Guide to the Human Genome
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Name: LOC100292606 Sequence: fasta or formatted (172aa) NCBI GI: 239753127
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         18           2
 C cysteine            2.9          5           1
 D aspartate           1.7          3           1
 E glutamate           2.9          5           2
 F phenylalanine       2.9          5           1
 G glycine             8.7         15           2
 H histidine           4.7          8           1
 I isoleucine          1.2          2           1
 K lysine              1.7          3           1
 L leucine            13.4         23           2
 M methionine          2.3          4           1
 N asparagine          2.3          4           1
 P proline             7.6         13           2
 Q glutamine           5.2          9           1
 R arginine            8.7         15           1
 S serine              9.3         16           2
 T threonine           5.8         10           1
 V valine              4.1          7           2
 W tryptophan          2.9          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288694          1.000   PREDICTED: hypothetical protein XP_002342239 
HIGD2A                0.024   HIG1 hypoxia inducible domain family, member 2A [Hom...
NPDC1                 0.021   neural proliferation, differentiation and control, ...
GPR45                 0.015   G protein-coupled receptor 45 
MRPL37                0.015   mitochondrial ribosomal protein L37 
RGS12                 0.015   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.015   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.015   regulator of G-protein signalling 12 isoform 3 [Homo...
LOC100292419          0.006   PREDICTED: hypothetical protein 
LOC100290297          0.006   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.006   PREDICTED: hypothetical protein XP_002343540 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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