BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|205277369 microfibrillar-associated protein 3 isoform 2 [Homo sapiens] (216 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|205277369 microfibrillar-associated protein 3 isoform 2 [Homo... 429 e-121 gi|5174555 microfibrillar-associated protein 3 isoform 1 [Homo s... 429 e-121 gi|57222338 microfibrillar-associated protein 3-like isoform 2 [... 239 1e-63 gi|153792329 microfibrillar-associated protein 3-like isoform 1 ... 239 1e-63 gi|57222563 colonic and hepatic tumor over-expressed protein iso... 39 0.004 gi|57164942 colonic and hepatic tumor over-expressed protein iso... 39 0.004 gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 32 0.41 gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 32 0.41 gi|27501450 axin 1 isoform a [Homo sapiens] 30 1.6 gi|31083144 axin 1 isoform b [Homo sapiens] 30 1.6 gi|222537747 hypothetical protein LOC342979 [Homo sapiens] 30 2.0 gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso... 30 2.0 gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isof... 30 2.0 gi|211971012 acyl-Coenzyme A dehydrogenase family, member 10 iso... 30 2.0 gi|71999143 opsin 4 isoform 2 [Homo sapiens] 29 2.7 gi|15150803 opsin 4 isoform 1 [Homo sapiens] 29 2.7 gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 29 3.5 gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 29 3.5 gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 29 3.5 gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens] 29 3.5 gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 28 4.5 gi|33563376 TBC1 domain family, member 16 [Homo sapiens] 28 4.5 gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 7.8 gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 7.8 gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 7.8 gi|29126245 taste receptor, type 2, member 45 [Homo sapiens] 28 7.8 >gi|205277369 microfibrillar-associated protein 3 isoform 2 [Homo sapiens] Length = 216 Score = 429 bits (1103), Expect = e-121 Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI Sbjct: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60 Query: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 120 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD Sbjct: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 120 Query: 121 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 180 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS Sbjct: 121 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 180 Query: 181 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 216 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL Sbjct: 181 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 216 >gi|5174555 microfibrillar-associated protein 3 isoform 1 [Homo sapiens] Length = 362 Score = 429 bits (1103), Expect = e-121 Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI Sbjct: 147 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 206 Query: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 120 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD Sbjct: 207 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDD 266 Query: 121 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 180 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS Sbjct: 267 LGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKS 326 Query: 181 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 216 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL Sbjct: 327 IDTESQGSSHFSPPDDIGSAESNCNYKDGAYENCQL 362 >gi|57222338 microfibrillar-associated protein 3-like isoform 2 [Homo sapiens] Length = 306 Score = 239 bits (610), Expect = 1e-63 Identities = 123/188 (65%), Positives = 147/188 (78%), Gaps = 1/188 (0%) Query: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60 M VYYM+VCL+AFTI ++LN+TRLCMMSSHL+KTEKAINEFFRTEGAEKLQKAFEIAKRI Sbjct: 46 MGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRI 105 Query: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP-D 119 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLI+NCR +EE+ E V +++ Sbjct: 106 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQ 165 Query: 120 DLGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETK 179 + E + +Y I + RS+SP DSD SL+EQ Q+IA++VSVH QS+ + Sbjct: 166 NFVRHTPEGQEAADRDEVYTIPNSLKRSDSPAADSDASSLHEQPQQIAIKVSVHPQSKKE 225 Query: 180 SIDTESQG 187 D + G Sbjct: 226 HADDQEGG 233 >gi|153792329 microfibrillar-associated protein 3-like isoform 1 [Homo sapiens] Length = 409 Score = 239 bits (610), Expect = 1e-63 Identities = 123/188 (65%), Positives = 147/188 (78%), Gaps = 1/188 (0%) Query: 1 MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRI 60 M VYYM+VCL+AFTI ++LN+TRLCMMSSHL+KTEKAINEFFRTEGAEKLQKAFEIAKRI Sbjct: 149 MGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRI 208 Query: 61 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP-D 119 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLI+NCR +EE+ E V +++ Sbjct: 209 PIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEEIMEVVGLEEQGQ 268 Query: 120 DLGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETK 179 + E + +Y I + RS+SP DSD SL+EQ Q+IA++VSVH QS+ + Sbjct: 269 NFVRHTPEGQEAADRDEVYTIPNSLKRSDSPAADSDASSLHEQPQQIAIKVSVHPQSKKE 328 Query: 180 SIDTESQG 187 D + G Sbjct: 329 HADDQEGG 336 >gi|57222563 colonic and hepatic tumor over-expressed protein isoform b [Homo sapiens] Length = 1972 Score = 38.5 bits (88), Expect = 0.004 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%) Query: 35 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 94 EKA+N F KL K E ++++ +I K A +FK P Sbjct: 472 EKAVNPFLADVDKLKLDKIKECSEKVELIHGKKAGLAADKKEFK---------------P 516 Query: 95 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 154 LP A ++ + + P L K+ PA A G P+ G+ +PGG Sbjct: 517 LPGRTAASGAAGDKDTKDISAPKPGPL----KKAPAAKAGG-----PPKKGKPAAPGGAG 567 Query: 155 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKD 208 + G+ N++G E V L SI+ + +S PP I +S+ N+K+ Sbjct: 568 NTGTKNKKGLETKEIVEPEL-----SIEVCEEKASAVLPPTCIQLLDSS-NWKE 615 >gi|57164942 colonic and hepatic tumor over-expressed protein isoform a [Homo sapiens] Length = 2032 Score = 38.5 bits (88), Expect = 0.004 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%) Query: 35 EKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVP 94 EKA+N F KL K E ++++ +I K A +FK P Sbjct: 472 EKAVNPFLADVDKLKLDKIKECSEKVELIHGKKAGLAADKKEFK---------------P 516 Query: 95 LPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDS 154 LP A ++ + + P L K+ PA A G P+ G+ +PGG Sbjct: 517 LPGRTAASGAAGDKDTKDISAPKPGPL----KKAPAAKAGG-----PPKKGKPAAPGGAG 567 Query: 155 DDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKD 208 + G+ N++G E V L SI+ + +S PP I +S+ N+K+ Sbjct: 568 NTGTKNKKGLETKEIVEPEL-----SIEVCEEKASAVLPPTCIQLLDSS-NWKE 615 >gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] Length = 1251 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 117 DPDDLGERIKERPALNAQGGIYVINPEMGRSNSPG--GDSDDGSLNEQGQEIAVQVSVHL 174 D ++ ++ +R AL A V+ R++ P G S S + S Sbjct: 400 DEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGS 459 Query: 175 QSETKSIDTESQGSS--HFSPPD 195 SET+S +ES+GS HFS P+ Sbjct: 460 DSETESSSSESEGSKPPHFSSPE 482 >gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] Length = 1226 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 117 DPDDLGERIKERPALNAQGGIYVINPEMGRSNSPG--GDSDDGSLNEQGQEIAVQVSVHL 174 D ++ ++ +R AL A V+ R++ P G S S + S Sbjct: 375 DEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGS 434 Query: 175 QSETKSIDTESQGSS--HFSPPD 195 SET+S +ES+GS HFS P+ Sbjct: 435 DSETESSSSESEGSKPPHFSSPE 457 >gi|27501450 axin 1 isoform a [Homo sapiens] Length = 862 Score = 30.0 bits (66), Expect = 1.6 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%) Query: 43 RTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNC 102 R + ++Q++ ++ R+P+ +T + K + + +FA EEL + Sbjct: 349 RKQHRREMQESVQVNGRVPLPHIPRTYRVPKEVRVEPQKFA---EELIHRLEAVQRTREA 405 Query: 103 RAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDG--SLN 160 +EE + VR+++ + G+ P+ G + + P + P D G L Sbjct: 406 EEKLEERLKRVRMEEEGEDGD-----PSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLR 460 Query: 161 EQGQEIAVQV-SVHLQSETKSIDTESQGSSHFSP 193 + +E + H+Q ++ +S G H SP Sbjct: 461 DAHEENPESILDEHVQRVLRTPGRQSPGPGHRSP 494 >gi|31083144 axin 1 isoform b [Homo sapiens] Length = 826 Score = 30.0 bits (66), Expect = 1.6 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%) Query: 43 RTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNC 102 R + ++Q++ ++ R+P+ +T + K + + +FA EEL + Sbjct: 349 RKQHRREMQESVQVNGRVPLPHIPRTYRVPKEVRVEPQKFA---EELIHRLEAVQRTREA 405 Query: 103 RAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINPEMGRSNSPGGDSDDG--SLN 160 +EE + VR+++ + G+ P+ G + + P + P D G L Sbjct: 406 EEKLEERLKRVRMEEEGEDGD-----PSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLR 460 Query: 161 EQGQEIAVQV-SVHLQSETKSIDTESQGSSHFSP 193 + +E + H+Q ++ +S G H SP Sbjct: 461 DAHEENPESILDEHVQRVLRTPGRQSPGPGHRSP 494 >gi|222537747 hypothetical protein LOC342979 [Homo sapiens] Length = 673 Score = 29.6 bits (65), Expect = 2.0 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 18/93 (19%) Query: 90 ARSVPLPPLILNCRAFVEEMFEAVRVDDPDDLGE-------------RIKERPALNAQGG 136 A S+ LP + R VE ++E V D + +GE R++ER A Sbjct: 258 AGSLELPAWVKEDRGIVEVVWEGVGGSDAEAMGEIGRVPEVVQTSSPRLQERLEAAAS-- 315 Query: 137 IYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQ 169 I E SP GD GS E+G I V+ Sbjct: 316 ---IEGEDVPQGSPEGDGQGGSGGEEGSFIWVE 345 >gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 isoform a [Homo sapiens] Length = 1090 Score = 29.6 bits (65), Expect = 2.0 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 35/138 (25%) Query: 23 RLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEF 82 RLC S + KT ++ FF +E+ +AK+ P++T A T AK Q + Sbjct: 107 RLC---SEMLKTSVPVDSFFSLLTSER------VAKQFPVMTEAITQIRAKGLQTAVLSN 157 Query: 83 ARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP--------------------DDLG 122 Y+ +PL + VE E + DP DDLG Sbjct: 158 NFYLPNQKSFLPLDRKQFD--VIVESCMEGICKPDPRIYKLCLEQLGLQPSESIFLDDLG 215 Query: 123 ERIKERPALNAQGGIYVI 140 +KE L GI+ I Sbjct: 216 TNLKEAARL----GIHTI 229 >gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isoform b [Homo sapiens] Length = 1059 Score = 29.6 bits (65), Expect = 2.0 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 35/138 (25%) Query: 23 RLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEF 82 RLC S + KT ++ FF +E+ +AK+ P++T A T AK Q + Sbjct: 107 RLC---SEMLKTSVPVDSFFSLLTSER------VAKQFPVMTEAITQIRAKGLQTAVLSN 157 Query: 83 ARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP--------------------DDLG 122 Y+ +PL + VE E + DP DDLG Sbjct: 158 NFYLPNQKSFLPLDRKQFD--VIVESCMEGICKPDPRIYKLCLEQLGLQPSESIFLDDLG 215 Query: 123 ERIKERPALNAQGGIYVI 140 +KE L GI+ I Sbjct: 216 TNLKEAARL----GIHTI 229 >gi|211971012 acyl-Coenzyme A dehydrogenase family, member 10 isoform c [Homo sapiens] Length = 890 Score = 29.6 bits (65), Expect = 2.0 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 35/138 (25%) Query: 23 RLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEF 82 RLC S + KT ++ FF +E+ +AK+ P++T A T AK Q + Sbjct: 107 RLC---SEMLKTSVPVDSFFSLLTSER------VAKQFPVMTEAITQIRAKGLQTAVLSN 157 Query: 83 ARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDP--------------------DDLG 122 Y+ +PL + VE E + DP DDLG Sbjct: 158 NFYLPNQKSFLPLDRKQFD--VIVESCMEGICKPDPRIYKLCLEQLGLQPSESIFLDDLG 215 Query: 123 ERIKERPALNAQGGIYVI 140 +KE L GI+ I Sbjct: 216 TNLKEAARL----GIHTI 229 >gi|71999143 opsin 4 isoform 2 [Homo sapiens] Length = 489 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 4 YYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEG-------AEKLQKAFEI 56 Y M++C F + L++ + + +R+T +A+ F +G ++LQ ++ Sbjct: 246 YTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKM 305 Query: 57 AKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIL 100 AK + ++ L A + + FA Y L + P ++ Sbjct: 306 AKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVI 349 >gi|15150803 opsin 4 isoform 1 [Homo sapiens] Length = 478 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 4 YYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEG-------AEKLQKAFEI 56 Y M++C F + L++ + + +R+T +A+ F +G ++LQ ++ Sbjct: 235 YTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKM 294 Query: 57 AKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIL 100 AK + ++ L A + + FA Y L + P ++ Sbjct: 295 AKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVI 338 >gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] Length = 1884 Score = 28.9 bits (63), Expect = 3.5 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%) Query: 129 PALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQV-----SVHLQSETKSIDT 183 P LNA + V+ PE+ + + PG + + +Q E VQ S +L S+ Sbjct: 1078 PKLNAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLE--- 1134 Query: 184 ESQGSSHFS-----PPDDI 197 + GSSH S PDD+ Sbjct: 1135 QPMGSSHASQVCSETPDDL 1153 >gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] Length = 1816 Score = 28.9 bits (63), Expect = 3.5 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%) Query: 129 PALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQV-----SVHLQSETKSIDT 183 P LNA + V+ PE+ + + PG + + +Q E VQ S +L S+ Sbjct: 1031 PKLNAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLE--- 1087 Query: 184 ESQGSSHFS-----PPDDI 197 + GSSH S PDD+ Sbjct: 1088 QPMGSSHASQVCSETPDDL 1106 >gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] Length = 1863 Score = 28.9 bits (63), Expect = 3.5 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%) Query: 129 PALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQV-----SVHLQSETKSIDT 183 P LNA + V+ PE+ + + PG + + +Q E VQ S +L S+ Sbjct: 1078 PKLNAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLE--- 1134 Query: 184 ESQGSSHFS-----PPDDI 197 + GSSH S PDD+ Sbjct: 1135 QPMGSSHASQVCSETPDDL 1153 >gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens] Length = 1150 Score = 28.9 bits (63), Expect = 3.5 Identities = 11/23 (47%), Positives = 18/23 (78%) Query: 159 LNEQGQEIAVQVSVHLQSETKSI 181 L+E+GQ +AVQ+S H S T+++ Sbjct: 676 LSEEGQPLAVQISAHWSSATEAV 698 >gi|119829187 alpha 1 type XVII collagen [Homo sapiens] Length = 1497 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 129 PALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSET 178 P+ ++GG G PG GS++ GQEI +S ++QS++ Sbjct: 977 PSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSDS 1026 >gi|33563376 TBC1 domain family, member 16 [Homo sapiens] Length = 767 Score = 28.5 bits (62), Expect = 4.5 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 26/138 (18%) Query: 89 LARSVPLPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVINP----EM 144 +A+SVP L E++ + + VD G + +PA + G + ++P E Sbjct: 144 VAQSVPDRMLASPAPEDEEKLAQGLGVD-----GAQPASQPACSPSGILSTVSPQDVTEE 198 Query: 145 GRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSID----------TESQGS----SH 190 GR P +DGSL + ++ S S+T S ES+GS S Sbjct: 199 GREPRPEAGEEDGSLELSAEGVSRDSSFDSDSDTFSSPFCLSPISAALAESRGSVFLESD 258 Query: 191 FSPPDDIGSAESNCNYKD 208 SPP S+++ + D Sbjct: 259 SSPP---SSSDAGLRFPD 273 >gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo sapiens] Length = 625 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 127 ERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQ 186 + PA Q G P SP DSD S E+ +E + ++ + +IDT Sbjct: 499 DEPAAGVQNGAPSPAP------SPDSDSDSDSDGEEEEE---EEGERDETPSGAIDTRDT 549 Query: 187 GSSHFSPPDD 196 GSS PP + Sbjct: 550 GSSEPQPPPE 559 >gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo sapiens] Length = 625 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 127 ERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQ 186 + PA Q G P SP DSD S E+ +E + ++ + +IDT Sbjct: 499 DEPAAGVQNGAPSPAP------SPDSDSDSDSDGEEEEE---EEGERDETPSGAIDTRDT 549 Query: 187 GSSHFSPPDD 196 GSS PP + Sbjct: 550 GSSEPQPPPE 559 >gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo sapiens] Length = 625 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 127 ERPALNAQGGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQ 186 + PA Q G P SP DSD S E+ +E + ++ + +IDT Sbjct: 499 DEPAAGVQNGAPSPAP------SPDSDSDSDSDGEEEEE---EEGERDETPSGAIDTRDT 549 Query: 187 GSSHFSPPDD 196 GSS PP + Sbjct: 550 GSSEPQPPPE 559 >gi|29126245 taste receptor, type 2, member 45 [Homo sapiens] Length = 299 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 6 MIVCLIAFTITLILNVTRLCMMSSHLRKTE 35 M+ L+ FT+TLI + +C + HL+K + Sbjct: 181 MLANLVPFTVTLISFLLLVCSLCKHLKKMQ 210 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,763,939 Number of Sequences: 37866 Number of extensions: 315247 Number of successful extensions: 1083 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1071 Number of HSP's gapped (non-prelim): 29 length of query: 216 length of database: 18,247,518 effective HSP length: 98 effective length of query: 118 effective length of database: 14,536,650 effective search space: 1715324700 effective search space used: 1715324700 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.