Guide to the Human Genome
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Name: HIGD1A Sequence: fasta or formatted (93aa) NCBI GI: 153085470
Description:

HIG1 domain family, member 1A isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {107aa} HIG1 domain family, member 1A isoform a
alt mRNA {93aa} HIG1 domain family, member 1A isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         10           2
 C cysteine            0.0          0           0
 D aspartate           2.2          2           1
 E glutamate           4.3          4           2
 F phenylalanine       4.3          4           1
 G glycine            10.8         10           1
 H histidine           2.2          2           1
 I isoleucine          5.4          5           1
 K lysine              8.6          8           1
 L leucine             5.4          5           1
 M methionine          6.5          6           1
 N asparagine          1.1          1           1
 P proline             5.4          5           1
 Q glutamine           2.2          2           1
 R arginine            4.3          4           1
 S serine              7.5          7           1
 T threonine           4.3          4           1
 V valine              8.6          8           2
 W tryptophan          1.1          1           1
 Y tyrosine            5.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HIG1 domain family, member 1A isoform b 
HIGD1A                1.000   HIG1 domain family, member 1A isoform a 
HIGD1A                1.000   HIG1 domain family, member 1A isoform b 
LOC100292549          0.872   PREDICTED: similar to HIG1 domain family, member 1A...
LOC100287960          0.872   PREDICTED: similar to HIG1 domain family, member 1A...
LOC100287960          0.872   PREDICTED: hypothetical protein XP_002343136 
HIGD1C                0.506   HIG1 domain family, member 1C 
HIGD1B                0.390   HIG1 hypoxia inducible domain family, member 1B [Homo...
HIGD2A                0.183   HIG1 hypoxia inducible domain family, member 2A [Hom...
LOC100132514          0.012   PREDICTED: similar to HIG1 domain family, member 2A...
SLC39A11              0.006   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.006   solute carrier family 39, member 11 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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