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Search of human proteins with 205360977
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|205360977 LAG1 homolog, ceramide synthase 4 [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|205360977 LAG1 homolog, ceramide synthase 4 [Homo sapiens] 816 0.0
gi|32455256 LAG1 longevity assurance 2 [Homo sapiens] 384 e-106
gi|31077094 LAG1 longevity assurance 2 [Homo sapiens] 384 e-106
gi|116235446 LAG1 longevity assurance homolog 3 [Homo sapiens] 345 4e-95
gi|22218345 LAG1 homolog, ceramide synthase 5 [Homo sapiens] 327 1e-89
gi|45007002 longevity assurance homolog 6 [Homo sapiens] 319 2e-87
gi|11641421 LAG1 homolog, ceramide synthase 1 isoform 1 [Homo sa... 110 2e-24
gi|38176296 LAG1 homolog, ceramide synthase 1 isoform 2 [Homo sa... 108 6e-24
gi|6912450 translocation-associated membrane protein 2 [Homo sap... 62 9e-10
gi|7657655 translocation associated membrane protein 1 [Homo sap... 56 5e-08
gi|145580602 translocation associated membrane protein 1-like 1 ... 55 8e-08
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.090
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 35 0.090
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.090
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 35 0.090
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 35 0.090
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 35 0.090
gi|224282187 HOP homeobox isoform a [Homo sapiens] 35 0.15
gi|224451023 HOP homeobox isoform b [Homo sapiens] 35 0.15
gi|21264589 HOP homeobox isoform b [Homo sapiens] 35 0.15
gi|21264587 HOP homeobox isoform b [Homo sapiens] 35 0.15
gi|219275578 SIX homeobox 2 [Homo sapiens] 32 0.76
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 32 0.76
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 32 1.3
gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens] 32 1.3
gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens] 32 1.3
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi... 32 1.3
gi|5174681 SIX homeobox 1 [Homo sapiens] 31 2.2
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 31 2.2
gi|18860857 menin isoform 1 [Homo sapiens] 30 2.9
>gi|205360977 LAG1 homolog, ceramide synthase 4 [Homo sapiens]
Length = 394
Score = 816 bits (2109), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI 60
MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI
Sbjct: 1 MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI 60
Query: 61 GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR
Sbjct: 61 GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
Query: 121 RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY 180
RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY
Sbjct: 121 RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY 180
Query: 181 WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD
Sbjct: 181 WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
Query: 241 SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF 300
SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF
Sbjct: 241 SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF 300
Query: 301 GYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL 360
GYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL
Sbjct: 301 GYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL 360
Query: 361 QLKNGAAGGPRPAPTDGPRSRVAGRLTNRHTTAT 394
QLKNGAAGGPRPAPTDGPRSRVAGRLTNRHTTAT
Sbjct: 361 QLKNGAAGGPRPAPTDGPRSRVAGRLTNRHTTAT 394
>gi|32455256 LAG1 longevity assurance 2 [Homo sapiens]
Length = 380
Score = 384 bits (985), Expect = e-106
Identities = 184/374 (49%), Positives = 255/374 (68%), Gaps = 10/374 (2%)
Query: 1 MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI 60
ML + ++FW +R WLP N+TW +LEDRDGRVY DL LPLAL+ L +R FE ++
Sbjct: 1 MLQTLYDYFWWERLWLPVNLTWADLEDRDGRVYAKASDLYITLPLALLFLIVRYFFELYV 60
Query: 61 GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
PL+ L ++++TR + PNATLE +LT G +PK+ ++ LL+ Q GL+ +Q +RWFRR
Sbjct: 61 ATPLAALLNIKEKTRLRAPPNATLEHFYLTSGKQPKQVEVELLSRQSGLSGRQVERWFRR 120
Query: 121 RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY 180
RRNQDRP L KKF EASWRF FYL +F+ G++V+ + W + W+ YP Q+ PS Y
Sbjct: 121 RRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDMKKVWEGYPIQSTIPSQY 180
Query: 181 WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
W+Y++EL FY SLL + DVKRKDFKEQ+IHH +IL++FS+ AN +R G+L++ LHD
Sbjct: 181 WYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHD 240
Query: 241 SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF 300
SSDYLLE+ KM NY ++ C+ +F++F+ VF TRLV+ P IL+ T + FF
Sbjct: 241 SSDYLLESAKMFNYAGWKNTCNNIFIVFAIVFIITRLVILPFWILHCTLVYPLELYPAFF 300
Query: 301 GYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL 360
GYYFFN ++ +LQLLH+FW+ LILRM + F+ G++ +D RSD EE++SSE AA
Sbjct: 301 GYYFFNSMMGVLQLLHIFWAYLILRMAHKFI-TGKLVEDERSDREETESSEGEEAA---- 355
Query: 361 QLKNGAAGGPRPAP 374
A GG + P
Sbjct: 356 -----AGGGAKSRP 364
>gi|31077094 LAG1 longevity assurance 2 [Homo sapiens]
Length = 380
Score = 384 bits (985), Expect = e-106
Identities = 184/374 (49%), Positives = 255/374 (68%), Gaps = 10/374 (2%)
Query: 1 MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI 60
ML + ++FW +R WLP N+TW +LEDRDGRVY DL LPLAL+ L +R FE ++
Sbjct: 1 MLQTLYDYFWWERLWLPVNLTWADLEDRDGRVYAKASDLYITLPLALLFLIVRYFFELYV 60
Query: 61 GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
PL+ L ++++TR + PNATLE +LT G +PK+ ++ LL+ Q GL+ +Q +RWFRR
Sbjct: 61 ATPLAALLNIKEKTRLRAPPNATLEHFYLTSGKQPKQVEVELLSRQSGLSGRQVERWFRR 120
Query: 121 RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY 180
RRNQDRP L KKF EASWRF FYL +F+ G++V+ + W + W+ YP Q+ PS Y
Sbjct: 121 RRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDMKKVWEGYPIQSTIPSQY 180
Query: 181 WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
W+Y++EL FY SLL + DVKRKDFKEQ+IHH +IL++FS+ AN +R G+L++ LHD
Sbjct: 181 WYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHD 240
Query: 241 SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF 300
SSDYLLE+ KM NY ++ C+ +F++F+ VF TRLV+ P IL+ T + FF
Sbjct: 241 SSDYLLESAKMFNYAGWKNTCNNIFIVFAIVFIITRLVILPFWILHCTLVYPLELYPAFF 300
Query: 301 GYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL 360
GYYFFN ++ +LQLLH+FW+ LILRM + F+ G++ +D RSD EE++SSE AA
Sbjct: 301 GYYFFNSMMGVLQLLHIFWAYLILRMAHKFI-TGKLVEDERSDREETESSEGEEAA---- 355
Query: 361 QLKNGAAGGPRPAP 374
A GG + P
Sbjct: 356 -----AGGGAKSRP 364
>gi|116235446 LAG1 longevity assurance homolog 3 [Homo sapiens]
Length = 383
Score = 345 bits (885), Expect = 4e-95
Identities = 175/372 (47%), Positives = 235/372 (63%), Gaps = 11/372 (2%)
Query: 1 MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFI 60
M +F EWFW +RFWLPP + W++LED DG V+ P L +P A +LL +R FE+F+
Sbjct: 1 MFWTFKEWFWLERFWLPPTIKWSDLEDHDGLVFVKPSHLYVTIPYAFLLLIIRRVFEKFV 60
Query: 61 GLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
PL++ G+++ T R+V PN LE F +P + + LA +C LT +Q +RWFR
Sbjct: 61 ASPLAKSFGIKE-TVRKVTPNTVLENFFKHSTRQPLQTDIYGLAKKCNLTERQVERWFRS 119
Query: 121 RRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLY 180
RRNQ+RP KKF EA WRF FYL V G++ LY + WL+ W+ YP Q L PS Y
Sbjct: 120 RRNQERPSRLKKFQEACWRFAFYLMITVAGIAFLYDKPWLYDLWEVWNGYPKQPLLPSQY 179
Query: 181 WWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
W+Y+LE+ FY SLL RL FDVKRKDF +IHH A+ LM+FS+ AN +R G+LV+++HD
Sbjct: 180 WYYILEMSFYWSLLFRLGFDVKRKDFLAHIIHHLAAISLMSFSWCANYIRSGTLVMIVHD 239
Query: 241 SSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFF 300
+D LE+ KM +Y + Q C+ LF IFS +FF +RL++FP ILY T + + PFF
Sbjct: 240 VADIWLESAKMFSYAGWTQTCNTLFFIFSTIFFISRLIVFPFWILYCTLILPMYHLEPFF 299
Query: 301 GYYFFNGLLMLLQLLHVFWSCLILRMLYS--FMKKGQMEKDIRSD-----VEESDSSEEA 353
Y F N LM+LQ+LH++W IL+ML FMK Q D+RSD EE + EEA
Sbjct: 300 SYIFLNLQLMILQVLHLYWGYYILKMLNRCIFMKSIQ---DVRSDDEDYEEEEEEEEEEA 356
Query: 354 AAAQEPLQLKNG 365
+E LKNG
Sbjct: 357 TKGKEMDCLKNG 368
>gi|22218345 LAG1 homolog, ceramide synthase 5 [Homo sapiens]
Length = 392
Score = 327 bits (838), Expect = 1e-89
Identities = 159/346 (45%), Positives = 217/346 (62%), Gaps = 1/346 (0%)
Query: 8 WFWQDRFWLPPNVTWTELED-RDGRVYPHPQDLLAALPLALVLLAMRLAFERFIGLPLSR 66
W W +RFWLP NV+W +LE DG YP + +L+ PLA + +RL FERFI P +
Sbjct: 15 WLWSERFWLPENVSWADLEGPADGYGYPRGRHILSVFPLAAGIFFVRLLFERFIAKPCAL 74
Query: 67 WLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRRRNQDR 126
+G+ D Q +PNA LEK F++ P + +L L+ Q +++ Q WFR RRNQD+
Sbjct: 75 CIGIEDSGPYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDK 134
Query: 127 PQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYWWYLLE 186
P KFCE+ WRF FYL F G+ L+ W W CW YP Q L LY +Y++E
Sbjct: 135 PPTLTKFCESMWRFTFYLCIFCYGIRFLWSSPWFWDIRQCWHNYPFQPLSSGLYHYYIME 194
Query: 187 LGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLL 246
L FY SL+ D+KRKDF +HH V + L++FSY N++R+G+L++ LHD SD+LL
Sbjct: 195 LAFYWSLMFSQFTDIKRKDFLIMFVHHLVTIGLISFSYINNMVRVGTLIMCLHDVSDFLL 254
Query: 247 EACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFFGYYFFN 306
EA K+ NY +YQ++CD LF+IFS VF TRL ++P IL TT +ES GP+ ++ N
Sbjct: 255 EAAKLANYAKYQRLCDTLFVIFSAVFMVTRLGIYPFWILNTTLFESWEIIGPYASWWLLN 314
Query: 307 GLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEE 352
GLL+ LQLLHV WS LI R+ + +G++ KD RSDVE S E+
Sbjct: 315 GLLLTLQLLHVIWSYLIARIALKALIRGKVSKDDRSDVESSSEEED 360
>gi|45007002 longevity assurance homolog 6 [Homo sapiens]
Length = 384
Score = 319 bits (818), Expect = 2e-87
Identities = 154/346 (44%), Positives = 218/346 (63%)
Query: 8 WFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALPLALVLLAMRLAFERFIGLPLSRW 67
WFW +RFWLP NVTW +L++ + +P +DL A PLA + +RL FERF+ P +
Sbjct: 7 WFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIA 66
Query: 68 LGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRRRNQDRP 127
L ++ + PNA LEK F P E +L L+ Q ++ QRWFR+RRNQ++P
Sbjct: 67 LNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 126
Query: 128 QLTKKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYWWYLLEL 187
+FCE+ WRF FYL F G+ L WLW CW YP Q L L+++Y+LEL
Sbjct: 127 STLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILEL 186
Query: 188 GFYLSLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLLE 247
FY SL+ D+KRKDF +HH V++ L+TFSY N+ R+G+LVL LHDS+D LLE
Sbjct: 187 SFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLE 246
Query: 248 ACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFFGYYFFNG 307
A KM NY ++Q++CD LF++F+ VF TRL +FP +L TT +ES GP+ ++ FN
Sbjct: 247 AAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNL 306
Query: 308 LLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEA 353
LL+L+Q L+ FWS LI+++ + +G++ KD RSD+E S E++
Sbjct: 307 LLLLVQGLNCFWSYLIVKIACKAVSRGKVSKDDRSDIESSSDEEDS 352
>gi|11641421 LAG1 homolog, ceramide synthase 1 isoform 1 [Homo
sapiens]
Length = 350
Score = 110 bits (276), Expect = 2e-24
Identities = 92/299 (30%), Positives = 141/299 (47%), Gaps = 22/299 (7%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQC----GLTLQQTQRWFR--RRRNQDRPQLTKKFCEAS 137
L + L E P+L LLA L T R FR +R +P+ K E++
Sbjct: 44 LARRGLAEHAHLAPPELLLLALGALGWTALRSAATARLFRPLAKRCCLQPRDAAKMPESA 103
Query: 138 WRFLFYLSSFVGGLSVLYHESWLW---APVMCWDRYPNQTLKPSLYWWYLLELGFY-LSL 193
W+FLFYL S+ +L+ + + P + +D P + + YLL+ FY S+
Sbjct: 104 WKFLFYLGSWSYSAYLLFGTDYPFFHDPPSVFYDWTPGMAVPRDIAAAYLLQGSFYGHSI 163
Query: 194 LIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLLEACKMVN 253
L D RKD ++HH V +IL+ SY+ +G LVL LHD SD LE K+
Sbjct: 164 YATLYMDTWRKDSVVMLLHHVVTLILIVSSYAFRYHNVGILVLFLHDISDVQLEFTKLNI 223
Query: 254 YMQ---------YQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFFGYYF 304
Y + + D L F F +F+ RL FP ++LY T + S+ Y+F
Sbjct: 224 YFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVLYATSHCSLRTVPDIPFYFF 283
Query: 305 FNGLLMLLQLLHVFWSCLILRMLYSFMKKGQME--KDIRSDVEESDSSEEAAAAQEPLQ 361
FN LL+LL L++++W I+ + GQ+ KD+R S + + A++PL+
Sbjct: 284 FNALLLLLTLMNLYWFLYIVAFAAKVL-TGQVHELKDLREYDTAEAQSLKPSKAEKPLR 341
>gi|38176296 LAG1 homolog, ceramide synthase 1 isoform 2 [Homo
sapiens]
Length = 337
Score = 108 bits (271), Expect = 6e-24
Identities = 92/294 (31%), Positives = 139/294 (47%), Gaps = 23/294 (7%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQC----GLTLQQTQRWFR--RRRNQDRPQLTKKFCEAS 137
L + L E P+L LLA L T R FR +R +P+ K E++
Sbjct: 44 LARRGLAEHAHLAPPELLLLALGALGWTALRSAATARLFRPLAKRCCLQPRDAAKMPESA 103
Query: 138 WRFLFYLSSFVGGLSVLYHESWLW---APVMCWDRYPNQTLKPSLYWWYLLELGFY-LSL 193
W+FLFYL S+ +L+ + + P + +D P + + YLL+ FY S+
Sbjct: 104 WKFLFYLGSWSYSAYLLFGTDYPFFHDPPSVFYDWTPGMAVPRDIAAAYLLQGSFYGHSI 163
Query: 194 LIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLLEACKMVN 253
L D RKD ++HH V +IL+ SY+ +G LVL LHD SD LE K+
Sbjct: 164 YATLYMDTWRKDSVVMLLHHVVTLILIVSSYAFRYHNVGILVLFLHDISDVQLEFTKLNI 223
Query: 254 YMQ---------YQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISNRGPFFGYYF 304
Y + + D L F F +F+ RL FP ++LY T + S+ Y+F
Sbjct: 224 YFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVLYATSHCSLRTVPDIPFYFF 283
Query: 305 FNGLLMLLQLLHVFWSCLILRMLYSFMKKGQME--KDIRS-DVEESDSSEEAAA 355
FN LL+LL L++++W I+ + GQ+ KD+R D E+ S + + A
Sbjct: 284 FNALLLLLTLMNLYWFLYIVAFAAKVL-TGQVHELKDLREYDTAEAQSLKPSKA 336
>gi|6912450 translocation-associated membrane protein 2 [Homo
sapiens]
Length = 370
Score = 62.0 bits (149), Expect = 9e-10
Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 132 KFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYWWYLLELGFYL 191
KF E+ +F+ +S + V+ E +L P W+ YP+ L + ++YL +L ++L
Sbjct: 113 KFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLCQLAYWL 172
Query: 192 SLLIRLPFD-VKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLLEACK 250
L L F V++++ Q+ + + ++ + +Y NL R+G ++LLL S+++L +
Sbjct: 173 HALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEFLFHTAR 232
Query: 251 MVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQIL 285
+ + + LF ++ VF TRL + +L
Sbjct: 233 LFYFADENN--EKLFSAWAAVFGVTRLFILTLAVL 265
>gi|7657655 translocation associated membrane protein 1 [Homo
sapiens]
Length = 374
Score = 56.2 bits (134), Expect = 5e-08
Identities = 37/157 (23%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 132 KFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYWWYLLELGFYL 191
KF E+ FYL + V G +L E+++ P + W YP+ + + ++Y+ +L ++L
Sbjct: 118 KFNESGQLSAFYLFACVWGTFILISENYISDPTILWRAYPHNLMTFQMKFFYISQLAYWL 177
Query: 192 SLLIRLPFD-VKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHDSSDYLLEACK 250
L F K++D Q+++ + + + +Y NL +G ++L+LH ++L +
Sbjct: 178 HAFPELYFQKTKKEDIPRQLVYIGLYLFHIAGAYLLNLNHLGLVLLVLHYFVEFLFHISR 237
Query: 251 MVNYM--QYQQVCDALFLIFSFVFFYTRLVLFPTQIL 285
+ + +YQ+ F +++ +F RL+ +L
Sbjct: 238 LFYFSNEKYQKG----FSLWAVLFVLGRLLTLILSVL 270
>gi|145580602 translocation associated membrane protein 1-like 1
[Homo sapiens]
Length = 369
Score = 55.5 bits (132), Expect = 8e-08
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 126 RPQLTK----KFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYW 181
R Q TK KF E+ +FY S + G +L E+ L P + W P+ + + +
Sbjct: 108 RMQFTKAKQNKFNESGQFSVFYFFSCIWGTFILISENCLSDPTLIWKARPHSMMTFQMKF 167
Query: 182 WYLLELGFYLSLLIRLPFD-VKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLLLHD 240
+Y+ +L ++ L F K++D Q+++ + + +T +Y L +G L+L+LH
Sbjct: 168 FYISQLAYWFHAFPELYFQKTKKQDIPRQLVYIGLHLFHITGAYLLYLNHLGLLLLVLHY 227
Query: 241 SSDYLLEACKMVNYM--QYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESIS-NRG 297
+ L C + + +YQ+ +++ VF RLV +L ++ + S NR
Sbjct: 228 FVELLSHMCGLFYFSDEKYQKGIS----LWAIVFILGRLVTLIVSVLTVGFHLAGSQNRN 283
Query: 298 P 298
P
Sbjct: 284 P 284
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 392 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 445
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 327 GKREEDSQSSSEESDSEEEAPAQAKP 352
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 254 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 313
Query: 383 AGR 385
G+
Sbjct: 314 PGK 316
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 469 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 522
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKP 429
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 331 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
Query: 383 AGR 385
G+
Sbjct: 391 PGK 393
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 469 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 522
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKP 429
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 331 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
Query: 383 AGR 385
G+
Sbjct: 391 PGK 393
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 392 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 445
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 327 GKREEDSQSSSEESDSEEEAPAQAKP 352
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 254 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 313
Query: 383 AGR 385
G+
Sbjct: 314 PGK 316
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 469 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 522
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKP 429
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 331 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
Query: 383 AGR 385
G+
Sbjct: 391 PGK 393
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEPLQLKN-GAAGGPRPAPT--DGPRSRVAG 384
G+ E+D RS EESDS EA AA Q+K G + +PA T GP + AG
Sbjct: 469 GKQEEDSRSSSEESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAG 522
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 334 GQMEKDIRSDVEESDSSEEAAAAQEP 359
G+ E+D +S EESDS EEA A +P
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKP 429
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 KKGQMEKDIRSDVEES-DSSEEAAAAQEPLQLKN-------GAAGGP-RPAPTDGPRSRV 382
K G+ E+D S EES DS EE AA+ LQ K GAA P + +P G
Sbjct: 331 KAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
Query: 383 AGR 385
G+
Sbjct: 391 PGK 393
>gi|224282187 HOP homeobox isoform a [Homo sapiens]
Length = 91
Score = 34.7 bits (78), Expect = 0.15
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LE +F P L L+AA+ GL+ ++TQ+WF++R
Sbjct: 35 LEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQR 72
>gi|224451023 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 34.7 bits (78), Expect = 0.15
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LE +F P L L+AA+ GL+ ++TQ+WF++R
Sbjct: 17 LEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQR 54
>gi|21264589 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 34.7 bits (78), Expect = 0.15
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LE +F P L L+AA+ GL+ ++TQ+WF++R
Sbjct: 17 LEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQR 54
>gi|21264587 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 34.7 bits (78), Expect = 0.15
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 84 LEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LE +F P L L+AA+ GL+ ++TQ+WF++R
Sbjct: 17 LEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQR 54
>gi|219275578 SIX homeobox 2 [Homo sapiens]
Length = 291
Score = 32.3 bits (72), Expect = 0.76
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 62 LPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LP S W G + K + L + + + P + LA GLT Q WF+ R
Sbjct: 117 LPRSIWDGEETSYCFKEKSRSVLREWYAHNPY-PSPREKRELAEATGLTTTQVSNWFKNR 175
Query: 122 RNQDRPQLTKK 132
R +DR K+
Sbjct: 176 RQRDRAAEAKE 186
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 32.3 bits (72), Expect = 0.76
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 323 ILRMLYSFMKKGQMEKDI---RSDVEESDSSEEAAAAQEPLQLKNGAAGGPRPAPTDGPR 379
+LR+ +F K + S + SDS++ AAA + LQ A+GGP+P +
Sbjct: 204 LLRLPAAFRKAASQNSSLWAQLSSTQTSDSTDAAAAKTQFLQNMQTASGGPQPRLSAVEV 263
Query: 380 SRVAGRL 386
AGRL
Sbjct: 264 EAEAGRL 270
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 31.6 bits (70), Expect = 1.3
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 62 LPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LP + W G + + + + L + +L + + P + LA GLT Q WF+ R
Sbjct: 199 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPY-PNPSKKRELAQATGLTPTQVGNWFKNR 257
Query: 122 RNQDRPQLTK 131
R +DR K
Sbjct: 258 RQRDRAAAAK 267
>gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens]
Length = 430
Score = 31.6 bits (70), Expect = 1.3
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 65 SRWLGVRDQTRRQVKPNAT--LEKHFLTE--GHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
SR+L R + RR AT L ++F + P E LA +CG+T+ Q WF
Sbjct: 228 SRFLDAR-RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 286
Query: 121 RRNQDRPQLTK 131
+R + + + K
Sbjct: 287 KRIRYKKNIGK 297
>gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens]
Length = 430
Score = 31.6 bits (70), Expect = 1.3
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 65 SRWLGVRDQTRRQVKPNAT--LEKHFLTE--GHRPKEPQLSLLAAQCGLTLQQTQRWFRR 120
SR+L R + RR AT L ++F + P E LA +CG+T+ Q WF
Sbjct: 239 SRFLDAR-RKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 297
Query: 121 RRNQDRPQLTK 131
+R + + + K
Sbjct: 298 KRIRYKKNIGK 308
>gi|157074214 potassium channel, subfamily U, member 1 [Homo
sapiens]
Length = 1149
Score = 31.6 bits (70), Expect = 1.3
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 26/221 (11%)
Query: 122 RNQDRPQLTKKFCEASWRFLFYLSSFV---GGLSVLYHESWLWAPVMCWDRYPNQTLKPS 178
RN+ L K C + F LSSFV GL +L +W V W Q +K +
Sbjct: 7 RNETWEDLPKMSCTTEIQAAFILSSFVTFFSGLIILLIFRLIWRSVKKW-----QIIKGT 61
Query: 179 LYWWYLLELGFYLSLLIR-LPFDVKRKDFKEQVI--HHFVAVILMTFSYSANLLRIGSLV 235
L G +R L F + +D E ++ FV +L+ + +L IGSL+
Sbjct: 62 GIILELFTSGTIARSHVRSLHFQGQFRDHIEMLLSAQTFVGQVLVILVF---VLSIGSLI 118
Query: 236 LLLHDSSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTRLVLFPTQILYTTYYESISN 295
+ +S+D + +C +Y D +F F +F R + +I + SI +
Sbjct: 119 IYFINSAD-PVGSCS--SYEDKTIPIDLVFNAFFSFYFGLRFMAADDKIKFWLEMNSIVD 175
Query: 296 ----RGPFFGYYFFNGLLML-----LQLLHVFWSCLILRML 327
F YY + L L L+LL + ILR +
Sbjct: 176 IFTIPPTFISYYLKSNWLGLRFLRALRLLELPQILQILRAI 216
>gi|5174681 SIX homeobox 1 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 62 LPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRR 121
LP + W G + K L + + + P + LA GLT Q WF+ R
Sbjct: 117 LPRTIWDGEETSYCFKEKSRGVLREWYAHNPY-PSPREKRELAEATGLTTTQVSNWFKNR 175
Query: 122 RNQDRPQLTKK 132
R +DR K+
Sbjct: 176 RQRDRAAEAKE 186
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 62 LPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHR-PKEPQLSLLAAQCGLTLQQTQRWFRR 120
LP + W G + + A L+ + G+R P + LA GL+L Q WF+
Sbjct: 194 LPKTIWDGEETVYCFKERSRAALKACY--RGNRYPTPDEKRRLATLTGLSLTQVSNWFKN 251
Query: 121 RRNQDR 126
RR +DR
Sbjct: 252 RRQRDR 257
>gi|18860857 menin isoform 1 [Homo sapiens]
Length = 615
Score = 30.4 bits (67), Expect = 2.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 314 LLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEESDSSEEAAAAQEPL--QLKNGAAGGPR 371
+LHV W+ +++ L G+ E +R V EAA A+EP + + G GPR
Sbjct: 436 VLHVGWATFLVQSL------GRFEGQVRQKVRIVSREAEAAEAEEPWGEEAREGRRRGPR 489
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,436,226
Number of Sequences: 37866
Number of extensions: 681002
Number of successful extensions: 3231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3137
Number of HSP's gapped (non-prelim): 93
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.