Guide to the Human Genome
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Name: LASS1 Sequence: fasta or formatted (350aa) NCBI GI: 11641421
Description:

LAG1 homolog, ceramide synthase 1 isoform 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt prot [337aa] LAG1 homolog, ceramide synthase 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         42           3
 C cysteine            1.7          6           2
 D aspartate           4.3         15           1
 E glutamate           2.6          9           1
 F phenylalanine       6.9         24           3
 G glycine             6.6         23           2
 H histidine           3.4         12           2
 I isoleucine          2.6          9           1
 K lysine              4.0         14           1
 L leucine            15.1         53           5
 M methionine          2.0          7           1
 N asparagine          1.4          5           1
 P proline             5.7         20           2
 Q glutamine           2.0          7           1
 R arginine            5.4         19           2
 S serine              6.3         22           2
 T threonine           4.3         15           1
 V valine              4.9         17           2
 W tryptophan          3.1         11           1
 Y tyrosine            5.7         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LAG1 homolog, ceramide synthase 1 isoform 1 
LASS1                 0.963   LAG1 homolog, ceramide synthase 1 isoform 2 
LASS4                 0.121   LAG1 homolog, ceramide synthase 4 
LASS6                 0.107   longevity assurance homolog 6 
LASS2                 0.101   LAG1 longevity assurance 2 
LASS2                 0.101   LAG1 longevity assurance 2 
LASS5                 0.092   LAG1 homolog, ceramide synthase 5 
LASS3                 0.088   LAG1 longevity assurance homolog 3 
TRAM2                 0.024   translocation-associated membrane protein 2 
TRAM1L1               0.009   translocation associated membrane protein 1-like 1 ...
CSHL1                 0.007   chorionic somatomammotropin hormone-like 1 isoform 1...
LOC100292745          0.007   PREDICTED: hypothetical protein 
LOC100290074          0.007   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.007   PREDICTED: hypothetical protein XP_002342693 
GABRD                 0.007   gamma-aminobutyric acid (GABA) A receptor, delta pre...
KAZALD1               0.007   Kazal-type serine peptidase inhibitor domain 1 precu...
FZD5                  0.006   frizzled 5 precursor 
LOC100133915          0.006   PREDICTED: hypothetical protein 
LIMD1                 0.006   LIM domains containing 1 
DMRTA2                0.006   DMRT-like family A2 
POMT2                 0.006   protein-O-mannosyltransferase 2 
DENND2C               0.006   DENN/MADD domain containing 2C 
THNSL2                0.006   threonine synthase-like 2 
LOC100292157          0.004   PREDICTED: hypothetical protein 
LOC100290926          0.004   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.004   PREDICTED: hypothetical protein XP_002343379 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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