VPS13B 26520

Name: VPS13B	Sequence: fasta or formatted (863aa)		NCBI GI: 35493725
Description: vacuolar protein sorting 13B isoform 3		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [415aa] vacuolar protein sorting 13B isoform 4 alt prot [3997aa] vacuolar protein sorting 13B isoform 1 alt prot [4022aa] vacuolar protein sorting 13B isoform 5
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.1 35 2 C cysteine 2.7 23 1 D aspartate 5.2 45 2 E glutamate 7.3 63 2 F phenylalanine 3.9 34 2 G glycine 5.1 44 2 H histidine 2.3 20 2 I isoleucine 6.8 59 1 K lysine 5.3 46 1 L leucine 10.8 93 3 M methionine 2.9 25 2 N asparagine 4.6 40 2 P proline 4.3 37 2 Q glutamine 4.4 38 2 R arginine 3.1 27 2 S serine 9.0 78 3 T threonine 7.0 60 2 V valine 6.1 53 2 W tryptophan 1.0 9 1 Y tyrosine 3.9 34 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 13B isoform 3 VPS13B 0.972 vacuolar protein sorting 13B isoform 5 VPS13B 0.972 vacuolar protein sorting 13B isoform 1 VPS13B 0.460 vacuolar protein sorting 13B isoform 4 VPS13C 0.034 vacuolar protein sorting 13C protein isoform 1A [Hom... VPS13C 0.034 vacuolar protein sorting 13C protein isoform 1B [Hom... VPS13A 0.029 vacuolar protein sorting 13A isoform B VPS13A 0.029 vacuolar protein sorting 13A isoform D VPS13A 0.029 vacuolar protein sorting 13A isoform A VPS13A 0.029 vacuolar protein sorting 13A isoform C VPS13C 0.027 vacuolar protein sorting 13C protein isoform 2B [Hom... VPS13C 0.027 vacuolar protein sorting 13C protein isoform 2A [Hom... VPS13D 0.023 vacuolar protein sorting 13D isoform 2 VPS13D 0.023 vacuolar protein sorting 13D isoform 1 UHRF1BP1 0.017 ICBP90 binding protein 1 UHRF1BP1L 0.017 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... UHRF1BP1L 0.017 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... DLGAP5 0.008 discs large homolog 7 isoform b C15orf40 0.008 hypothetical protein LOC123207 isoform d ADCK4 0.005 aarF domain containing kinase 4 isoform b ADCK4 0.005 aarF domain containing kinase 4 isoform a CHEK2 0.005 protein kinase CHK2 isoform c STAP2 0.005 signal transducing adaptor family member 2 isoform 1... FAM71F1 0.005 testes development-related NYD-SP18 LOC100128260 0.004 PREDICTED: hCG_1742852 LOC100128260 0.004 PREDICTED: hCG_1742852 LOC100288773 0.004 PREDICTED: hypothetical protein XP_002343911 LOC100128260 0.004 PREDICTED: hCG_1742852 C14orf178 0.004 hypothetical protein LOC283579 TPCN1 0.004 two pore segment channel 1 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.