Guide to the Human Genome
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Name: SPEF1 Sequence: fasta or formatted (236aa) NCBI GI: 89363026
Description:

calponin-homology and microtubule-associated protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         15           1
 C cysteine            0.4          1           1
 D aspartate           5.1         12           2
 E glutamate           6.8         16           2
 F phenylalanine       2.1          5           1
 G glycine             5.9         14           3
 H histidine           1.7          4           1
 I isoleucine          2.5          6           1
 K lysine              5.5         13           1
 L leucine            12.3         29           2
 M methionine          2.5          6           1
 N asparagine          3.8          9           1
 P proline             6.8         16           2
 Q glutamine           9.3         22           2
 R arginine            9.7         23           3
 S serine              6.4         15           2
 T threonine           0.4          1           1
 V valine              8.9         21           2
 W tryptophan          1.3          3           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calponin-homology and microtubule-associated protein... 
SPATA4                0.097   spermatogenesis associated 4 
SMARCD3               0.022   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.022   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.020   SWI/SNF related, matrix associated, actin dependent ...
TARBP1                0.020   TAR RNA binding protein 1 
SMARCA2               0.018   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.018   SWI/SNF-related matrix-associated actin-dependent re...
BSN                   0.018   bassoon protein 
SFPQ                  0.018   splicing factor proline/glutamine rich (polypyrimidin...
ProSAPiP1             0.016   ProSAPiP1 protein 
PCNT                  0.016   pericentrin 
CEP250                0.016   centrosomal protein 2 
CENPE                 0.016   centromere protein E 
LOC283767             0.013   golgi autoantigen, golgin subfamily a-like 
LOC651986             0.013   PREDICTED: similar to forkhead box L2 
LOC651986             0.013   PREDICTED: similar to forkhead box L2 
LOC100288524          0.013   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.013   PREDICTED: similar to forkhead box L2 
ITIH5L                0.011   inter-alpha (globulin) inhibitor H5-like 
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
EHMT1                 0.011   euchromatic histone-lysine N-methyltransferase 1 is...
EHMT1                 0.011   euchromatic histone-lysine N-methyltransferase 1 is...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
YEATS4                0.011   glioma-amplified sequence-41 
MAVS                  0.011   virus-induced signaling adapter 
MKL2                  0.011   megakaryoblastic leukemia 2 protein 
MARVELD3              0.011   MARVEL domain containing 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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