Guide to the Human Genome
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Name: LOC100287960 Sequence: fasta or formatted (124aa) NCBI GI: 239744403
Description:

PREDICTED: hypothetical protein XP_002343136

Not currently referenced in the text

Other entries for this name:
alt mRNA {124aa} PREDICTED: similar to HIG1 domain family, member 1A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         11           2
 C cysteine            0.0          0           0
 D aspartate           5.6          7           1
 E glutamate           9.7         12           2
 F phenylalanine       3.2          4           1
 G glycine             7.3          9           1
 H histidine           3.2          4           1
 I isoleucine          7.3          9           2
 K lysine              5.6          7           1
 L leucine             8.9         11           1
 M methionine          4.8          6           1
 N asparagine          1.6          2           1
 P proline             3.2          4           1
 Q glutamine           3.2          4           1
 R arginine            4.0          5           1
 S serine              6.5          8           2
 T threonine           4.8          6           1
 V valine              7.3          9           2
 W tryptophan          0.8          1           1
 Y tyrosine            4.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343136 
LOC100292549          1.000   PREDICTED: similar to HIG1 domain family, member 1A...
LOC100287960          1.000   PREDICTED: similar to HIG1 domain family, member 1A...
HIGD1A                0.694   HIG1 domain family, member 1A isoform a 
HIGD1A                0.644   HIG1 domain family, member 1A isoform b 
HIGD1A                0.644   HIG1 domain family, member 1A isoform b 
HIGD1C                0.356   HIG1 domain family, member 1C 
HIGD1B                0.270   HIG1 hypoxia inducible domain family, member 1B [Homo...
HIGD2A                0.167   HIG1 hypoxia inducible domain family, member 2A [Hom...
PDCL3                 0.068   phosducin-like 3 
LOC100132514          0.036   PREDICTED: similar to HIG1 domain family, member 2A...
PDCL2                 0.014   phosducin-like 2 
CHMP6                 0.014   chromatin modifying protein 6 
GTPBP4                0.014   G protein-binding protein CRFG 
GPIHBP1               0.009   glycosylphosphatidylinositol anchored high density l...
AKAP9                 0.009   A-kinase anchor protein 9 isoform 2 
MGA                   0.005   MAX gene associated 
KIAA1704              0.005   hypothetical protein LOC55425 
TTN                   0.005   titin isoform N2-A 
PCDHGB6               0.005   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.005   protocadherin gamma subfamily B, 6 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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