Guide to the Human Genome
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Name: C6orf64 Sequence: fasta or formatted (183aa) NCBI GI: 8922867
Description:

hypothetical protein LOC55776

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         26           3
 C cysteine            1.1          2           1
 D aspartate           0.5          1           1
 E glutamate           8.7         16           2
 F phenylalanine       4.9          9           1
 G glycine             7.7         14           1
 H histidine           0.0          0           0
 I isoleucine          1.6          3           1
 K lysine              4.9          9           2
 L leucine            13.1         24           2
 M methionine          1.1          2           1
 N asparagine          1.6          3           1
 P proline             7.7         14           2
 Q glutamine           6.6         12           1
 R arginine            6.0         11           1
 S serine              4.9          9           1
 T threonine           5.5         10           1
 V valine              4.4          8           1
 W tryptophan          3.3          6           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55776 
LOC728940             0.038   PREDICTED: hypothetical protein 
LOC728940             0.038   PREDICTED: hypothetical protein 
LOC728940             0.038   PREDICTED: hypothetical protein 
USP6                  0.026   ubiquitin specific protease 6 
C9orf86               0.023   Rab-like GTP-binding protein 1 isoform 2 
C9orf86               0.023   Rab-like GTP-binding protein 1 isoform 1 
PHRF1                 0.023   PHD and ring finger domains 1 
KANK4                 0.020   ankyrin repeat domain 38 
TNK1                  0.017   tyrosine kinase, non-receptor, 1 
TSEN54                0.017   tRNA splicing endonuclease 54 homolog 
IL16                  0.014   interleukin 16 isoform 2 
C1orf127              0.014   hypothetical protein LOC148345 
ELN                   0.014   elastin isoform e precursor 
ELN                   0.014   elastin isoform d precursor 
ELN                   0.014   elastin isoform c precursor 
ELN                   0.014   elastin isoform b precursor 
ELN                   0.014   elastin isoform a precursor 
LOC100292172          0.014   PREDICTED: hypothetical protein 
FLJ20021              0.014   PREDICTED: hypothetical protein 
LOC100289763          0.014   PREDICTED: hypothetical protein XP_002347867 
FLJ20021              0.014   PREDICTED: hypothetical protein 
LOC100289681          0.014   PREDICTED: hypothetical protein XP_002343623 
FLJ20021              0.014   PREDICTED: hypothetical protein 
RUSC2                 0.014   RUN and SH3 domain containing 2 
RUSC2                 0.014   RUN and SH3 domain containing 2 
SNAP91                0.012   synaptosomal-associated protein, 91kDa homolog 
SH2B3                 0.012   SH2B adaptor protein 3 
LOC100293036          0.012   PREDICTED: hypothetical protein 
LOC100289065          0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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