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Search of human proteins with 20270389
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20270389 HIG1 hypoxia inducible domain family, member 2A
[Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Hom... 213 3e-56
gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A... 97 3e-21
gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A... 62 1e-10
gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A... 62 1e-10
gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo ... 62 1e-10
gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens] 55 9e-09
gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens] 55 9e-09
gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens] 55 9e-09
gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo... 55 1e-08
gi|157817101 HIG1 domain family, member 1C [Homo sapiens] 49 1e-06
gi|239753127 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo ... 33 0.065
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens] 30 0.55
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens] 30 0.55
gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens] 30 0.55
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 30 0.55
gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2... 30 0.55
gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ... 30 0.55
gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens] 29 0.72
gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens] 29 0.72
gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo ... 29 0.72
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 29 0.94
gi|145309324 FH2 domain containing 1 [Homo sapiens] 28 1.2
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 28 1.6
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 27 2.7
gi|31455611 zeta-chain associated protein kinase 70kDa isoform 1... 27 2.7
gi|40255047 pleckstrin homology domain containing, family H (wit... 27 2.7
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 27 2.7
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 27 2.7
gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase... 27 3.6
>gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Homo
sapiens]
Length = 106
Score = 213 bits (542), Expect = 3e-56
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL 60
MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL
Sbjct: 1 MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL 60
Query: 61 TYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP 106
TYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP
Sbjct: 61 TYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP 106
>gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A
[Homo sapiens]
Length = 103
Score = 97.1 bits (240), Expect = 3e-21
Identities = 56/98 (57%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 1 MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL 60
M P PV P PFE S+P VIEG SPT S K F KT +NP VPIGCL+ A L
Sbjct: 1 MVNPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFA-KTCKNPTVPIGCLSKAITL 59
Query: 61 TYGL-YSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGL 97
TY L Y F++G+SQ QLM RT I QGFTV AILL L
Sbjct: 60 TYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHL 97
>gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVA 91
E+ K +RK +E P+VP+G AA +TYGLY RGN+Q S ++ R+AAQGF V
Sbjct: 45 EAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVG 104
Query: 92 AILLGL 97
A+ +G+
Sbjct: 105 AMTIGM 110
>gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVA 91
E+ K +RK +E P+VP+G AA +TYGLY RGN+Q S ++ R+AAQGF V
Sbjct: 45 EAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVG 104
Query: 92 AILLGL 97
A+ +G+
Sbjct: 105 AMTIGM 110
>gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo
sapiens]
Length = 124
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVA 91
E+ K +RK +E P+VP+G AA +TYGLY RGN+Q S ++ R+AAQGF V
Sbjct: 45 EAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVG 104
Query: 92 AILLGL 97
A+ +G+
Sbjct: 105 AMTIGM 110
>gi|153085470 HIG1 domain family, member 1A isoform b [Homo
sapiens]
Length = 93
Score = 55.5 bits (132), Expect = 9e-09
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 KFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVAAILLG 96
K +RK +E P VP+G AA + YGLY RGN++ S ++ R+AAQGF V A+ +G
Sbjct: 19 KLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVG 78
Query: 97 L 97
+
Sbjct: 79 M 79
>gi|153085461 HIG1 domain family, member 1A isoform a [Homo
sapiens]
Length = 107
Score = 55.5 bits (132), Expect = 9e-09
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 KFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVAAILLG 96
K +RK +E P VP+G AA + YGLY RGN++ S ++ R+AAQGF V A+ +G
Sbjct: 33 KLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVG 92
Query: 97 L 97
+
Sbjct: 93 M 93
>gi|153085463 HIG1 domain family, member 1A isoform b [Homo
sapiens]
Length = 93
Score = 55.5 bits (132), Expect = 9e-09
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 KFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVAAILLG 96
K +RK +E P VP+G AA + YGLY RGN++ S ++ R+AAQGF V A+ +G
Sbjct: 19 KLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVG 78
Query: 97 L 97
+
Sbjct: 79 M 79
>gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo
sapiens]
Length = 99
Score = 55.1 bits (131), Expect = 1e-08
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 37 EKFVRKTRENPVVPI---GCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAI 93
EK +RKTRE+P+VPI GCL AA Y L S RG+++ S ++ TR+AAQ V AI
Sbjct: 19 EKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRS--RGSTKMSIHLIHTRVAAQACAVGAI 76
Query: 94 LLGLAVT 100
+LG T
Sbjct: 77 MLGAVYT 83
>gi|157817101 HIG1 domain family, member 1C [Homo sapiens]
Length = 97
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 38 KFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVAAILLG 96
+ +RK+R++P VPIG ++ GLY +R + + S ++ R+AAQGF V A+ LG
Sbjct: 18 RLIRKSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIHLIHMRVAAQGFVVGAVTLG 77
Query: 97 LAVTAMK 103
+ + K
Sbjct: 78 VLYSMYK 84
>gi|239753127 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 44 RENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 95
R + ++ + C +TA A++ S+H GNS ++L+ R GF V +L+
Sbjct: 58 RAHSIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLV 109
>gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo
sapiens]
Length = 172
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 44 RENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 95
R + ++ + C +TA A++ S+H GNS ++L+ R GF V +L+
Sbjct: 58 RAHSIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLV 109
>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
Length = 4022
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 13 FEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNS 72
F P+ +G V +P S + +T ++P+V IG T A +T+ L +S
Sbjct: 352 FVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESS 411
Query: 73 QRSQLMMRTRIA----AQGFTVAAILLG 96
S ++++ +G TV A+++G
Sbjct: 412 YYSPQKVKSKEVLCWEQEGTTVEALMMG 439
>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
Length = 3997
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 13 FEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNS 72
F P+ +G V +P S + +T ++P+V IG T A +T+ L +S
Sbjct: 352 FVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESS 411
Query: 73 QRSQLMMRTRIA----AQGFTVAAILLG 96
S ++++ +G TV A+++G
Sbjct: 412 YYSPQKVKSKEVLCWEQEGTTVEALMMG 439
>gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]
Length = 863
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 13 FEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNS 72
F P+ +G V +P S + +T ++P+V IG T A +T+ L +S
Sbjct: 352 FVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESS 411
Query: 73 QRSQLMMRTRIA----AQGFTVAAILLG 96
S ++++ +G TV A+++G
Sbjct: 412 YYSPQKVKSKEVLCWEQEGTTVEALMMG 439
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 29.6 bits (65), Expect = 0.55
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 4 PGPVIPEVPFEPSKPPVIEGLSP 26
P PV+P P P++PPV+ L+P
Sbjct: 283 PPPVLPLQPCSPAQPPVLPALAP 305
>gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 ATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIG 52
A PGP P +P P PP + G + +P + R RENP V +G
Sbjct: 85 ALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLE----RVQRENPGVLMG 131
>gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 ATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIG 52
A PGP P +P P PP + G + +P + R RENP V +G
Sbjct: 85 ALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLE----RVQRENPGVLMG 131
>gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 ATPGPVIPEVPFEPSKPPVI--EGLSPTVYRNPESFKEKFVRKTRENP 47
ATPGP P +P PP++ + V RNP +EK ++ P
Sbjct: 110 ATPGPAHPSIPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKP 157
>gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 ATPGPVIPEVPFEPSKPPVI--EGLSPTVYRNPESFKEKFVRKTRENP 47
ATPGP P +P PP++ + V RNP +EK ++ P
Sbjct: 110 ATPGPAHPSIPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKP 157
>gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo
sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 ATPGPVIPEVPFEPSKPPVI--EGLSPTVYRNPESFKEKFVRKTRENP 47
ATPGP P +P PP++ + V RNP +EK ++ P
Sbjct: 110 ATPGPAHPSIPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKP 157
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 28.9 bits (63), Expect = 0.94
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 3 TPGPVIP-EVPFEPSKPPVIEGLSPTVYRNPES 34
TP P +P E+ +PS P + LSPT + PES
Sbjct: 1089 TPLPTLPKELTSDPSTPSEVTSLSPTSEQVPES 1121
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 4 PGPVIPEVPFEPSKPPVIEGLSPTVYRN 31
P P P +P EP PP GL PT + N
Sbjct: 59 PPPPPPPLPGEPPIPPPPPGLPPTTHMN 86
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 PGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVV 49
PGP P P P+ PPV L P R P S + + PV+
Sbjct: 59 PGPAPPASPAAPAAPPVASDLGP---RPPVSLDPRVSIYSTRRPVL 101
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 2 ATPGPVIPEVPFEPSKPPV 20
ATPGP + PF P PPV
Sbjct: 239 ATPGPPLGSFPFLPGGPPV 257
>gi|31455611 zeta-chain associated protein kinase 70kDa isoform 1
[Homo sapiens]
Length = 619
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 3 TPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPV---VPIGCLATAAA 59
TP P P +P P+ + + Y +PE K+K + R+N + + +GC +
Sbjct: 293 TPEPARITSPDKPRPMPMDTSVYESPYSDPEELKDKKLFLKRDNLLIADIELGC-GNFGS 351
Query: 60 LTYGLYSFHRGNSQRSQLMMRTRIAAQG 87
+ G+Y ++ Q+ + ++ QG
Sbjct: 352 VRQGVY-----RMRKKQIDVAIKVLKQG 374
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 22 EGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRT 81
EGLSP + P F++ R P P L AAL L S HR S R L
Sbjct: 503 EGLSPDGHELPFLFEQAHALLLRGRPPPPDDTLRALAALR--LQSLHRDFSPRVPLPRLD 560
Query: 82 RI 83
R+
Sbjct: 561 RL 562
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 TPGPVIP-EVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVP 50
T P IP E P PS+ P I PTV + + + E PV+P
Sbjct: 630 TEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEEPVIP 678
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 TPGPVIP-EVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVP 50
T P IP E P PS+ P I PTV + + + E PV+P
Sbjct: 630 TEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEEPVIP 678
>gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase
2 [Homo sapiens]
Length = 883
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 2 ATPGPVIPEVPFEPSKPPVIEGLSPTV 28
A PGP P VP P +PP P V
Sbjct: 61 AGPGPARPPVPPRPPRPPETARTEPVV 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,290,982
Number of Sequences: 37866
Number of extensions: 177627
Number of successful extensions: 726
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 71
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.