Guide to the Human Genome
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Name: FAM13A Sequence: fasta or formatted (697aa) NCBI GI: 62865869
Description:

family with sequence similarity 13, member A1 isoform b

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [1023aa] family with sequence similarity 13, member A1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         32           2
 C cysteine            0.9          6           1
 D aspartate           7.7         54           2
 E glutamate          10.6         74           4
 F phenylalanine       3.4         24           2
 G glycine             3.7         26           2
 H histidine           2.4         17           1
 I isoleucine          4.0         28           2
 K lysine              8.3         58           3
 L leucine             8.2         57           2
 M methionine          2.2         15           1
 N asparagine          3.9         27           2
 P proline             5.3         37           2
 Q glutamine           6.0         42           2
 R arginine            7.6         53           3
 S serine             11.2         78           3
 T threonine           4.3         30           1
 V valine              3.3         23           1
 W tryptophan          0.6          4           1
 Y tyrosine            1.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 13, member A1 isofor... 
FAM13A                0.986   family with sequence similarity 13, member A1 isofor...
FAM13B                0.344   hypothetical protein LOC51306 isoform 1 
FAM13B                0.304   hypothetical protein LOC51306 isoform 2 
FAM13B                0.295   hypothetical protein LOC51306 isoform 3 
FAM13C                0.192   hypothetical protein LOC220965 isoform 1 
FAM13C                0.192   hypothetical protein LOC220965 isoform 3 
FAM13C                0.087   hypothetical protein LOC220965 isoform 2 
NEXN                  0.020   nexilin (F actin binding protein) 
RB1CC1                0.017   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.017   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.015   myosin, heavy polypeptide 10, non-muscle 
OPTN                  0.015   optineurin 
OPTN                  0.015   optineurin 
OPTN                  0.015   optineurin 
OPTN                  0.015   optineurin 
IWS1                  0.015   IWS1 homolog 
MYH9                  0.015   myosin, heavy polypeptide 9, non-muscle 
MYO18A                0.015   myosin 18A isoform b 
MYO18A                0.015   myosin 18A isoform a 
TCHH                  0.015   trichohyalin 
PPIG                  0.015   peptidylprolyl isomerase G 
HMMR                  0.014   hyaluronan-mediated motility receptor isoform c [Ho...
MPHOSPH8              0.014   M-phase phosphoprotein 8 
HMMR                  0.014   hyaluronan-mediated motility receptor isoform a [Ho...
CLIP1                 0.013   restin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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