 748 EPAVE 752
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 50.1 bits (118), Expect = 4e-06
Identities = 68/286 (23%), Positives = 109/286 (38%), Gaps = 40/286 (13%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 183 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 238
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 239 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 298
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 299 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 357
Query: 200 RQARKLANRHNQGDSDDDVEETHP--MDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRR 257
+Q R ++N HP D D D + A P S +
Sbjct: 358 QQTRFGKKKYN----------LHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQS 407
Query: 258 EYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQL 303
E + +Q G L +E+V N IL+ L
Sbjct: 408 EKEDGTVSTANQNGVSSNGPGEILNKEEVKVEGLHINGPTGILQML 453
>gi|225735619 mesoderm induction early response 1 isoform i [Homo
sapiens]
Length = 370
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 103 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 158
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 159 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 218
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 219 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 277
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 278 QQTRFGKKKYN 288
>gi|225735617 mesoderm induction early response 1 isoform h [Homo
sapiens]
Length = 485
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 139 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 194
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 195 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 254
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 255 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 313
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 314 QQTRFGKKKYN 324
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 183 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 238
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 239 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 298
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 299 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 357
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 358 QQTRFGKKKYN 368
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 166 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 221
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 222 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 281
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 282 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 340
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 341 QQTRFGKKKYN 351
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 219 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 274
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 275 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 334
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 335 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 393
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 394 QQTRFGKKKYN 404
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 183 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 238
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 239 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 298
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 299 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 357
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 358 QQTRFGKKKYN 368
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 166 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 221
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 222 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 281
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 282 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 340
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 341 QQTRFGKKKYN 351
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 49.7 bits (117), Expect = 5e-06
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 43 SEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKD----NGGMLVWSPYHSIPD 98
SE + ++ + VG+ +QA IP G +Y + + N L+W P + +P+
Sbjct: 219 SEEDEDYIPSEDWKKEIMVGSMFQAEIPV---GICRYKENEKVYENDDQLLWDPEY-LPE 274
Query: 99 ARLDEYI--------------AIAKEKHGYNVEQALGMLFWHKHNIEKSLADLP-NFTPF 143
++ ++ AI + H + EQAL L + E++L L N
Sbjct: 275 DKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAA 334
Query: 144 PDE---WTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWKKTRSRTSLMD 199
+E WT E+ FEQ +GK FH IQ + +++ V +YY WKK+ R
Sbjct: 335 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKS-ERYDFFA 393
Query: 200 RQARKLANRHN 210
+Q R ++N
Sbjct: 394 QQTRFGKKKYN 404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,953,177
Number of Sequences: 37866
Number of extensions: 933282
Number of successful extensions: 6829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 5804
Number of HSP's gapped (non-prelim): 1009
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.