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Search of human proteins with 113423529
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
(276 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 586 e-168
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 48 1e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 48 1e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 48 1e-05
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 47 2e-05
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 45 5e-05
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 45 5e-05
gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens] 43 3e-04
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 42 8e-04
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 41 0.001
gi|109452587 family with sequence similarity 98, member B isofor... 41 0.001
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 41 0.001
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 40 0.002
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 40 0.002
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.005
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 39 0.006
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 39 0.006
gi|59709427 XK, Kell blood group complex subunit-related family,... 39 0.006
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 38 0.008
gi|6912372 forkhead box D3 [Homo sapiens] 38 0.008
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 38 0.011
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 38 0.011
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 586 bits (1510), Expect = e-168
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MDRLGSGILLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGG 60
MDRLGSGILLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGG
Sbjct: 1 MDRLGSGILLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGG 60
Query: 61 GGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
GGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL
Sbjct: 61 GGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
Query: 121 WSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPA 180
WSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPA
Sbjct: 121 WSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPA 180
Query: 181 WGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGT 240
WGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGT
Sbjct: 181 WGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGT 240
Query: 241 PLGPRGRVCARRLRWVRPFGFRLTTRGLRVRDPRGK 276
PLGPRGRVCARRLRWVRPFGFRLTTRGLRVRDPRGK
Sbjct: 241 PLGPRGRVCARRLRWVRPFGFRLTTRGLRVRDPRGK 276
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 47.8 bits (112), Expect = 1e-05
Identities = 64/242 (26%), Positives = 80/242 (33%), Gaps = 51/242 (21%)
Query: 30 RLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGG 89
R G G GG GG GG G GGGGG + A A + A GG GG
Sbjct: 245 RPGAGGGGG-------GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Query: 90 LGEG------------RQDGGG-EVGRAGRRCCRRHRRLRSSRLWSFK-----------L 125
G G RQ GGG +G G + S F+
Sbjct: 298 GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGA 357
Query: 126 TPPGRSCAGAGS---RGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWG 182
TP + S R S+P SPS P P S P AG G A G
Sbjct: 358 TPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP-QSQAAAAGAAAGGQQAAAGMG 416
Query: 183 LPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPL 242
L + + AA S P + +A R + PG + R+ G+P+
Sbjct: 417 LGKDMGAQYAAAS----------------PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPM 460
Query: 243 GP 244
P
Sbjct: 461 DP 462
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 47.8 bits (112), Expect = 1e-05
Identities = 64/242 (26%), Positives = 80/242 (33%), Gaps = 51/242 (21%)
Query: 30 RLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGG 89
R G G GG GG GG G GGGGG + A A + A GG GG
Sbjct: 245 RPGAGGGGG-------GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Query: 90 LGEG------------RQDGGG-EVGRAGRRCCRRHRRLRSSRLWSFK-----------L 125
G G RQ GGG +G G + S F+
Sbjct: 298 GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGA 357
Query: 126 TPPGRSCAGAGS---RGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWG 182
TP + S R S+P SPS P P S P AG G A G
Sbjct: 358 TPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP-QSQAAAAGAAAGGQQAAAGMG 416
Query: 183 LPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPL 242
L + + AA S P + +A R + PG + R+ G+P+
Sbjct: 417 LGKDMGAQYAAAS----------------PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPM 460
Query: 243 GP 244
P
Sbjct: 461 DP 462
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 47.8 bits (112), Expect = 1e-05
Identities = 64/242 (26%), Positives = 80/242 (33%), Gaps = 51/242 (21%)
Query: 30 RLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGG 89
R G G GG GG GG G GGGGG + A A + A GG GG
Sbjct: 245 RPGAGGGGG-------GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Query: 90 LGEG------------RQDGGG-EVGRAGRRCCRRHRRLRSSRLWSFK-----------L 125
G G RQ GGG +G G + S F+
Sbjct: 298 GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGA 357
Query: 126 TPPGRSCAGAGS---RGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWG 182
TP + S R S+P SPS P P S P AG G A G
Sbjct: 358 TPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP-QSQAAAAGAAAGGQQAAAGMG 416
Query: 183 LPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPL 242
L + + AA S P + +A R + PG + R+ G+P+
Sbjct: 417 LGKDMGAQYAAAS----------------PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPM 460
Query: 243 GP 244
P
Sbjct: 461 DP 462
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/148 (29%), Positives = 54/148 (36%), Gaps = 26/148 (17%)
Query: 32 GGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLG 91
GG Q GE G RGG+G G GG + SR+G A G G G
Sbjct: 518 GGNQCSGEG-----QGSRGGQGSNGQGSGGNQCSRDGQGTA-------------GGHGSG 559
Query: 92 EGRQDGGGEVGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPS 151
G++ GGG G+ H K + G+ G G RG+S F
Sbjct: 560 GGQRPGGGHGSGGGQGPGDGHGSGGGKNSGGGKGSGSGKGSDGDGERGKSLKKRSYFGKL 619
Query: 152 TL--------PLPDSLPLPPSGGRAGPG 171
T P P P PP+GG G G
Sbjct: 620 TQSKQQQMPPPPPPPPPPPPAGGTGGKG 647
Score = 32.7 bits (73), Expect = 0.35
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 32 GGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRC---------PSPA 82
GGG++ G GG+ G G+ G G KS + + +L + P P
Sbjct: 583 GGGKNSG-------GGKGSGSGKGSDGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPPP 635
Query: 83 PPGGAGGLGEGRQDGGGE------VGRAGRRCCRRHRRLRSSRL 120
PP AGG G G+ GG V R + C+ + ++ + +
Sbjct: 636 PPPPAGGTG-GKGKSGGRFRLYFCVDRGATKECKEAKEVKDAEI 678
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 45.4 bits (106), Expect = 5e-05
Identities = 64/234 (27%), Positives = 90/234 (38%), Gaps = 61/234 (26%)
Query: 69 AACARRLIRCPSPAPPGG--------AGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
+A R L SP+P AG G G D G+ R H R + R
Sbjct: 53 SAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQERP----HAREKGGRG 108
Query: 121 WSF-------KLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPS-GGRAGPG- 171
W + +L R+C G GSR + + P P +LP+P S PLPP GG+ G
Sbjct: 109 WGWSTPTANPRLCREARACGGPGSRARTPAAPAPL--WSLPMPTS-PLPPGVGGQPQLGK 165
Query: 172 ----------WGDSHLAPAWGLPRRLPL-LAAARSGALGGMFPTAAPLYSLPLFVSAGPR 220
W ++ + PR P LA+ R G++ S+ L V+A
Sbjct: 166 PTVDSAWSGTWQEAGVGEGSPQPRFSPKDLASGRGGSVS----------SMELSVTAA-- 213
Query: 221 CRRSWGFRAPGAPLSRAGGTPLG--------PRGRVCARRLR---WVRPFGFRL 263
W +A P S + G LG GRVC+ + R ++ PF L
Sbjct: 214 ---CWTSKARPGPPSSSFGEVLGFCPSCVLVSPGRVCSTQQRSKLYLWPFNLEL 264
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 45.4 bits (106), Expect = 5e-05
Identities = 64/234 (27%), Positives = 90/234 (38%), Gaps = 61/234 (26%)
Query: 69 AACARRLIRCPSPAPPGG--------AGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
+A R L SP+P AG G G D G+ R H R + R
Sbjct: 53 SAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQERP----HAREKGGRG 108
Query: 121 WSF-------KLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPS-GGRAGPG- 171
W + +L R+C G GSR + + P P +LP+P S PLPP GG+ G
Sbjct: 109 WGWSTPTANPRLCREARACGGPGSRARTPAAPAPL--WSLPMPTS-PLPPGVGGQPQLGK 165
Query: 172 ----------WGDSHLAPAWGLPRRLPL-LAAARSGALGGMFPTAAPLYSLPLFVSAGPR 220
W ++ + PR P LA+ R G++ S+ L V+A
Sbjct: 166 PTVDSAWSGTWQEAGVGEGSPQPRFSPKDLASGRGGSVS----------SMELSVTAA-- 213
Query: 221 CRRSWGFRAPGAPLSRAGGTPLG--------PRGRVCARRLR---WVRPFGFRL 263
W +A P S + G LG GRVC+ + R ++ PF L
Sbjct: 214 ---CWTSKARPGPPSSSFGEVLGFCPSCVLVSPGRVCSTQQRSKLYLWPFNLEL 264
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 45.4 bits (106), Expect = 5e-05
Identities = 64/234 (27%), Positives = 90/234 (38%), Gaps = 61/234 (26%)
Query: 69 AACARRLIRCPSPAPPGG--------AGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
+A R L SP+P AG G G D G+ R H R + R
Sbjct: 53 SAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQERP----HAREKGGRG 108
Query: 121 WSF-------KLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPS-GGRAGPG- 171
W + +L R+C G GSR + + P P +LP+P S PLPP GG+ G
Sbjct: 109 WGWSTPTANPRLCREARACGGPGSRARTPAAPAPL--WSLPMPTS-PLPPGVGGQPQLGK 165
Query: 172 ----------WGDSHLAPAWGLPRRLPL-LAAARSGALGGMFPTAAPLYSLPLFVSAGPR 220
W ++ + PR P LA+ R G++ S+ L V+A
Sbjct: 166 PTVDSAWSGTWQEAGVGEGSPQPRFSPKDLASGRGGSVS----------SMELSVTAA-- 213
Query: 221 CRRSWGFRAPGAPLSRAGGTPLG--------PRGRVCARRLR---WVRPFGFRL 263
W +A P S + G LG GRVC+ + R ++ PF L
Sbjct: 214 ---CWTSKARPGPPSSSFGEVLGFCPSCVLVSPGRVCSTQQRSKLYLWPFNLEL 264
>gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens]
Length = 481
Score = 43.1 bits (100), Expect = 3e-04
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 127 PPGRSCAGAGSRGESK-----SFPWPFSPSTL--PLPDSLPLPPSGGRAGPGWGDSHLAP 179
PP +S G G S +F PF+ PLP + P P+G GPG+G S P
Sbjct: 342 PPLQSVTMGGGGGSSTGLAFGAFTNPFTAPAAQSPLPSTNPFQPNGLAPGPGFGMSSAGP 401
Query: 180 AWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGG 239
G P+ +P A S +FP PL S G G R PLS+ G
Sbjct: 402 --GFPQAVPPTGAFASSFPAPLFPPQTPLVQQQNGSSFGDLGSAKLGQR----PLSQPAG 455
Query: 240 TPLGP 244
P
Sbjct: 456 ISTNP 460
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 41.6 bits (96), Expect = 8e-04
Identities = 51/152 (33%), Positives = 61/152 (40%), Gaps = 43/152 (28%)
Query: 14 TGTGP-RIAGGVRFWRRRLGGGQD----GGEIIFLHLGGRRGGEG--------RREAGGG 60
T GP R +GG R WRR GG + G + L L GR G G R+EAG
Sbjct: 517 TFVGPLRRSGGGRGWRRDGGGRRQRFLGAGHLRSLSLRGRAPGRGLFHVALLMRQEAG-- 574
Query: 61 GGRKSREGAACARRLIRCPSPAP------------PGG--AGGLGEGRQDGGGEVGRAGR 106
+ REGA A R P+ +P P G AG G+ R+ GGG GR
Sbjct: 575 ---QLREGAVAAAAAERLPAGSPVAVLVAGEPSHRPEGLAAGQTGKARRGGGG-----GR 626
Query: 107 RCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSR 138
R R+ R W L G G G R
Sbjct: 627 RGLRQRGR------WLVGLGRLGGCLLGLGRR 652
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 48 RRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRR 107
+R E REA GG R + + + A+ + + P G+G G G +DG G G A R
Sbjct: 21 KRPREREREAEAGGRRAAHKASGGAKHPVPARARDKPRGSGSGGGGHRDGRG-TGDANHR 79
Query: 108 CCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWP--FSPSTLPLPDSLPLPPSG 165
RSS G G G G++ P SP PLP P PP
Sbjct: 80 ASSG----RSS----------GSGAGGGGRGGKASGDPGASGMSPRASPLPPP-PPPPGA 124
Query: 166 GRAGPG 171
A PG
Sbjct: 125 EPACPG 130
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/79 (39%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 28 RRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGA 87
+R+ GGG GG GG GG GR GGGGGR G GG
Sbjct: 327 KRQEGGGGRGG------WGGGGGGGGRGGGGGGGGRGGWGGGG---------GGWGGGGG 371
Query: 88 GGLGEGRQDGGGEVGRAGR 106
GG G G GGG G GR
Sbjct: 372 GGGGWGGGGGGGRGGFQGR 390
Score = 34.7 bits (78), Expect = 0.093
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 15 GTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARR 74
G G R GG R GGG G GG GG G GGGGGR +G
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGGGW-------GGGGGGGGGWGGGGGGGRGGFQGRGDYGG 395
Query: 75 LIRCPSPAPPGGAGGLGEGRQDGGGEVGRAG 105
GG GG G G GGG G G
Sbjct: 396 R---GGYGGRGGYGGRGYGDPYGGGGGGGGG 423
Score = 34.3 bits (77), Expect = 0.12
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 32 GGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLG 91
GGG GG GGR G +GR + GG GG R G P GG GG G
Sbjct: 373 GGGWGGGGG-----GGRGGFQGRGDYGGRGGYGGRGGYGGR------GYGDPYGGGGGGG 421
Query: 92 EGRQDGGG 99
G GGG
Sbjct: 422 GGGGGGGG 429
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 40.8 bits (94), Expect = 0.001
Identities = 55/178 (30%), Positives = 66/178 (37%), Gaps = 39/178 (21%)
Query: 47 GRRG-GEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAG 105
GRRG G G EAG G + G RR A P G+ DGGG G A
Sbjct: 50 GRRGKGSGGPEAGADGLSRGERG---PRRAAVPELSAQPAGSPRASLAGSDGGGGGGSAR 106
Query: 106 RRCC-----RRHRRLRSSRLWSFKLTPPGRSCAGA--------GSRGESKSF-------- 144
+RH RS R S PG G+ GSRG + ++
Sbjct: 107 SSGISLGYDQRHGSPRSGR--SDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPPGA 164
Query: 145 -------PWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWGLPRRLPLLAAARS 195
P P P+ PLP +LPLPP G GP + L L R L AR+
Sbjct: 165 CPAPARSPEPAGPAPFPLP-ALPLPP-GREGGPSAAERRLE---ALTRELERALEART 217
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 22/74 (29%)
Query: 46 GGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAG 105
G RGG GR AGGGGG GG GG G R GGGE R G
Sbjct: 162 GAERGGSGRSSAGGGGG--------------------GGGGGGGRGSRRGRGGGE--RGG 199
Query: 106 RRCCRRHRRLRSSR 119
R RRL + R
Sbjct: 200 PRAQAVRRRLSALR 213
Score = 28.9 bits (63), Expect = 5.1
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 105 GRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPS 164
G+RC + S +F L PG+ A AGS T P P++ P
Sbjct: 8 GQRCADKAGSAESEENRNFLLMRPGQRTAPAGS-------------PTTPRPENDPSREI 54
Query: 165 GGRAGPGWGD---SHLAPAWGLPRRLP 188
G G +H AP P RLP
Sbjct: 55 GEARASGQDQVLPTHPAPCHSYPTRLP 81
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 48 RRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGR-QDGGGEVGRAGR 106
R GRR +GGG SR+G +R SPA GG G R + G+ R G
Sbjct: 434 RSRSRGRRHSGGG----SRDGHRYSR------SPARRGGYGPRRRSRSRSHSGDRYRRGG 483
Query: 107 RCCRRHRRLRSSRLWSF-----KLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPL 161
R R H RS WS + RS + + S+ S+S SPS P + L
Sbjct: 484 RGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTR 543
Query: 162 PPSGGRAG 169
P + G
Sbjct: 544 PAASPAVG 551
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 38/132 (28%)
Query: 46 GGRRGGEGRREA--------GGGGGRKSREGAACARRLIRCPSPAPPG------------ 85
GG R G+ R+E G G R++R A A R P PG
Sbjct: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
Query: 86 ------GAGGLGEGRQDGGGEVGRAG--RRCCRRHRRLRSSR--LWSFKLTPPGRSCAGA 135
G + G + G G G G RR CR RL +SR WS + +P
Sbjct: 125 GPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSP-------- 176
Query: 136 GSRGESKSFPWP 147
G RG S + WP
Sbjct: 177 GLRGTSPAQAWP 188
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 39.7 bits (91), Expect = 0.003
Identities = 44/143 (30%), Positives = 53/143 (37%), Gaps = 20/143 (13%)
Query: 47 GRRGGEG----RREAGG-GGGRKSREGAACARRLIRCPSP-APPGGAGGLGEGRQDGG-- 98
G+RG EG R EAG G G K GAA P P PPG G +G G
Sbjct: 621 GQRGREGPMGPRGEAGPPGSGEKGERGAAGE------PGPHGPPGVPGSVGPKGSSGSPG 674
Query: 99 --GEVGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLP 156
G G G + R L + + PPG G +GE P LP
Sbjct: 675 PQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPK----GDQGEKGPRGLTGEPGMRGLP 730
Query: 157 DSLPLPPSGGRAGPGWGDSHLAP 179
++ P + G GP D H P
Sbjct: 731 GAVGEPGAKGAMGPAGPDGHQGP 753
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.9 bits (89), Expect = 0.005
Identities = 60/209 (28%), Positives = 75/209 (35%), Gaps = 19/209 (9%)
Query: 47 GRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGR 106
G G +G G G + +G A + P PA P G G G Q G++G G
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG-KPGEQGVPGDLGAPGP 672
Query: 107 RCCRRHRRLRSSRLWSFKLTPPG-RSCAGA-GSRGESKSFPWPFSPSTLPLPDSLPLPPS 164
R R R P G R GA G+ G P +P + P +P
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732
Query: 165 GGRAG-PG----WGDSHLAPAWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVS--A 217
G AG PG GD+ A G P + + +G +G P AP S A
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGV--RGLTGPIGPPGPAGAPGDKGESGPSGPA 790
Query: 218 GPRCRRSWGFRAPGAPLSRAGGTPLGPRG 246
GP R GAP R P GP G
Sbjct: 791 GPTGAR-------GAPGDRGEPGPPGPAG 812
Score = 33.9 bits (76), Expect = 0.16
Identities = 60/211 (28%), Positives = 70/211 (33%), Gaps = 60/211 (28%)
Query: 47 GRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGG-------G 99
G+ GG+G R G GR G P PPG AG G DG G
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGP-----------PGPPGPAGEKGSPGADGPAGAPGTPG 950
Query: 100 EVGRAGRRCCRRHRRLRSSRLWSFKLTPPGR--SCAGAGSRGESKSFPWPFSPSTLPLPD 157
G AG+R R R + P G +G+ GE + P P P L P
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE-RGPPGPMGPPGLAGP- 1008
Query: 158 SLPLPPSGGRAG-PGWGDSHLAPAWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVS 216
P GR G PG A G P R GA G T
Sbjct: 1009 ----PGESGREGAPG--------AEGSPGR-----DGSPGAKGDRGETGP---------- 1041
Query: 217 AGPRCRRSWGFRAPGAPLSRAGGTPLGPRGR 247
AGP PGAP + P+GP G+
Sbjct: 1042 AGP----------PGAPGAPGAPGPVGPAGK 1062
Score = 30.0 bits (66), Expect = 2.3
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 45 LGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPA-PPGGAGGLG-------EGRQD 96
L G G GR A G G R+G+ A+ PA PPG G G G+
Sbjct: 1005 LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 1064
Query: 97 GGGEVGRAG 105
GE G AG
Sbjct: 1065 DRGETGPAG 1073
Score = 29.6 bits (65), Expect = 3.0
Identities = 57/206 (27%), Positives = 64/206 (31%), Gaps = 52/206 (25%)
Query: 47 GRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGE----GRQDGGGEVG 102
G RG G + GG G K G A P G G GE G Q G G
Sbjct: 413 GARGPSGPQGPGGPPGPKGNSGEPGA--------PGSKGDTGAKGEPGPVGVQGPPGPAG 464
Query: 103 RAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLP 162
G+R G+RGE P P P S P
Sbjct: 465 EEGKR----------------------------GARGEPGPTGLPGPPGERGGPGSRGFP 496
Query: 163 PSGGRAGP-GWGDSHLAPAWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRC 221
+ G AGP G +P P+ P A R G G P A L P S GP
Sbjct: 497 GADGVAGPKGPAGERGSPGPAGPKGSP-GEAGRPGEAG--LPGAKGLTGSP--GSPGPD- 550
Query: 222 RRSWGFRAPGAPLSRAGGT-PLGPRG 246
G P P + G P GP G
Sbjct: 551 ----GKTGPPGPAGQDGRPGPPGPPG 572
Score = 28.9 bits (63), Expect = 5.1
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 13/125 (10%)
Query: 47 GRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLG-EGRQDGGGEVGRAG 105
G G GR A G G + +GA A P P G AG G G GE G G
Sbjct: 305 GLPGERGRPGAPGPAGARGNDGATGA-----AGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Query: 106 RRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSG 165
R + +R + PPG + A AG G + P + P P
Sbjct: 360 PRGSEGPQGVRG------EPGPPGPAGA-AGPAGNPGADGQPGAKGANGAPGIAGAPGFP 412
Query: 166 GRAGP 170
G GP
Sbjct: 413 GARGP 417
Score = 28.5 bits (62), Expect = 6.7
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 45 LGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGG-AGGLGE-GRQDGGGEVG 102
L G+RG G G G ++G + A P P P G AG GE GR+ G G
Sbjct: 963 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 1022
Query: 103 RAGR 106
GR
Sbjct: 1023 SPGR 1026
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.005
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 3 RLGSGILLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLG-----GRRGGEGRREA 57
RLGSG+ L T G GPR G R W G G+ G + L +G G GG R
Sbjct: 86 RLGSGLGLTTTPGLGPRALCGPRGW--AAGRGEAGATGLRLSVGAATVRGWAGGYFR--- 140
Query: 58 GGGGGRKSREGAACARR---LIRCPSPAPP 84
G GGR E A L+ P P PP
Sbjct: 141 -GDGGRGVSESVAVGTGPDFLLLSPPPPPP 169
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.005
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 3 RLGSGILLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLG-----GRRGGEGRREA 57
RLGSG+ L T G GPR G R W G G+ G + L +G G GG R
Sbjct: 86 RLGSGLGLTTTPGLGPRALCGPRGW--AAGRGEAGATGLRLSVGAATVRGWAGGYFR--- 140
Query: 58 GGGGGRKSREGAACARR---LIRCPSPAPP 84
G GGR E A L+ P P PP
Sbjct: 141 -GDGGRGVSESVAVGTGPDFLLLSPPPPPP 169
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 38.5 bits (88), Expect = 0.006
Identities = 25/57 (43%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 46 GGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVG 102
GG GGEG G GGG REG A P P PP G G G Q GG G
Sbjct: 166 GGGGGGEG---GGAGGGSGEREGGA--------PQPPPPRGWRGKGVRAQQRGGSGG 211
Score = 30.0 bits (66), Expect = 2.3
Identities = 51/207 (24%), Positives = 65/207 (31%), Gaps = 58/207 (28%)
Query: 33 GGQDGGEIIFLHLGGRRGGEGRREAG-----------GGGGRKSREGAACARRLIRCPSP 81
GG GGE GG GG G RE G G G R + G + PS
Sbjct: 166 GGGGGGEG-----GGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSS 220
Query: 82 APPGGAGGLGE---------GRQDGGGEVGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSC 132
+ G G G G GGG + G C + S L F L +
Sbjct: 221 SSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEG--CLQ-------SELIQFHLKKERAAA 271
Query: 133 AGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWGLPRRLPLLAA 192
A A ++ +K+ S R+ P G + + P+ AA
Sbjct: 272 AAAAAQMHAKNG-----------------GGSSSRSSPVSGPPAVCETLAVASASPMAAA 314
Query: 193 -------ARSGALGGMFPTAAPLYSLP 212
A A GG AAP S P
Sbjct: 315 AEGPQQSAEGSASGGGMQAAAPPSSQP 341
Score = 29.3 bits (64), Expect = 3.9
Identities = 33/116 (28%), Positives = 38/116 (32%), Gaps = 17/116 (14%)
Query: 61 GGRKSREGAACARRLIRCPSPA---PPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRLRS 117
GGR+ R L PS PP G GG G G +GGG G +G
Sbjct: 136 GGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGG--EGGGAGGGSG------------ 181
Query: 118 SRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWG 173
R PP R G G R + + S P S P G G G
Sbjct: 182 EREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSG 237
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 38.5 bits (88), Expect = 0.006
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 38/132 (28%)
Query: 46 GGRRGGEGRREA--------GGGGGRKSREGAACARRLIRCPSPAPPG----------GA 87
GG R G+ R+E G G R++R A A R P PG A
Sbjct: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
Query: 88 G--------GLGEGRQDGGGEVGRAG--RRCCRRHRRLRSSR--LWSFKLTPPGRSCAGA 135
G + G + G G G G RR CR RL +SR WS + +P
Sbjct: 125 GPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSP-------- 176
Query: 136 GSRGESKSFPWP 147
G RG S + WP
Sbjct: 177 GLRGTSPAQAWP 188
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 38.5 bits (88), Expect = 0.006
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 47 GRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGR 106
G G G + GG +G C+R C G+GG G GGG G A
Sbjct: 37 GLPSGSGAEDEEAAGGGCCPDGGGCSRCCCCCAGSGGSAGSGGSGGVAGPGGGGAGSAA- 95
Query: 107 RCCRRHRRLRSSRLW 121
C R R R LW
Sbjct: 96 LCLRLGREQRRYSLW 110
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 38.1 bits (87), Expect = 0.008
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 17 GPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLI 76
G A G+ W+RR G+ LG RGG G + G GG + G A +R
Sbjct: 701 GQNAAVGINPWQRR---GKKP------RLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGK 751
Query: 77 RCPSPAPPGGAGGLGEGRQDGGGEVGRAGRR 107
+ + GG G R+ GGG R+G +
Sbjct: 752 KAAASKSHGGGGA---KRRRGGGAKSRSGEK 779
Score = 34.7 bits (78), Expect = 0.093
Identities = 25/94 (26%), Positives = 36/94 (38%)
Query: 46 GGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAG 105
GGRR R + GG + R G ++ R A GG +G+ R G ++ R G
Sbjct: 219 GGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQG 278
Query: 106 RRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRG 139
+ + R + K GR G S G
Sbjct: 279 QNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLG 312
Score = 32.0 bits (71), Expect = 0.61
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 18 PRIAGGVRFWRRRLGGGQDGGEIIFLHLGGR-RGGEGRREAGGGGGRKSRE-GAACARRL 75
P +AG + R+GG + + G GG G +++ GGGG K R+ G A
Sbjct: 531 PAVAGA----KSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAK 586
Query: 76 IRCPSPAPPG---GAGGLGEGRQDGGGE 100
R PG A G+ + R GG+
Sbjct: 587 TRGGGDKQPGWQKAAAGVTKSRSGDGGK 614
Score = 31.6 bits (70), Expect = 0.79
Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 31/152 (20%)
Query: 49 RGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRC 108
RGG G + GG R R G RR + A G G G G+Q ++ ++
Sbjct: 303 RGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRG-GGGQQKAAVVGVKSRKKQ 361
Query: 109 CRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRA 168
RR ++ R + S AGA SRG G R
Sbjct: 362 RRRGKKPRRQK----------ASAAGAKSRGGGDK--------------------KGLRE 391
Query: 169 GPGWGDSHLAPAWGLPRRLPLLAAARSGALGG 200
GD P W PRR A A GG
Sbjct: 392 AKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGG 423
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/89 (24%), Positives = 33/89 (37%)
Query: 15 GTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARR 74
G G + G WRR G + R + RR+ G KSR G + +R+
Sbjct: 488 GGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQ 547
Query: 75 LIRCPSPAPPGGAGGLGEGRQDGGGEVGR 103
+ + GG + + GGG R
Sbjct: 548 RQKAVAAGATSHGGGGNKQSRGGGGNKPR 576
Score = 28.1 bits (61), Expect = 8.7
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 41/144 (28%)
Query: 29 RRLGGGQDGGEIIFLHLGG---RRGGEGRREAGGGGGRKSREGA---------------- 69
+R GGGQ ++ + RRG + RR+ G KSR G
Sbjct: 341 KRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRK 400
Query: 70 -----ACARRLIRCPSPAPPGGAG------GLGEGRQDGGGEVGRAGRRCCRRHRRLRSS 118
RR + P+ P GG G + GG G++ RR ++ R
Sbjct: 401 KPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQK 460
Query: 119 RLWSFKLTPPGRSCAGAGSRGESK 142
+ AGA SRG+ K
Sbjct: 461 -----------AAEAGAESRGDKK 473
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 38.1 bits (87), Expect = 0.008
Identities = 64/228 (28%), Positives = 79/228 (34%), Gaps = 31/228 (13%)
Query: 46 GGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGL-GEGRQDGGGEVGRA 104
GGR G R GGGR SR GA L CP G + G G GG
Sbjct: 155 GGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPP 214
Query: 105 GRRCCRRHRRLRSSRL---WSFKLTPPGRS---------CAGAGSRG----ESKSFPWPF 148
R RH +R S K PG + C G +RG + + F P
Sbjct: 215 PRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPS 274
Query: 149 SPS----TLPLPD-SLPLPPSGGRAGP------GWGDSHLAPAWGLPRRLPLLAAARSGA 197
S S TLP P + P P+ + P G G S L G R + + + A
Sbjct: 275 SHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHA 334
Query: 198 LGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPLGPR 245
L + AP P+ V G R AP +P GPR
Sbjct: 335 LATRRGSRAP---RPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPR 379
Score = 28.9 bits (63), Expect = 5.1
Identities = 51/192 (26%), Positives = 58/192 (30%), Gaps = 35/192 (18%)
Query: 56 EAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRL 115
+A GGGGR S G P PGG GR+ R RR L
Sbjct: 150 DASGGGGRASHSG----------PRAGTPGG---------------GRSSRAGARRKTPL 184
Query: 116 RSSRLWSFKLTP-PGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGD 174
L KL R C G GS P P P L +G RA +
Sbjct: 185 ---SLCPLKLRKGSSRRCQGLGSSWGGSGTPPP--PRALWNRHG---GAAGARAQVRGSE 236
Query: 175 SHLAPAWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPL 234
P LP +LA G +S P S G R + PG P
Sbjct: 237 KRACPGSTLPPS-SVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPA 295
Query: 235 SRAGGTPLGPRG 246
R P RG
Sbjct: 296 PRGSAPPARLRG 307
Score = 28.1 bits (61), Expect = 8.7
Identities = 54/206 (26%), Positives = 63/206 (30%), Gaps = 55/206 (26%)
Query: 50 GGEGRREAGGGGGRKSREGAACAR----RLIRCPSPAPPG---------------GAGGL 90
G G R G GG ++ R A + R + PS A PG G GG
Sbjct: 253 GCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS 312
Query: 91 G----EGRQDGGGEVGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPW 146
G G G G G R R+ R G + P
Sbjct: 313 GLTQLVGSGRGSGVTHSVGTHALATRRGSRAPR-----------------PVGVLRGVPH 355
Query: 147 PFSPSTLPLPDSLPLPPSGGRAGPGWGDSHLAPAWGLPRRLPLLAAARSGALGGMFPTAA 206
F P + P P S P PS GP G RL A R+ AL G+ A
Sbjct: 356 -FRPLSSPAPQSPPRSPSVRAFGPRLGAG----------RLSCPQAPRAAALPGI----A 400
Query: 207 PLYSLPLFVSAGPRCRRSWGFRAPGA 232
L P G RC G P A
Sbjct: 401 VLAPSPAHDWGGQRCEGCGGGSQPFA 426
>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 38.1 bits (87), Expect = 0.008
Identities = 56/199 (28%), Positives = 65/199 (32%), Gaps = 43/199 (21%)
Query: 14 TGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHL------GGRRGGEGRREAGGGG------ 61
+G R G +WR L G E F L G G G RE G GG
Sbjct: 32 SGRSGRFVGNATWWRSALRSLLAGAEARFQGLEEKASSGEGLGWRGGRETGCGGWEPPKP 91
Query: 62 -GRKS----------------REGAACARRLIRCPSPAPPGGAGGLGEGRQ----DGGGE 100
GR+ RE A RRL PSP G G G R+ +
Sbjct: 92 LGRRHWRREGQSSRQRTADFPREEGALGRRLR--PSPRGKSGGGSRGGSRRALVLSSLQD 149
Query: 101 VGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGA-----GSRGESKSFPWPFSP---ST 152
R G RC R RR + R AG G+R E P S
Sbjct: 150 PPRRGHRCLRERRRGSGVAAGTLLRGRGRRREAGTRRPAQGARSEEDPGARRLLPGLRSR 209
Query: 153 LPLPDSLPLPPSGGRAGPG 171
P+P + L P R GPG
Sbjct: 210 RPVPSTCDLHPPHRRHGPG 228
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 38.1 bits (87), Expect = 0.008
Identities = 62/216 (28%), Positives = 79/216 (36%), Gaps = 40/216 (18%)
Query: 47 GRRGGEGR----REAGGGG-GRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGGEV 101
GR G G RE G ++ R G++C R P P G G Q+ GG
Sbjct: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEP-------GRGGKTQEWGGGT 105
Query: 102 GRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPL 161
G + L S L PG++ A +G S SP LP
Sbjct: 106 GTPQSPGPCAPQALAS-------LLGPGKAGCRARLQGGSSGA----SPRRLP------- 147
Query: 162 PPSGGRAGPGWGDSHLAPAWGLPRRLPLLAAARSGALGGMFPTAAPLYSLPLFVSAGPRC 221
GGR GP + PR L A+RSG + G+ P + +P F GP
Sbjct: 148 ---GGR-GPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHD 203
Query: 222 RRSWGFRAPGAPLSR-AGGTPLGPRGRVCARRLRWV 256
S R PG L+R L P +C R RWV
Sbjct: 204 PTS---RGPGRLLTREPPSRKLPPPLPLC--RSRWV 234
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 38.1 bits (87), Expect = 0.008
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 131 SCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSG--GRAGPGWGDSHLAPAWGLPRRLP 188
+ A A + + +P+ P LP ++PL PSG GR +G S L P L
Sbjct: 290 AAAAAAAAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFG-SQLGPGLQLQLNSL 348
Query: 189 LLAAARSGALGG---------MFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGG 239
AAA +G G P+A P +S+ + GP G A GA + AGG
Sbjct: 349 GAAAAAAGTAGAAGTTASLIKSEPSARPSFSIENIIGGGPAAP---GGSAVGAGV--AGG 403
Query: 240 T 240
T
Sbjct: 404 T 404
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 37.7 bits (86), Expect = 0.011
Identities = 56/186 (30%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 63 RKSREGAACARRLIRCPSPAPPGGA-GGLGEGRQ----DGGGEVGRAGRRCCRRHRRLRS 117
RK ++G + +RR R S + PGG GL E + V +
Sbjct: 591 RKRQKGGSASRR--RLSSASSPGGLDAGLVEPPRLLSSPNSASVLKIKTEISEPINFDND 648
Query: 118 SRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHL 177
S +W++ PP R SR ES P+S + P + P P GG G G G H+
Sbjct: 649 SSIWNY---PPNREI----SRNES-----PYSMTKPPSSEHFPSPQGGGGGGGGGGGLHV 696
Query: 178 A-PAWGLPRRLPLLAAARSGALGGMFPTA-APLYSLPLF--VSAGPRCRRSWGFRAPGAP 233
A P L AAAR G A AP+ S PL +SA PR + G
Sbjct: 697 AIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGG 756
Query: 234 LSRAGG 239
AGG
Sbjct: 757 GGGAGG 762
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 37.7 bits (86), Expect = 0.011
Identities = 56/186 (30%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 63 RKSREGAACARRLIRCPSPAPPGGA-GGLGEGRQ----DGGGEVGRAGRRCCRRHRRLRS 117
RK ++G + +RR R S + PGG GL E + V +
Sbjct: 572 RKRQKGGSASRR--RLSSASSPGGLDAGLVEPPRLLSSPNSASVLKIKTEISEPINFDND 629
Query: 118 SRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLPLPDSLPLPPSGGRAGPGWGDSHL 177
S +W++ PP R SR ES P+S + P + P P GG G G G H+
Sbjct: 630 SSIWNY---PPNREI----SRNES-----PYSMTKPPSSEHFPSPQGGGGGGGGGGGLHV 677
Query: 178 A-PAWGLPRRLPLLAAARSGALGGMFPTA-APLYSLPLF--VSAGPRCRRSWGFRAPGAP 233
A P L AAAR G A AP+ S PL +SA PR + G
Sbjct: 678 AIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGG 737
Query: 234 LSRAGG 239
AGG
Sbjct: 738 GGGAGG 743
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.145 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,447,401
Number of Sequences: 37866
Number of extensions: 1079819
Number of successful extensions: 8439
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 6412
Number of HSP's gapped (non-prelim): 1957
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.