BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] (104 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] 211 1e-55 gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens] 154 2e-38 gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 132 6e-32 gi|223633927 hypothetical protein LOC642597 [Homo sapiens] 45 9e-06 gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 33 0.048 gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048 gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 33 0.048 gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 30 0.53 gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 30 0.53 gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens] 28 1.2 gi|122937514 unc-13 homolog C [Homo sapiens] 28 2.0 gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] 28 2.0 gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 27 2.6 gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 27 2.6 gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 27 2.6 gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 1... 27 2.6 gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo s... 27 2.6 gi|15721939 metastatic lymph node 51 [Homo sapiens] 27 3.4 gi|56119110 family with sequence similarity 13, member A1 isofor... 27 3.4 gi|62865869 family with sequence similarity 13, member A1 isofor... 27 3.4 gi|33300663 polycomb group ring finger 5 [Homo sapiens] 27 3.4 gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5 gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5 gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5 gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5 gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 27 4.5 gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 27 4.5 gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp... 27 4.5 gi|89363026 calponin-homology and microtubule-associated protein... 27 4.5 gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 26 5.9 >gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] Length = 104 Score = 211 bits (536), Expect = 1e-55 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV Sbjct: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK Sbjct: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104 >gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens] Length = 81 Score = 154 bits (388), Expect = 2e-38 Identities = 81/104 (77%), Positives = 81/104 (77%), Gaps = 23/104 (22%) Query: 1 MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60 MGQLCCFPFSRDEGKISE KNGGEPDDAELVRLSKRLV Sbjct: 1 MGQLCCFPFSRDEGKISE-----------------------KNGGEPDDAELVRLSKRLV 37 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK Sbjct: 38 ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 81 >gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] Length = 326 Score = 132 bits (332), Expect = 6e-32 Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 40 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN Sbjct: 262 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 321 Query: 100 ENNRK 104 ENNRK Sbjct: 322 ENNRK 326 >gi|223633927 hypothetical protein LOC642597 [Homo sapiens] Length = 69 Score = 45.4 bits (106), Expect = 9e-06 Identities = 19/44 (43%), Positives = 33/44 (75%) Query: 37 WSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNK 80 ++ GEK G EP++ +L SK++V+NA+L+AVQQ +E+Q + + Sbjct: 3 FAPGEKPGNEPEEVKLQNASKQIVQNAILQAVQQVSQESQRREE 46 >gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo sapiens] Length = 297 Score = 33.1 bits (74), Expect = 0.048 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69 R S+ P W SG + GG+ AEL+ L +RL E++ L+A++ Sbjct: 172 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 211 >gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] Length = 295 Score = 33.1 bits (74), Expect = 0.048 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69 R S+ P W SG + GG+ AEL+ L +RL E++ L+A++ Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209 >gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo sapiens] Length = 295 Score = 33.1 bits (74), Expect = 0.048 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69 R S+ P W SG + GG+ AEL+ L +RL E++ L+A++ Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209 >gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 [Homo sapiens] Length = 916 Score = 29.6 bits (65), Expect = 0.53 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 32 KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90 KD+P E E AE+V ++K +V+ +LE ET+ + KP + K + Sbjct: 726 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 776 Query: 91 AADQNGNDNENNRK 104 A + G++ E + K Sbjct: 777 AGGEGGSEEEGSDK 790 >gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 [Homo sapiens] Length = 540 Score = 29.6 bits (65), Expect = 0.53 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 32 KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90 KD+P E E AE+V ++K +V+ +LE ET+ + KP + K + Sbjct: 350 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 400 Query: 91 AADQNGNDNENNRK 104 A + G++ E + K Sbjct: 401 AGGEGGSEEEGSDK 414 >gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens] Length = 103 Score = 28.5 bits (62), Expect = 1.2 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%) Query: 7 FPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKN------GGEPDDAELV-----RL 55 FP RD K + E+ SA L +S I S G K+ G PD AE++ + Sbjct: 25 FPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKGSKSPDLLMYQGPPDTAEIIKTLPQKY 84 Query: 56 SKRLVENAVLKAVQQ 70 ++LV ++ +Q+ Sbjct: 85 RRKLVSQEEMEFIQR 99 >gi|122937514 unc-13 homolog C [Homo sapiens] Length = 2214 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 41 EKNGGEPDDAELVRLSKRL---VENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGN 97 ++N P+ + KR+ + A L+A ++ + E + K G+ SSV +A +GN Sbjct: 950 DENQNIPEQPVEITKPKRIRPSFKEAALRAYKKQMAELEEKILAGDSSSVDEKARIVSGN 1009 Query: 98 D 98 D Sbjct: 1010 D 1010 >gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] Length = 1069 Score = 27.7 bits (60), Expect = 2.0 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 16 ISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEET 75 +S L S ++ R + PS N G D+ +++ E + K + L + Sbjct: 17 VSTLNSEDFVLVSRQGDETPS-----TNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDP 71 Query: 76 QNKNKPGEGSSVKTEAADQNGNDNENNR 103 ++PGE VK D G+ +N+ Sbjct: 72 PMDDQPGEKELVKRSQLDGEGDGPLSNQ 99 >gi|212549782 caspase 8 associated protein 2 [Homo sapiens] Length = 1982 Score = 27.3 bits (59), Expect = 2.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%) Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66 +E S+ + + + PS SSG K PD+ L R K E N V K Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593 Query: 67 AVQQYLEETQNKNKPGEGS 85 +V EE +N NK +GS Sbjct: 1594 SV----EELENSNKNVDGS 1608 >gi|6912288 caspase 8 associated protein 2 [Homo sapiens] Length = 1982 Score = 27.3 bits (59), Expect = 2.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%) Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66 +E S+ + + + PS SSG K PD+ L R K E N V K Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593 Query: 67 AVQQYLEETQNKNKPGEGS 85 +V EE +N NK +GS Sbjct: 1594 SV----EELENSNKNVDGS 1608 >gi|212549532 caspase 8 associated protein 2 [Homo sapiens] Length = 1982 Score = 27.3 bits (59), Expect = 2.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%) Query: 19 LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66 +E S+ + + + PS SSG K PD+ L R K E N V K Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593 Query: 67 AVQQYLEETQNKNKPGEGS 85 +V EE +N NK +GS Sbjct: 1594 SV----EELENSNKNVDGS 1608 >gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo sapiens] Length = 1390 Score = 27.3 bits (59), Expect = 2.6 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 48 DDAELVRLSKRLVENAVLKAVQQYLEE 74 DDA+ RL K +E +L + +Y+EE Sbjct: 1093 DDADYARLVKGRIEKTLLGEISEYIEE 1119 >gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo sapiens] Length = 576 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%) Query: 40 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99 GE+ GE + + +K L+EN +Q ++ N N PGEG VK + D N N + Sbjct: 420 GERRDGESEH----KCAKMLLEN------RQNYDDNFNVNGPGEG--VKVDPEDTNLNQD 467 >gi|15721939 metastatic lymph node 51 [Homo sapiens] Length = 703 Score = 26.9 bits (58), Expect = 3.4 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%) Query: 12 DEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRL----------VE 61 +EG+ SE E +S L+ + D + S+ E+ G E D + +R VE Sbjct: 101 EEGEYSE-EENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVE 159 Query: 62 NAVLKAVQQYLEETQNKNKP 81 N V K ++L++ +++ P Sbjct: 160 NKVGKKGPKHLDDDEDRKNP 179 >gi|56119110 family with sequence similarity 13, member A1 isoform a [Homo sapiens] Length = 1023 Score = 26.9 bits (58), Expect = 3.4 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%) Query: 11 RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64 ++E +SE+ S L + + + IP++SS ++ + D+A L + RL+ + Sbjct: 552 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 611 Query: 65 -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100 +QYL++T+ + P S ++ ++ D+E Sbjct: 612 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 659 >gi|62865869 family with sequence similarity 13, member A1 isoform b [Homo sapiens] Length = 697 Score = 26.9 bits (58), Expect = 3.4 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%) Query: 11 RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64 ++E +SE+ S L + + + IP++SS ++ + D+A L + RL+ + Sbjct: 226 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 285 Query: 65 -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100 +QYL++T+ + P S ++ ++ D+E Sbjct: 286 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 333 >gi|33300663 polycomb group ring finger 5 [Homo sapiens] Length = 256 Score = 26.9 bits (58), Expect = 3.4 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 13/70 (18%) Query: 46 EPDDAELVRLSKRLVENAVLKAV----QQYLE---ETQNKNKPGEGSSVKTEAA-----D 93 E + E++RL L E + K V +Q LE E KNKP E T A D Sbjct: 62 ETNPLEMLRLDNTL-EEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKADKPKVD 120 Query: 94 QNGNDNENNR 103 + G++NE+++ Sbjct: 121 EEGDENEDDK 130 >gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] Length = 2852 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255 >gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] Length = 2924 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327 >gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] Length = 2852 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255 >gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] Length = 2924 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327 >gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] Length = 2852 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255 >gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] Length = 2924 Score = 26.6 bits (57), Expect = 4.5 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 3 QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60 QL + R + + +SAV + S ++ W+ G N +P D +LV S +L Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303 Query: 61 ENAVLKAVQQYLEETQNKNKPGEGSS 86 ++ V++ V + E+ N+ PG +S Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327 >gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 [Homo sapiens] Length = 224 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 83 EGSSVKTEAADQNGNDNEN 101 E ++V TEAA QNG D EN Sbjct: 5 EEAAVATEAASQNGEDLEN 23 >gi|89363026 calponin-homology and microtubule-associated protein [Homo sapiens] Length = 236 Score = 26.6 bits (57), Expect = 4.5 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 43 NGGEPDDA--ELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNG 96 N PDD ++ + + +VE VL ++Q LEE Q + K G GS + D +G Sbjct: 81 NFSVPDDVMRKIAQCAPGVVE-LVLIPLRQRLEERQRRRKQGAGSLQELAPQDGSG 135 >gi|226246554 hypothetical protein LOC643677 [Homo sapiens] Length = 7081 Score = 26.2 bits (56), Expect = 5.9 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 10 SRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69 S D GK + ES L + + GE+ GG D E K L + LKA Q Sbjct: 4981 SSDSGKKAYTESLHGYTLSNSKGPVQPTAQGEEKGGLRIDME----DKMLPKCTDLKAKQ 5036 Query: 70 QYLEETQNKNK 80 L + N K Sbjct: 5037 LLLSDILNTKK 5047 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.303 0.124 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,031,072 Number of Sequences: 37866 Number of extensions: 151362 Number of successful extensions: 433 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 420 Number of HSP's gapped (non-prelim): 47 length of query: 104 length of database: 18,247,518 effective HSP length: 75 effective length of query: 29 effective length of database: 15,407,568 effective search space: 446819472 effective search space used: 446819472 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.