Guide to the Human Genome
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Search of human proteins with 20336196

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20336196 A-kinase anchor protein 7 isoform beta [Homo
sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]     211   1e-55
gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens]     154   2e-38
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]     132   6e-32
gi|223633927 hypothetical protein LOC642597 [Homo sapiens]             45   9e-06
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ...    33   0.048
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ...    33   0.048
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    30   0.53 
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    30   0.53 
gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens]         28   1.2  
gi|122937514 unc-13 homolog C [Homo sapiens]                           28   2.0  
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]            28   2.0  
gi|212549782 caspase 8 associated protein 2 [Homo sapiens]             27   2.6  
gi|6912288 caspase 8 associated protein 2 [Homo sapiens]               27   2.6  
gi|212549532 caspase 8 associated protein 2 [Homo sapiens]             27   2.6  
gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 1...    27   2.6  
gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo s...    27   2.6  
gi|15721939 metastatic lymph node 51 [Homo sapiens]                    27   3.4  
gi|56119110 family with sequence similarity 13, member A1 isofor...    27   3.4  
gi|62865869 family with sequence similarity 13, member A1 isofor...    27   3.4  
gi|33300663 polycomb group ring finger 5 [Homo sapiens]                27   3.4  
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              27   4.5  
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              27   4.5  
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]              27   4.5  
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]              27   4.5  
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]              27   4.5  
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]              27   4.5  
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...    27   4.5  
gi|89363026 calponin-homology and microtubule-associated protein...    27   4.5  
gi|226246554 hypothetical protein LOC643677 [Homo sapiens]             26   5.9  

>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
          Length = 104

 Score =  211 bits (536), Expect = 1e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
           MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV
Sbjct: 1   MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
           ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
Sbjct: 61  ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104


>gi|4757738 A-kinase anchor protein 7 isoform alpha [Homo sapiens]
          Length = 81

 Score =  154 bits (388), Expect = 2e-38
 Identities = 81/104 (77%), Positives = 81/104 (77%), Gaps = 23/104 (22%)

Query: 1   MGQLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLV 60
           MGQLCCFPFSRDEGKISE                       KNGGEPDDAELVRLSKRLV
Sbjct: 1   MGQLCCFPFSRDEGKISE-----------------------KNGGEPDDAELVRLSKRLV 37

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 104
           ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
Sbjct: 38  ENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK 81


>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
          Length = 326

 Score =  132 bits (332), Expect = 6e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 40  GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99
           GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN
Sbjct: 262 GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 321

Query: 100 ENNRK 104
           ENNRK
Sbjct: 322 ENNRK 326


>gi|223633927 hypothetical protein LOC642597 [Homo sapiens]
          Length = 69

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 19/44 (43%), Positives = 33/44 (75%)

Query: 37 WSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNK 80
          ++ GEK G EP++ +L   SK++V+NA+L+AVQQ  +E+Q + +
Sbjct: 3  FAPGEKPGNEPEEVKLQNASKQIVQNAILQAVQQVSQESQRREE 46


>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
           sapiens]
          Length = 297

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 29  RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
           R S+  P W SG + GG+   AEL+ L +RL E++ L+A++
Sbjct: 172 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 211


>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 29  RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
           R S+  P W SG + GG+   AEL+ L +RL E++ L+A++
Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209


>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
           sapiens]
          Length = 295

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 29  RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
           R S+  P W SG + GG+   AEL+ L +RL E++ L+A++
Sbjct: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 32  KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90
           KD+P     E    E   AE+V ++K         +V+ +LE ET+ + KP +    K +
Sbjct: 726 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 776

Query: 91  AADQNGNDNENNRK 104
           A  + G++ E + K
Sbjct: 777 AGGEGGSEEEGSDK 790


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 32  KDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLE-ETQNKNKPGEGSSVKTE 90
           KD+P     E    E   AE+V ++K         +V+ +LE ET+ + KP +    K +
Sbjct: 350 KDVPEKKKAESPVKEEAVAEVVTITK---------SVKVHLEKETKEEGKPLQQEKEKEK 400

Query: 91  AADQNGNDNENNRK 104
           A  + G++ E + K
Sbjct: 401 AGGEGGSEEEGSDK 414


>gi|15150811 mitochondrial ribosomal protein S36 [Homo sapiens]
          Length = 103

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 7  FPFSRDEGKISELESSSSAVLQRYSKDIPSWSSGEKN------GGEPDDAELV-----RL 55
          FP  RD  K +  E+  SA L  +S  I   S G K+       G PD AE++     + 
Sbjct: 25 FPDRRDNPKPNVSEALRSAGLPSHSSVISQHSKGSKSPDLLMYQGPPDTAEIIKTLPQKY 84

Query: 56 SKRLVENAVLKAVQQ 70
           ++LV    ++ +Q+
Sbjct: 85 RRKLVSQEEMEFIQR 99


>gi|122937514 unc-13 homolog C [Homo sapiens]
          Length = 2214

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 41   EKNGGEPDDAELVRLSKRL---VENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGN 97
            ++N   P+    +   KR+    + A L+A ++ + E + K   G+ SSV  +A   +GN
Sbjct: 950  DENQNIPEQPVEITKPKRIRPSFKEAALRAYKKQMAELEEKILAGDSSSVDEKARIVSGN 1009

Query: 98   D 98
            D
Sbjct: 1010 D 1010


>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
          Length = 1069

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 16  ISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEET 75
           +S L S    ++ R   + PS      N G  D+   +++     E  + K +   L + 
Sbjct: 17  VSTLNSEDFVLVSRQGDETPS-----TNNGSDDEKTGLKIVGNGSEQQLQKELADVLMDP 71

Query: 76  QNKNKPGEGSSVKTEAADQNGNDNENNR 103
              ++PGE   VK    D  G+   +N+
Sbjct: 72  PMDDQPGEKELVKRSQLDGEGDGPLSNQ 99


>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 19   LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
            +E S+   + +  +  PS SSG K    PD+    L R  K   E          N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593

Query: 67   AVQQYLEETQNKNKPGEGS 85
            +V    EE +N NK  +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608


>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 19   LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
            +E S+   + +  +  PS SSG K    PD+    L R  K   E          N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593

Query: 67   AVQQYLEETQNKNKPGEGS 85
            +V    EE +N NK  +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608


>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 19   LESSSSAVLQRYSKDIPSWSSGEKNGGEPDD--AELVRLSKRLVE----------NAVLK 66
            +E S+   + +  +  PS SSG K    PD+    L R  K   E          N V K
Sbjct: 1534 MEKSNDHFIVKIRRATPSTSSGLKQSMMPDELLTSLPRHGKEADEGPEKEYISCQNTVFK 1593

Query: 67   AVQQYLEETQNKNKPGEGS 85
            +V    EE +N NK  +GS
Sbjct: 1594 SV----EELENSNKNVDGS 1608


>gi|39725938 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            [Homo sapiens]
          Length = 1390

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 48   DDAELVRLSKRLVENAVLKAVQQYLEE 74
            DDA+  RL K  +E  +L  + +Y+EE
Sbjct: 1093 DDADYARLVKGRIEKTLLGEISEYIEE 1119


>gi|68077168 DnaJ homology subfamily A member 5 isoform 1 [Homo
           sapiens]
          Length = 576

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%)

Query: 40  GEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDN 99
           GE+  GE +     + +K L+EN      +Q  ++  N N PGEG  VK +  D N N +
Sbjct: 420 GERRDGESEH----KCAKMLLEN------RQNYDDNFNVNGPGEG--VKVDPEDTNLNQD 467


>gi|15721939 metastatic lymph node 51 [Homo sapiens]
          Length = 703

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 12  DEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRL----------VE 61
           +EG+ SE E +S   L+  + D  + S+ E+ G E  D +     +R           VE
Sbjct: 101 EEGEYSE-EENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVE 159

Query: 62  NAVLKAVQQYLEETQNKNKP 81
           N V K   ++L++ +++  P
Sbjct: 160 NKVGKKGPKHLDDDEDRKNP 179


>gi|56119110 family with sequence similarity 13, member A1 isoform a
           [Homo sapiens]
          Length = 1023

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 11  RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64
           ++E  +SE+  S    L   + + + IP++SS ++   + D+A L   + RL+   +   
Sbjct: 552 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 611

Query: 65  -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100
                          +QYL++T+   + P   S ++  ++     D+E
Sbjct: 612 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 659


>gi|62865869 family with sequence similarity 13, member A1 isoform b
           [Homo sapiens]
          Length = 697

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 11  RDEGKISELESSSSAVL---QRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAV--- 64
           ++E  +SE+  S    L   + + + IP++SS ++   + D+A L   + RL+   +   
Sbjct: 226 QEESFVSEVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDED 285

Query: 65  -----------LKAVQQYLEETQ-NKNKPGEGSSVKTEAADQNGNDNE 100
                          +QYL++T+   + P   S ++  ++     D+E
Sbjct: 286 SDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDE 333


>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
          Length = 256

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 46  EPDDAELVRLSKRLVENAVLKAV----QQYLE---ETQNKNKPGEGSSVKTEAA-----D 93
           E +  E++RL   L E  + K V    +Q LE   E   KNKP E     T  A     D
Sbjct: 62  ETNPLEMLRLDNTL-EEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKADKPKVD 120

Query: 94  QNGNDNENNR 103
           + G++NE+++
Sbjct: 121 EEGDENEDDK 130


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327


>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255


>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327


>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 173 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 231

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 232 DD-VVEFVHSWQEQAPNQ-PPGPTTS 255


>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 3   QLCCFPFSRDEGKISELESSSSAVLQRYSKDIPSWSSG--EKNGGEPDDAELVRLSKRLV 60
           QL  +   R +   +     +SAV  + S ++  W+ G    N  +P D +LV  S +L 
Sbjct: 245 QLAGYVIVRHQSAFTLAWDGASAVYIKMSPELLGWTHGLCGNNNADPKD-DLVTSSGKLT 303

Query: 61  ENAVLKAVQQYLEETQNKNKPGEGSS 86
           ++ V++ V  + E+  N+  PG  +S
Sbjct: 304 DD-VVEFVHSWQEQAPNQ-PPGPTTS 327


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 83  EGSSVKTEAADQNGNDNEN 101
           E ++V TEAA QNG D EN
Sbjct: 5   EEAAVATEAASQNGEDLEN 23


>gi|89363026 calponin-homology and microtubule-associated protein
           [Homo sapiens]
          Length = 236

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 43  NGGEPDDA--ELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNG 96
           N   PDD   ++ + +  +VE  VL  ++Q LEE Q + K G GS  +    D +G
Sbjct: 81  NFSVPDDVMRKIAQCAPGVVE-LVLIPLRQRLEERQRRRKQGAGSLQELAPQDGSG 135


>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
          Length = 7081

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 10   SRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
            S D GK +  ES     L      +   + GE+ GG   D E     K L +   LKA Q
Sbjct: 4981 SSDSGKKAYTESLHGYTLSNSKGPVQPTAQGEEKGGLRIDME----DKMLPKCTDLKAKQ 5036

Query: 70   QYLEETQNKNK 80
              L +  N  K
Sbjct: 5037 LLLSDILNTKK 5047


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.303    0.124    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,072
Number of Sequences: 37866
Number of extensions: 151362
Number of successful extensions: 433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 47
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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