Guide to the Human Genome
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Name: C5orf32 Sequence: fasta or formatted (97aa) NCBI GI: 14165278
Description:

hypothetical protein LOC84418

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          3           1
 C cysteine            6.2          6           4
 D aspartate           3.1          3           1
 E glutamate           4.1          4           1
 F phenylalanine       0.0          0           0
 G glycine            12.4         12           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              1.0          1           1
 L leucine             5.2          5           1
 M methionine          4.1          4           1
 N asparagine          2.1          2           1
 P proline            24.7         24           3
 Q glutamine           8.2          8           1
 R arginine            2.1          2           2
 S serine              1.0          1           1
 T threonine           7.2          7           2
 V valine              3.1          3           2
 W tryptophan          3.1          3           1
 Y tyrosine            9.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84418 
DIAPH3                0.110   diaphanous homolog 3 isoform b 
DIAPH3                0.110   diaphanous homolog 3 isoform a 
WASF2                 0.105   WAS protein family, member 2 
GRINA                 0.105   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.105   glutamate receptor, ionotropic, N-methyl D-aspartate...
KHSRP                 0.105   KH-type splicing regulatory protein 
SF3B4                 0.105   splicing factor 3b, subunit 4 
PRH1                  0.100   proline-rich protein HaeIII subfamily 1 
PRH2                  0.100   proline-rich protein HaeIII subfamily 2 
PRH2                  0.100   proline-rich protein HaeIII subfamily 2 
LOC644844             0.100   hypothetical protein LOC644844 
PRB2                  0.100   proline-rich protein BstNI subfamily 2 
PRB1                  0.100   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.096   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.096   proline-rich protein BstNI subfamily 1 isoform 2 pre...
FMN1                  0.091   formin 1 
LDB3                  0.091   LIM domain binding 3 isoform 2 
LDB3                  0.091   LIM domain binding 3 isoform 1 
PLSCR1                0.091   phospholipid scramblase 1 
PRB3                  0.091   proline-rich protein BstNI subfamily 3 precursor [H...
HCN2                  0.091   hyperpolarization activated cyclic nucleotide-gated...
DAZAP1                0.091   DAZ associated protein 1 isoform a 
DAZAP1                0.091   DAZ associated protein 1 isoform b 
ANXA11                0.091   annexin A11 
ANXA11                0.091   annexin A11 
ANXA11                0.091   annexin A11 
WAS                   0.086   Wiskott-Aldrich syndrome protein 
VASP                  0.086   vasodilator-stimulated phosphoprotein 
FUBP1                 0.086   far upstream element-binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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