Guide to the Human Genome
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Name: AXIN1 Sequence: fasta or formatted (826aa) NCBI GI: 31083144
Description:

axin 1 isoform b

Referenced in:

Wnt Signals

Other entries for this name:
alt prot [862aa] axin 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         63           2
 C cysteine            1.7         14           1
 D aspartate           5.2         43           2
 E glutamate           9.3         77           4
 F phenylalanine       2.7         22           1
 G glycine             8.1         67           3
 H histidine           3.8         31           3
 I isoleucine          3.1         26           2
 K lysine              5.8         48           2
 L leucine             6.8         56           3
 M methionine          1.3         11           1
 N asparagine          1.9         16           2
 P proline             8.4         69           2
 Q glutamine           4.1         34           2
 R arginine            7.9         65           3
 S serine              8.8         73           3
 T threonine           4.4         36           1
 V valine              5.3         44           2
 W tryptophan          1.0          8           1
 Y tyrosine            2.8         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   axin 1 isoform b 
AXIN1                 0.989   axin 1 isoform a 
AXIN2                 0.342   axin 2 
RGS3                  0.032   regulator of G-protein signalling 3 isoform 4 
RGS3                  0.032   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.032   regulator of G-protein signalling 3 isoform 5 
RGS3                  0.032   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.032   regulator of G-protein signalling 3 isoform 1 
RGS10                 0.032   regulator of G-protein signaling 10 isoform b 
RGS10                 0.032   regulator of G-protein signaling 10 isoform a 
RGS5                  0.030   regulator of G-protein signalling 5 
RGS18                 0.029   regulator of G-protein signalling 18 
RGS1                  0.029   regulator of G-protein signalling 1 
RGS21                 0.029   regulator of G-protein signaling 21 
RGS8                  0.028   regulator of G-protein signalling 8 isoform 1 
RGS8                  0.028   regulator of G-protein signalling 8 isoform 2 [Homo...
RGS4                  0.026   regulator of G-protein signaling 4 isoform 3 
RGS4                  0.026   regulator of G-protein signaling 4 isoform 2 
RGS4                  0.026   regulator of G-protein signaling 4 isoform 1 
RGS2                  0.026   regulator of G-protein signaling 2, 24kDa 
RGS17                 0.023   regulator of G-protein signalling 17 
RGS14                 0.023   regulator of G-protein signalling 14 
RGS20                 0.023   regulator of G-protein signaling 20 isoform b 
RGS20                 0.023   regulator of G-protein signaling 20 isoform a 
RGS16                 0.023   regulator of G-protein signalling 16 
RGS19                 0.022   G protein signalling regulator 19 
RGS19                 0.022   G protein signalling regulator 19 
RGS13                 0.021   regulator of G-protein signalling 13 
RGS13                 0.021   regulator of G-protein signalling 13 
RGS12                 0.015   regulator of G-protein signalling 12 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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