Guide to the Human Genome
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Name: LASS2 Sequence: fasta or formatted (380aa) NCBI GI: 32455256
Description:

LAG1 longevity assurance 2

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt mRNA [380aa] LAG1 longevity assurance 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         29           3
 C cysteine            0.5          2           1
 D aspartate           3.9         15           1
 E glutamate           5.8         22           2
 F phenylalanine       7.1         27           2
 G glycine             4.2         16           3
 H histidine           2.4          9           2
 I isoleucine          7.4         28           2
 K lysine              5.0         19           2
 L leucine            12.4         47           2
 M methionine          2.4          9           2
 N asparagine          3.9         15           3
 P proline             3.9         15           2
 Q glutamine           2.6         10           1
 R arginine            6.3         24           4
 S serine              6.1         23           2
 T threonine           4.2         16           1
 V valine              4.7         18           1
 W tryptophan          3.7         14           2
 Y tyrosine            5.8         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LAG1 longevity assurance 2 
LASS2                 1.000   LAG1 longevity assurance 2 
LASS3                 0.525   LAG1 longevity assurance homolog 3 
LASS4                 0.474   LAG1 homolog, ceramide synthase 4 
LASS5                 0.393   LAG1 homolog, ceramide synthase 5 
LASS6                 0.389   longevity assurance homolog 6 
LASS1                 0.094   LAG1 homolog, ceramide synthase 1 isoform 1 
LASS1                 0.090   LAG1 homolog, ceramide synthase 1 isoform 2 
TRAM2                 0.046   translocation-associated membrane protein 2 
TRAM1                 0.041   translocation associated membrane protein 1 
TRAM1L1               0.026   translocation associated membrane protein 1-like 1 ...
SSTR3                 0.015   somatostatin receptor 3 
LHX3                  0.013   LIM homeobox protein 3 isoform a 
LHX3                  0.013   LIM homeobox protein 3 isoform b 
LHX4                  0.012   LIM homeobox protein 4 
ZFHX4                 0.011   zinc finger homeodomain 4 
ZHX3                  0.011   zinc fingers and homeoboxes 3 
SIX4                  0.011   sine oculis homeobox homolog 4 
LHX1                  0.011   LIM homeobox protein 1 
LHX5                  0.011   LIM homeobox protein 5 
SIX3                  0.009   sine oculis homeobox homolog 3 
TGIF1                 0.009   TG-interacting factor isoform a 
TGIF1                 0.009   TG-interacting factor isoform c 
TGIF1                 0.009   TG-interacting factor isoform d 
TGIF1                 0.009   TG-interacting factor isoform d 
TGIF1                 0.009   TG-interacting factor isoform d 
TGIF1                 0.009   TG-interacting factor isoform d 
TGIF1                 0.009   TG-interacting factor isoform c 
TGIF1                 0.009   TG-interacting factor isoform b 
ZHX2                  0.009   zinc fingers and homeoboxes 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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