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Search of human proteins with 20336196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20336196 A-kinase anchor protein 7 isoform beta [Homo
sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] 211 1e-55
gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens] 154 2e-38
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 132 6e-32
gi|223633927 hypothetical protein LOC642597 [Homo sapiens] 45 9e-06
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 33 0.048
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 33 0.048
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 30 0.53
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 30 0.53
gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens] 28 1.2
gi|122937514 unc-13 homolog C [Homo sapiens] 28 2.0
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] 28 2.0
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 27 2.6
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 27 2.6
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 27 2.6
gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 1... 27 2.6
gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo s... 27 2.6
gi|15721939 metastatic lymph node 51 [Homo sapiens] 27 3.4
gi|56119110 family with sequence similarity 13, member A1 isofor... 27 3.4
gi|62865869 family with sequence similarity 13, member A1 isofor... 27 3.4
gi|33300663 polycomb group ring finger 5 [Homo sapiens] 27 3.4
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp... 27 4.5
gi|89363026 calponin-homology and microtubule-associated protein... 27 4.5
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 26 5.9
>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
Length = 104
Score = 211 bits (536), Expect = 1e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV
Sbjct: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
Sbjct: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
>gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens]
Length = 81
Score = 154 bits (388), Expect = 2e-38
Identities = 81/104 (77%), Positives = 81/104 (77%), Gaps = 23/104 (22%)
Query: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
MGQLCCFPFSRDEGKISE KNGGEPDDAELVRLSKRLV
Sbjct: 1 MGQLCCFPFSRDEGKISE-----------------------KNGGEPDDAELVRLSKRLV 37
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
Sbjct: 38 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 81
>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
Length = 326
Score = 132 bits (332), Expect = 6e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 40 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99
GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN
Sbjct: 262 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 321
Query: 100 ENNRK 104
ENNRK
Sbjct: 322 ENNRK 326
>gi|223633927 hypothetical protein LOC642597 [Homo sapiens]
Length = 69
Score = 45.4 bits (106), Expect = 9e-06
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 37 WSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNK 80
++ GEK G EP++ +L SK++V+NA+L+AVQQ +E+Q + +
Sbjct: 3 FAPGEKPGNEPEEVKLQNASKQIVQNAILQAVQQVSQESQRREE 46
>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
R S+ P W SG + GG+ AEL+ L +RL E++ L+A++
Sbjct: 172 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 211
>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
R S+ P W SG + GG+ AEL+ L +RL E++ L+A++
Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209
>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
R S+ P W SG + GG+ AEL+ L +RL E++ L+A++
Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 32 KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90
KD+P E E AE+V ++K +V+ +LE ET+ + KP + K +
Sbjct: 726 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 776
Query: 91 AADQNGNDNENNRK 104
A + G++ E + K
Sbjct: 777 AGGEGGSEEEGSDK 790
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 32 KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90
KD+P E E AE+V ++K +V+ +LE ET+ + KP + K +
Sbjct: 350 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 400
Query: 91 AADQNGNDNENNRK 104
A + G++ E + K
Sbjct: 401 AGGEGGSEEEGSDK 414
>gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens]
Length = 103
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 7 FPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKN------GGEPDDAELV-----RL 55
FP RD K + E+ SA L +S I S G K+ G PD AE++ +
Sbjct: 25 FPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKGSKSPDLLMYQGPPDTAEIIKTLPQKY 84
Query: 56 SKRLVENAVLKAVQQ 70
++LV ++ +Q+
Sbjct: 85 RRKLVSQEEMEFIQR 99
>gi|122937514 unc-13 homolog C [Homo sapiens]
Length = 2214
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 41 EKNGGEPDDAELVRLSKRL---VENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGN 97
++N P+ + KR+ + A L+A ++ + E + K G+ SSV +A +GN
Sbjct: 950 DENQNIPEQPVEITKPKRIRPSFKEAALRAYKKQMAELEEKILAGDSSSVDEKARIVSGN 1009
Query: 98 D 98
D
Sbjct: 1010 D 1010
>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
Length = 1069
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 16 ISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEET 75
+S L S ++ R + PS N G D+ +++ E + K + L +
Sbjct: 17 VSTLNSEDFVLVSRQGDETPS-----TNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDP 71
Query: 76 QNKNKPGEGSSVKTEAADQNGNDNENNR 103
++PGE VK D G+ +N+
Sbjct: 72 PMDDQPGEKELVKRSQLDGEGDGPLSNQ 99
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
+E S+ + + + PS SSG K PD+ L R K E N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593
Query: 67 AVQQYLEETQNKNKPGEGS 85
+V EE +N NK +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
+E S+ + + + PS SSG K PD+ L R K E N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593
Query: 67 AVQQYLEETQNKNKPGEGS 85
+V EE +N NK +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
+E S+ + + + PS SSG K PD+ L R K E N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593
Query: 67 AVQQYLEETQNKNKPGEGS 85
+V EE +N NK +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608
>gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
[Homo sapiens]
Length = 1390
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 48 DDAELVRLSKRLVENAVLKAVQQYLEE 74
DDA+ RL K +E +L + +Y+EE
Sbjct: 1093 DDADYARLVKGRIEKTLLGEISEYIEE 1119
>gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo
sapiens]
Length = 576
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 40 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99
GE+ GE + + +K L+EN +Q ++ N N PGEG VK + D N N +
Sbjct: 420 GERRDGESEH----KCAKMLLEN------RQNYDDNFNVNGPGEG--VKVDPEDTNLNQD 467
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 26.9 bits (58), Expect = 3.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 12 DEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRL----------VE 61
+EG+ SE E +S L+ + D + S+ E+ G E D + +R VE
Sbjct: 101 EEGEYSE-EENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVE 159
Query: 62 NAVLKAVQQYLEETQNKNKP 81
N V K ++L++ +++ P
Sbjct: 160 NKVGKKGPKHLDDDEDRKNP 179
>gi|56119110 family with sequence similarity 13, member A1 isoform a
[Homo sapiens]
Length = 1023
Score = 26.9 bits (58), Expect = 3.4
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 11 RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64
++E +SE+ S L + + + IP++SS ++ + D+A L + RL+ +
Sbjct: 552 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 611
Query: 65 -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100
+QYL++T+ + P S ++ ++ D+E
Sbjct: 612 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 659
>gi|62865869 family with sequence similarity 13, member A1 isoform b
[Homo sapiens]
Length = 697
Score = 26.9 bits (58), Expect = 3.4
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 11 RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64
++E +SE+ S L + + + IP++SS ++ + D+A L + RL+ +
Sbjct: 226 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 285
Query: 65 -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100
+QYL++T+ + P S ++ ++ D+E
Sbjct: 286 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 333
>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
Length = 256
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 46 EPDDAELVRLSKRLVENAVLKAV----QQYLE---ETQNKNKPGEGSSVKTEAA-----D 93
E + E++RL L E + K V +Q LE E KNKP E T A D
Sbjct: 62 ETNPLEMLRLDNTL-EEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKADKPKVD 120
Query: 94 QNGNDNENNR 103
+ G++NE+++
Sbjct: 121 EEGDENEDDK 130
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
QL + R + + +SAV + S ++ W+ G N +P D +LV S +L
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303
Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86
++ V++ V + E+ N+ PG +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327
>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 2 [Homo sapiens]
Length = 224
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 83 EGSSVKTEAADQNGNDNEN 101
E ++V TEAA QNG D EN
Sbjct: 5 EEAAVATEAASQNGEDLEN 23
>gi|89363026 calponin-homology and microtubule-associated protein
[Homo sapiens]
Length = 236
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 43 NGGEPDDA--ELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNG 96
N PDD ++ + + +VE VL ++Q LEE Q + K G GS + D +G
Sbjct: 81 NFSVPDDVMRKIAQCAPGVVE-LVLIPLRQRLEERQRRRKQGAGSLQELAPQDGSG 135
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 26.2 bits (56), Expect = 5.9
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 10 SRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
S D GK + ES L + + GE+ GG D E K L + LKA Q
Sbjct: 4981 SSDSGKKAYTESLHGYTLSNSKGPVQPTAQGEEKGGLRIDME----DKMLPKCTDLKAKQ 5036
Query: 70 QYLEETQNKNK 80
L + N K
Sbjct: 5037 LLLSDILNTKK 5047
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,072
Number of Sequences: 37866
Number of extensions: 151362
Number of successful extensions: 433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 47
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.