Guide to the Human Genome
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Name: LOC391556 Sequence: fasta or formatted (103aa) NCBI GI: 169165527
Description:

PREDICTED: similar to hCG1643855

Not currently referenced in the text

Other entries for this name:
alt mRNA {103aa} PREDICTED: hypothetical protein LOC391556
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          7           2
 C cysteine            1.0          1           1
 D aspartate           6.8          7           2
 E glutamate           8.7          9           2
 F phenylalanine       2.9          3           1
 G glycine             4.9          5           2
 H histidine           4.9          5           1
 I isoleucine          1.9          2           1
 K lysine              6.8          7           2
 L leucine             7.8          8           1
 M methionine          1.9          2           1
 N asparagine          5.8          6           2
 P proline             5.8          6           1
 Q glutamine           4.9          5           1
 R arginine            1.9          2           1
 S serine              7.8          8           2
 T threonine           6.8          7           1
 V valine              6.8          7           1
 W tryptophan          2.9          3           1
 Y tyrosine            2.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1643855 
LOC391556             1.000   PREDICTED: hypothetical protein LOC391556 
RBBP4                 0.768   retinoblastoma binding protein 4 isoform a 
RBBP4                 0.732   retinoblastoma binding protein 4 isoform b 
RBBP7                 0.619   retinoblastoma binding protein 7 
RBBP4                 0.490   retinoblastoma binding protein 4 isoform c 
PWWP2A                0.010   PWWP domain containing 2A isoform b 
PWWP2A                0.010   PWWP domain containing 2A isoform a 
PFAS                  0.010   phosphoribosylformylglycinamidine synthase 
MADCAM1               0.005   mucosal vascular addressin cell adhesion molecule 1...
ENSA                  0.005   endosulfine alpha isoform 5 
ENSA                  0.005   endosulfine alpha isoform 2 
ENSA                  0.005   endosulfine alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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