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Search of human proteins with 203098334
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|203098334 Myc-binding protein-associated protein [Homo
sapiens]
(984 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|203098334 Myc-binding protein-associated protein [Homo sapiens] 1987 0.0
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 40 0.008
gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo s... 37 0.070
gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo s... 37 0.070
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 35 0.26
gi|104526627 triadin [Homo sapiens] 35 0.26
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 35 0.35
gi|51317358 HGFL protein isoform 1 [Homo sapiens] 35 0.45
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 34 0.77
gi|157738629 kinesin family member 13A isoform d [Homo sapiens] 34 0.77
gi|157738627 kinesin family member 13A isoform c [Homo sapiens] 34 0.77
gi|157738625 kinesin family member 13A isoform b [Homo sapiens] 34 0.77
gi|115529449 upstream binding transcription factor, RNA polymera... 34 0.77
gi|115529451 upstream binding transcription factor, RNA polymera... 34 0.77
gi|7657671 upstream binding transcription factor, RNA polymerase... 34 0.77
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 34 0.77
gi|83921609 hypothetical protein LOC127254 [Homo sapiens] 34 0.77
gi|122937227 U2-associated SR140 protein [Homo sapiens] 33 1.0
gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like... 33 1.3
gi|4557509 cylicin 2 [Homo sapiens] 33 1.3
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 33 1.3
gi|51243032 oxysterol-binding protein-like protein 8 isoform b [... 33 1.3
gi|18079218 oxysterol-binding protein-like protein 8 isoform a [... 33 1.3
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 33 1.7
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 33 1.7
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 33 1.7
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 32 2.2
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 32 2.2
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 32 2.2
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 32 2.2
>gi|203098334 Myc-binding protein-associated protein [Homo sapiens]
Length = 984
Score = 1987 bits (5148), Expect = 0.0
Identities = 984/984 (100%), Positives = 984/984 (100%)
Query: 1 MRAPARGTGCCGRSGGRWLAGAAQPRCLWAGGAGQRFMVPGGTMKSLKKDSRLRITPTRL 60
MRAPARGTGCCGRSGGRWLAGAAQPRCLWAGGAGQRFMVPGGTMKSLKKDSRLRITPTRL
Sbjct: 1 MRAPARGTGCCGRSGGRWLAGAAQPRCLWAGGAGQRFMVPGGTMKSLKKDSRLRITPTRL 60
Query: 61 LEASENVKEKKRAKGPEQPTPTIQEEPEPVSNVLQGDDILALAIKKEDLKEQHIPRLTEK 120
LEASENVKEKKRAKGPEQPTPTIQEEPEPVSNVLQGDDILALAIKKEDLKEQHIPRLTEK
Sbjct: 61 LEASENVKEKKRAKGPEQPTPTIQEEPEPVSNVLQGDDILALAIKKEDLKEQHIPRLTEK 120
Query: 121 EDKRVITQKFIIRKLKPMDPRRKVCHLVARPANPDEATKPLDYSGPGDSFDGSDQILPHH 180
EDKRVITQKFIIRKLKPMDPRRKVCHLVARPANPDEATKPLDYSGPGDSFDGSDQILPHH
Sbjct: 121 EDKRVITQKFIIRKLKPMDPRRKVCHLVARPANPDEATKPLDYSGPGDSFDGSDQILPHH 180
Query: 181 ILGSLQDFKRIALARGNTQLAERIPTSPCLMTLISAEGESKQKAPKEEKRPPWAPPPQHN 240
ILGSLQDFKRIALARGNTQLAERIPTSPCLMTLISAEGESKQKAPKEEKRPPWAPPPQHN
Sbjct: 181 ILGSLQDFKRIALARGNTQLAERIPTSPCLMTLISAEGESKQKAPKEEKRPPWAPPPQHN 240
Query: 241 FLKNWQRNTALRKKQQEALSEHLKKPVSELLMHTGETYRRIQEERELIDCTLPTRRDRKS 300
FLKNWQRNTALRKKQQEALSEHLKKPVSELLMHTGETYRRIQEERELIDCTLPTRRDRKS
Sbjct: 241 FLKNWQRNTALRKKQQEALSEHLKKPVSELLMHTGETYRRIQEERELIDCTLPTRRDRKS 300
Query: 301 WENSGFWSRLEYLGDEMTGLVMTKTKTQRGLMEPITHIRKPHSIRVETGLPAQRDASYRY 360
WENSGFWSRLEYLGDEMTGLVMTKTKTQRGLMEPITHIRKPHSIRVETGLPAQRDASYRY
Sbjct: 301 WENSGFWSRLEYLGDEMTGLVMTKTKTQRGLMEPITHIRKPHSIRVETGLPAQRDASYRY 360
Query: 361 TWDRSLFLIYRRKELQRIMEELDFSQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSS 420
TWDRSLFLIYRRKELQRIMEELDFSQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSS
Sbjct: 361 TWDRSLFLIYRRKELQRIMEELDFSQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSS 420
Query: 421 EDTAYLGTLASSSDVSMPILGPSLLFCGKPACWIRGSNPQDKRQVGIAAHLTFETLEGEK 480
EDTAYLGTLASSSDVSMPILGPSLLFCGKPACWIRGSNPQDKRQVGIAAHLTFETLEGEK
Sbjct: 421 EDTAYLGTLASSSDVSMPILGPSLLFCGKPACWIRGSNPQDKRQVGIAAHLTFETLEGEK 480
Query: 481 TSSELTVVNNGTVAIWYDWRRQHQPDTFQDLKKNRMQRFYFDNREGVILPGEIKTFTFFF 540
TSSELTVVNNGTVAIWYDWRRQHQPDTFQDLKKNRMQRFYFDNREGVILPGEIKTFTFFF
Sbjct: 481 TSSELTVVNNGTVAIWYDWRRQHQPDTFQDLKKNRMQRFYFDNREGVILPGEIKTFTFFF 540
Query: 541 KSLTAGVFREFWEFRTHPTLLGGAILQVNLHAVSLTQDVFEDERKVLESKLTAHEAVTVV 600
KSLTAGVFREFWEFRTHPTLLGGAILQVNLHAVSLTQDVFEDERKVLESKLTAHEAVTVV
Sbjct: 541 KSLTAGVFREFWEFRTHPTLLGGAILQVNLHAVSLTQDVFEDERKVLESKLTAHEAVTVV 600
Query: 601 REVLQELLMGVLTPERTPSPVDAYLTEEDLFRHRNPPLHYEHQVVQSLHQLWRQYMTLPA 660
REVLQELLMGVLTPERTPSPVDAYLTEEDLFRHRNPPLHYEHQVVQSLHQLWRQYMTLPA
Sbjct: 601 REVLQELLMGVLTPERTPSPVDAYLTEEDLFRHRNPPLHYEHQVVQSLHQLWRQYMTLPA 660
Query: 661 KAEEARPGDKEHVSPIATEKASVNAELLPRFRSPISETQVPRPENEALRESGSQKARVGT 720
KAEEARPGDKEHVSPIATEKASVNAELLPRFRSPISETQVPRPENEALRESGSQKARVGT
Sbjct: 661 KAEEARPGDKEHVSPIATEKASVNAELLPRFRSPISETQVPRPENEALRESGSQKARVGT 720
Query: 721 KSPQRKSIMEEILVEESPDVDSTKSPWEPDGLPLLEWNLCLEDFRKAVMVLPDENHREDA 780
KSPQRKSIMEEILVEESPDVDSTKSPWEPDGLPLLEWNLCLEDFRKAVMVLPDENHREDA
Sbjct: 721 KSPQRKSIMEEILVEESPDVDSTKSPWEPDGLPLLEWNLCLEDFRKAVMVLPDENHREDA 780
Query: 781 LMRLNKAALELCQKPRPLQSNLLHQMCLQLWRDVIDSLVGHSMWLRSVLGLPEKETIYLN 840
LMRLNKAALELCQKPRPLQSNLLHQMCLQLWRDVIDSLVGHSMWLRSVLGLPEKETIYLN
Sbjct: 781 LMRLNKAALELCQKPRPLQSNLLHQMCLQLWRDVIDSLVGHSMWLRSVLGLPEKETIYLN 840
Query: 841 VPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSK 900
VPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSK
Sbjct: 841 VPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSK 900
Query: 901 KHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSLHSEVRGLLDTLV 960
KHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSLHSEVRGLLDTLV
Sbjct: 901 KHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSLHSEVRGLLDTLV 960
Query: 961 TDLMVLADELSPIKNVEEALRLCR 984
TDLMVLADELSPIKNVEEALRLCR
Sbjct: 961 TDLMVLADELSPIKNVEEALRLCR 984
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 40.4 bits (93), Expect = 0.008
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 798 LQSNLLHQMCLQLWRDVIDSLVGHSMWLR---SVLGLPEKETIYLNVPEEQDQKSPPIME 854
L+ N H + L+ ++ + ++ +R S+L LPEKE +E+D+KS
Sbjct: 757 LEDNKEHSFEVSLFAELFNEMLQRDFGVRIYKSLLSLPEKED-----KKEKDKKS----- 806
Query: 855 VKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSA 914
K K KEER E K K +DK + + + + +K +KDD + +
Sbjct: 807 -KKDERKDKKEERDDETDEPKPKRRKSGDDKDKKEDRDERKKEDKRKDDSKDDDETEEDN 865
Query: 915 SQDRF 919
+QD +
Sbjct: 866 NQDEY 870
>gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo
sapiens]
Length = 471
Score = 37.4 bits (85), Expect = 0.070
Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 41/287 (14%)
Query: 695 ISETQVPRPENEALRESGSQKARVGTKSPQRKSIMEEILVEESPDVD-STKSPWEPDGLP 753
++E P P E L E ++ + ++E+I+ E + +V+ S +S E G
Sbjct: 176 LAEIVKPSPSLELLVEESPEEVV--------EDVIEDIVEEVTEEVEGSLESEVEESG-- 225
Query: 754 LLEWNLCLEDFRKAVMVLPDENHREDALMRLNKAALELCQKPRPLQSNLLHQMCLQLWRD 813
E L + ++ +P + E A +RL + LC P + + H+ W +
Sbjct: 226 --ESELSVISGPSTILQMPRASAEELAKLRL-RIDPRLCPSPGTVLFSTAHKP----WAE 278
Query: 814 VIDSLVGHSMWLRSVLGLPE--KETIYLNVPEEQDQKSPPIME-VKVPVG-KAGKEERKG 869
VI LR ++ L + + EE+ P ++ V P+ K GK E+
Sbjct: 279 VIPCSYEMQHSLRDLVPLKAFLLAGTTVTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDK 338
Query: 870 AAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSASQDRFSLEDPTPDII 929
+EK + G +KE K K+L K+ P K QD P ++
Sbjct: 339 KGKEKDRTGKGEKEPAKEWKVLKKKKEPP-------------KELRQD-----PPILQVL 380
Query: 930 LSSQEPIDPLVMGKYTQSLHSEVRGLLDTLVTDLMVLADELSPIKNV 976
++PL+ G+ S G++ TL +D + LA + IK V
Sbjct: 381 GRGLVILEPLLAGEPLVSTVCNF-GVVRTLTSDRLTLARDSKKIKKV 426
>gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo
sapiens]
Length = 656
Score = 37.4 bits (85), Expect = 0.070
Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 41/287 (14%)
Query: 695 ISETQVPRPENEALRESGSQKARVGTKSPQRKSIMEEILVEESPDVD-STKSPWEPDGLP 753
++E P P E L E ++ + ++E+I+ E + +V+ S +S E G
Sbjct: 361 LAEIVKPSPSLELLVEESPEEVV--------EDVIEDIVEEVTEEVEGSLESEVEESG-- 410
Query: 754 LLEWNLCLEDFRKAVMVLPDENHREDALMRLNKAALELCQKPRPLQSNLLHQMCLQLWRD 813
E L + ++ +P + E A +RL + LC P + + H+ W +
Sbjct: 411 --ESELSVISGPSTILQMPRASAEELAKLRL-RIDPRLCPSPGTVLFSTAHKP----WAE 463
Query: 814 VIDSLVGHSMWLRSVLGLPE--KETIYLNVPEEQDQKSPPIME-VKVPVG-KAGKEERKG 869
VI LR ++ L + + EE+ P ++ V P+ K GK E+
Sbjct: 464 VIPCSYEMQHSLRDLVPLKAFLLAGTTVTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDK 523
Query: 870 AAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSASQDRFSLEDPTPDII 929
+EK + G +KE K K+L K+ P K QD P ++
Sbjct: 524 KGKEKDRTGKGEKEPAKEWKVLKKKKEPP-------------KELRQD-----PPILQVL 565
Query: 930 LSSQEPIDPLVMGKYTQSLHSEVRGLLDTLVTDLMVLADELSPIKNV 976
++PL+ G+ S G++ TL +D + LA + IK V
Sbjct: 566 GRGLVILEPLLAGEPLVSTVCNF-GVVRTLTSDRLTLARDSKKIKKV 611
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 35.4 bits (80), Expect = 0.26
Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 22/248 (8%)
Query: 699 QVPRPENEAL----RESGSQKARVGTKSPQRKSIMEEILVEESPDVDSTKSPWEPDGLPL 754
QVP P + R + + K KS+ +E EE+P+V +P +
Sbjct: 524 QVPTPVVKQTKLKQRADSRESLKPAAKPLPSKSVRKESK-EETPEVTKVNHVEKPPKV-- 580
Query: 755 LEWNLCLEDFRKAVMVLPDENHREDALMRLNKAALELCQKPRPLQSNLLHQMCLQLW-RD 813
+ ++ VMV D+ + + + + + ++P P+++ + + + +
Sbjct: 581 --------ESKEKVMVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKA 632
Query: 814 VIDSLVGHSMWLRSVLGLPEKETIYLNVPEEQD------QKSPPIMEVKVPVGKAGKEER 867
+ V ++ EKE V +++D ++ P EVK V K K+E
Sbjct: 633 AKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEE 692
Query: 868 KGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSASQDRFSLEDPTPD 927
K +++ + KE KK K K++ +K K+ KK+ K A + L +
Sbjct: 693 KKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKP 752
Query: 928 IILSSQEP 935
L + P
Sbjct: 753 AALKPKVP 760
Score = 33.9 bits (76), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 842 PEEQDQKSPPIMEVKVPVGKAGKEE-RKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSK 900
P+++ +K P EVK V K K+E +K + KK++ K+ KK + L + +P +
Sbjct: 696 PKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKPAAL 755
Query: 901 KHKAKDDKKVIKSAS 915
K K ++ +K S
Sbjct: 756 KPKVPKKEESVKKDS 770
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 35.4 bits (80), Expect = 0.26
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 31 GGAGQRFMVPGGTMKSLKKDSRLRITPTRLLEASENVKEKKRAKGPEQPTPTIQEEPEPV 90
G + VPG + K I + + S +K+K+ KG E+ P +E EP
Sbjct: 434 GAVSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKEEKVPASLKEKEPE 493
Query: 91 SNVLQ-----GDDILALAIKKEDLKEQHIPRLTEKEDKRVITQKFIIRKLKPMDPRRKVC 145
+ + G ++ + + KE+ +KE K I++K I K + P + V
Sbjct: 494 TKKDEKMSKAGKEVKPKPPQLQGKKEEKPEPQIKKEAKPAISEKVQIHKQDIVKPEKTVS 553
Query: 146 H 146
H
Sbjct: 554 H 554
Score = 32.0 bits (71), Expect = 2.9
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 850 PPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSK-KHKAKDDK 908
PP+ + ++ K K+E+ + K Q + KE +KG + + ++++P K HK K +K
Sbjct: 136 PPLRKKEIHKDKTEKQEKP---ERKIQTKVTHKEKEKGKEKVREKEKPEKKATHKEKIEK 192
Query: 909 K 909
K
Sbjct: 193 K 193
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 35.0 bits (79), Expect = 0.35
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 831 LPEKETIYLNVPEEQDQKSPPIMEVKVPVGKAGKEE-------------RKGAAQEKKQL 877
+P+KE + V EE+ P ++VK P KA +E+ +K A +K+
Sbjct: 814 IPKKEEVKSPVKEEE---KPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAP 870
Query: 878 GIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKV 910
K +E K+ A KE + +KK +A+D KKV
Sbjct: 871 KPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKV 903
Score = 32.0 bits (71), Expect = 2.9
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 662 AEEARPGDKEHVSPIATEKASVNAELLPRFRSPISETQVPRPENEALRESGSQKARVGTK 721
AEEA +KE SP+ E S P S +V PE K+ K
Sbjct: 506 AEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAK 565
Query: 722 SPQRKSIMEEILVE-----ESPDVDSTKSPWE 748
SP+++ V+ +SP + KSP E
Sbjct: 566 SPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAE 597
Score = 31.6 bits (70), Expect = 3.8
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 64 SENVKEKKRAKGP--EQPTPTIQEEPEPVSNVLQGDDILALAIKKEDLK-----EQHIPR 116
+E K+ K+ + P E P P ++E+ EP + + A + ED K E+ P
Sbjct: 853 TEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPA 912
Query: 117 LTEKEDKRVITQKFIIRKLKPMDPRRKVCHLVARPANPDEA 157
E ++ +K + K +P D + K ++PA EA
Sbjct: 913 KVEVKEDAKPKEKTEVAKKEPDDAKAKE---PSKPAEKKEA 950
Score = 31.2 bits (69), Expect = 5.0
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 832 PEKETIYLNVPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLL 891
P++ + E +D+K P E + P KE+ K +EK ++ K+ +D K
Sbjct: 885 PKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAK--PKEKTEVAKKEPDDAK----- 937
Query: 892 GKEDRPNSKKHKAKDDKKVIK 912
KE ++K +A +KK K
Sbjct: 938 AKEPSKPAEKKEAAPEKKDTK 958
Score = 30.4 bits (67), Expect = 8.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 844 EQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHK 903
E +K P + K P A K+E ++ K+ K E+K + KED K
Sbjct: 927 EVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP 986
Query: 904 AKDD-KKVIKSASQDRFSLEDP 924
+K +K KS+S D+ + P
Sbjct: 987 SKPKAEKAEKSSSTDQKDSKPP 1008
>gi|51317358 HGFL protein isoform 1 [Homo sapiens]
Length = 263
Score = 34.7 bits (78), Expect = 0.45
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 99 ILALAIKK-EDLKEQHIPRLTEKEDKRVI--TQKFIIRKLKPMDPRRKVCHLVARPANPD 155
IL + K+ +DLKEQH ++ E+E +R+ F + +D + V H P +P
Sbjct: 189 ILGYSYKRGKDLKEQHDQKVCEREMQRITLPLSAFTNPTCEIVDEKTVVVHTSQTPVDPQ 248
Query: 156 EATKPL 161
E T PL
Sbjct: 249 EGTTPL 254
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 33.9 bits (76), Expect = 0.77
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKH 902
EE + P E K K +EE K A ++ K KDKE+ K + ++ P S++
Sbjct: 642 EEGKEGKTPSKEKKKKKKKGKEEEEKAAKKKSKHKKSKDKEEGKEERRRRQQRPPRSRER 701
Query: 903 KAKDD 907
A D+
Sbjct: 702 TAADE 706
>gi|157738629 kinesin family member 13A isoform d [Homo sapiens]
Length = 1749
Score = 33.9 bits (76), Expect = 0.77
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 385 SQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSSEDTAYLGTL-----------ASSS 433
S+ D+ G + KGWP + + + DY+ SS +D A GTL +S
Sbjct: 1381 SRPDLSGFDEDDKGWPENQLDMSDYS-------SSYQDVACYGTLPRDSPRRNKEGCTSE 1433
Query: 434 DVSMPILGPSLLFCGKPACWIRGSNP---QDKRQVGIAAHLTFETLEGEKTSSELTVVNN 490
+ P F +P + + P + K+++ + A + E+ +EL +N
Sbjct: 1434 TPHALTVSPFKAFSPQPPKFFKPLMPVKEEHKKRIALEARPLLSQEDSEEEENELEAINR 1493
Query: 491 GTVA 494
++
Sbjct: 1494 KLIS 1497
>gi|157738627 kinesin family member 13A isoform c [Homo sapiens]
Length = 1757
Score = 33.9 bits (76), Expect = 0.77
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 385 SQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSSEDTAYLGTL-----------ASSS 433
S+ D+ G + KGWP + + + DY+ SS +D A GTL +S
Sbjct: 1381 SRPDLSGFDEDDKGWPENQLDMSDYS-------SSYQDVACYGTLPRDSPRRNKEGCTSE 1433
Query: 434 DVSMPILGPSLLFCGKPACWIRGSNP---QDKRQVGIAAHLTFETLEGEKTSSELTVVNN 490
+ P F +P + + P + K+++ + A + E+ +EL +N
Sbjct: 1434 TPHALTVSPFKAFSPQPPKFFKPLMPVKEEHKKRIALEARPLLSQEDSEEEENELEAINR 1493
Query: 491 GTVA 494
++
Sbjct: 1494 KLIS 1497
>gi|157738625 kinesin family member 13A isoform b [Homo sapiens]
Length = 1770
Score = 33.9 bits (76), Expect = 0.77
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 385 SQQDIDGLEVVGKGWPFSAVTVEDYTVFERSQGSSSEDTAYLGTL-----------ASSS 433
S+ D+ G + KGWP + + + DY+ SS +D A GTL +S
Sbjct: 1394 SRPDLSGFDEDDKGWPENQLDMSDYS-------SSYQDVACYGTLPRDSPRRNKEGCTSE 1446
Query: 434 DVSMPILGPSLLFCGKPACWIRGSNP---QDKRQVGIAAHLTFETLEGEKTSSELTVVNN 490
+ P F +P + + P + K+++ + A + E+ +EL +N
Sbjct: 1447 TPHALTVSPFKAFSPQPPKFFKPLMPVKEEHKKRIALEARPLLSQEDSEEEENELEAINR 1506
Query: 491 GTVA 494
++
Sbjct: 1507 KLIS 1510
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.9 bits (76), Expect = 0.77
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 222 QKAPKEEKRPPWAPPPQHNFLKNWQRNTALRKKQQEAL---SEHLKKPVSELLMHTGETY 278
+ P+EE++ N K + A +K QE SE K+PVS + + + E
Sbjct: 326 ESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKR 385
Query: 279 RRIQEERELIDCTLPTRRDRKSWENSGFWSRLEYLGDE 316
R++QEER + + TR + W + + +Y E
Sbjct: 386 RQLQEERPELSESELTRLLARMWNDLSEKKKAKYKARE 423
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.9 bits (76), Expect = 0.77
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 222 QKAPKEEKRPPWAPPPQHNFLKNWQRNTALRKKQQEAL---SEHLKKPVSELLMHTGETY 278
+ P+EE++ N K + A +K QE SE K+PVS + + + E
Sbjct: 326 ESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKR 385
Query: 279 RRIQEERELIDCTLPTRRDRKSWENSGFWSRLEYLGDE 316
R++QEER + + TR + W + + +Y E
Sbjct: 386 RQLQEERPELSESELTRLLARMWNDLSEKKKAKYKARE 423
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 33.9 bits (76), Expect = 0.77
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 222 QKAPKEEKRPPWAPPPQHNFLKNWQRNTALRKKQQEAL---SEHLKKPVSELLMHTGETY 278
+ P+EE++ N K + A +K QE SE K+PVS + + + E
Sbjct: 363 ESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKR 422
Query: 279 RRIQEERELIDCTLPTRRDRKSWENSGFWSRLEYLGDE 316
R++QEER + + TR + W + + +Y E
Sbjct: 423 RQLQEERPELSESELTRLLARMWNDLSEKKKAKYKARE 460
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 33.9 bits (76), Expect = 0.77
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 849 SPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKD-KEDKKGAKLLGKEDRPNSKKHKAK 905
SPP + VP+ KA +E KG KK G KD K+ KG K G + R +K K
Sbjct: 229 SPPQVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRK 286
Score = 31.2 bits (69), Expect = 5.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 863 GKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSASQDRFSLE 922
GK ++K + ++ +D E+K ++ G + PN KK K DKK K+ + + E
Sbjct: 63 GKRKKKEGSNDELSENEEDLEEKSESE--GSDYSPNKKKKKKLKDKKEKKAKRKKKDEDE 120
Query: 923 DPTPD 927
D D
Sbjct: 121 DDNDD 125
>gi|83921609 hypothetical protein LOC127254 [Homo sapiens]
Length = 1530
Score = 33.9 bits (76), Expect = 0.77
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 605 QELLMGVLTPERTPSPVDAYLTEEDLFRHRNPPLHYEHQVVQSLHQLWRQYMTLPAKAEE 664
Q L++ VL ++ S + L E+ + + L+ EH LH++ + A +EE
Sbjct: 879 QALMLTVLETDKAASEGEQGL-EKAVLANEAAALNLEH-----LHEV--AALREAATSEE 930
Query: 665 ARPGDKEHVSPIATEKASVNAELLPRFRSPISETQVPRPENEALRESGSQKARVGTKSP- 723
VS + + + +L E P + + RE GS++A +G + P
Sbjct: 931 GEAEGGVAVSDVGESEEEASIDL---------EDTGPMEDTASKREDGSEEAILGGEEPA 981
Query: 724 -QRKSIM--EEILVEESPDVDSTK---SPWEPD-GLPLLEWNLCLEDFRKAVMVLPDENH 776
+RK +M E L + + ++++ S P+ G E LC ED MV E +
Sbjct: 982 KERKEVMRTETRLSPFTGEAEASRMQVSEGSPEEGSLAKEAFLCKEDVEGEEMVTEAEAN 1041
Query: 777 REDALMRLNKAALELCQKPR 796
RED + L+L ++ R
Sbjct: 1042 REDDRKEILPKELDLARERR 1061
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 33.5 bits (75), Expect = 1.0
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 835 ETIYLNVPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKE 894
E+ + E ++K + E+++ V K E G +K +++ + KLL +E
Sbjct: 827 ESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQRE 886
Query: 895 DRPNSKKHKAKD--DKKVIKSASQDRFSLEDPTP 926
++ + +D DK+ ++S S+D+ ++ TP
Sbjct: 887 KEKELERERERDKKDKEKLESRSKDKKEKDECTP 920
>gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like
isoform 2 [Homo sapiens]
Length = 1240
Score = 33.1 bits (74), Expect = 1.3
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 833 EKETIYLNVPEEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLG 892
E++ IY +VP E P E + A R GA ++ + LG E + ++ G
Sbjct: 126 EEDVIYDDVPCESPDAHQPGAERNLLYEDA---HRAGAPRQAEDLGWSSSEFESYSEDSG 182
Query: 893 KEDRPNSK----KHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSL 948
+E +P + KH+ K+ + + +D ++ + L
Sbjct: 183 EEAKPEVEVEPAKHRVSFQPKMTQLMKAAKSGTKDGLEKTRMAVMRKVSFLHRKDVLGDS 242
Query: 949 HSEVRGLLDTLVTDLMVLADELSPI 973
E GLL+ V+D+ A EL P+
Sbjct: 243 EEEDMGLLEVSVSDIKPPAPELGPM 267
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 864 KEERKGAAQEKKQLGIKDKE-----DKKGAKLLGKED-RPNSKKHKAKDDKKVIK 912
KE +K A ++ K++ KD E KK AK K+D + ++KK+ KD+KK K
Sbjct: 290 KESKKDATKDAKKVAKKDTEKESADSKKDAKKNAKKDAKKDAKKNAKKDEKKDAK 344
Score = 30.8 bits (68), Expect = 6.5
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 860 GKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKED-RPNSKKHKAKDDKKVIKSASQ 916
G K+ +K A + KK G KDK+ K+D + SKK KD KKV K ++
Sbjct: 254 GDESKDAKKDAKEIKK--GKKDKKKPSSTDSDSKDDVKKESKKDATKDAKKVAKKDTE 309
Score = 30.4 bits (67), Expect = 8.5
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 860 GKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKHKAKDDKKVIKSASQDRF 919
GK ++ K +A E + + +K+D+ G K K D K AK+ KK K +
Sbjct: 220 GKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDAKKDAKEIKKGKKDKKKPSS 279
Query: 920 SLEDPTPDIILSSQE 934
+ D D+ S++
Sbjct: 280 TDSDSKDDVKKESKK 294
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 33.1 bits (74), Expect = 1.3
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIK------DKEDKKGAKLLGKEDR 896
EE++ + PP + VP + G K AA+ + + D+ED+K + + K +
Sbjct: 93 EEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDDDEEDQK-KQPVQKGVK 151
Query: 897 PNSKKHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEP-IDPLVMGKYTQS 947
P +K KA KK S S S ED P +Q+P I P+ + T++
Sbjct: 152 PQAKAAKA-PPKKAKSSDSDSDSSSEDEPP----KNQKPKITPVTVKAQTKA 198
>gi|51243032 oxysterol-binding protein-like protein 8 isoform b
[Homo sapiens]
Length = 847
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 893 KEDRPNSKKHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSLHSEV 952
K D+ N ++H D++ + KS D + E I EP++PL YT+ H E+
Sbjct: 288 KSDKENDQEHDESDNEVMGKSEESDTDTSERQDDSYI--EPEPVEPLKETTYTEQSHEEL 345
>gi|18079218 oxysterol-binding protein-like protein 8 isoform a
[Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 893 KEDRPNSKKHKAKDDKKVIKSASQDRFSLEDPTPDIILSSQEPIDPLVMGKYTQSLHSEV 952
K D+ N ++H D++ + KS D + E I EP++PL YT+ H E+
Sbjct: 330 KSDKENDQEHDESDNEVMGKSEESDTDTSERQDDSYI--EPEPVEPLKETTYTEQSHEEL 387
>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 1.7
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKH 902
EEQ+QK+ E + K+++ EKK+ KEDK+ + GKE ++
Sbjct: 497 EEQEQKAKKKQEAEENE-ITEKQQKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQS 555
Query: 903 KAKDDKKVIKSASQDRFSLEDPTPDI 928
K++ + K + +DR PTP+I
Sbjct: 556 KSEHETSDAKKSVEDR-GKRCPTPEI 580
>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 1.7
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKH 902
EEQ+QK+ E + K+++ EKK+ KEDK+ + GKE ++
Sbjct: 497 EEQEQKAKKKQEAEENE-ITEKQQKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQS 555
Query: 903 KAKDDKKVIKSASQDRFSLEDPTPDI 928
K++ + K + +DR PTP+I
Sbjct: 556 KSEHETSDAKKSVEDR-GKRCPTPEI 580
>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 1.7
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKH 902
EEQ+QK+ E + K+++ EKK+ KEDK+ + GKE ++
Sbjct: 497 EEQEQKAKKKQEAEENE-ITEKQQKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQS 555
Query: 903 KAKDDKKVIKSASQDRFSLEDPTPDI 928
K++ + K + +DR PTP+I
Sbjct: 556 KSEHETSDAKKSVEDR-GKRCPTPEI 580
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 32.3 bits (72), Expect = 2.2
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 843 EEQDQKSPPIMEVKVPVGKAGKEERKGAAQEKKQLGIKDKEDKKGAKLLGKEDRPNSKKH 902
E + Q S + + ++ V K ++++ Q++K++ K+KE+ K LGK DR KK
Sbjct: 767 ETRQQMSAELWKERLAVLKEENDKKRAEKQKRKEMEAKNKENGKVENGLGKTDR---KKE 823
Query: 903 KAKDDKKV 910
K + +V
Sbjct: 824 IVKFEPQV 831
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 32.3 bits (72), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 43 TMKSLKKDSRLRITPTRLLEASENVKEKKRAKGPEQPTPTIQEEPEPVS 91
T K L + ++ PT + + E+ PE+PTPT EEP P +
Sbjct: 486 TPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTT 534
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 32.3 bits (72), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 43 TMKSLKKDSRLRITPTRLLEASENVKEKKRAKGPEQPTPTIQEEPEPVS 91
T K L + ++ PT + + E+ PE+PTPT EEP P +
Sbjct: 527 TPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTT 575
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 32.3 bits (72), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 43 TMKSLKKDSRLRITPTRLLEASENVKEKKRAKGPEQPTPTIQEEPEPVS 91
T K L + ++ PT + + E+ PE+PTPT EEP P +
Sbjct: 579 TPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTT 627
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,729,883
Number of Sequences: 37866
Number of extensions: 2111788
Number of successful extensions: 8956
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 8488
Number of HSP's gapped (non-prelim): 543
length of query: 984
length of database: 18,247,518
effective HSP length: 112
effective length of query: 872
effective length of database: 14,006,526
effective search space: 12213690672
effective search space used: 12213690672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.