Search of human proteins with 20270253

Search of human proteins with 20270253

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20270253 activating signal cointegrator 1 complex subunit 2
[Homo sapiens]
         (757 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20270253 activating signal cointegrator 1 complex subunit 2 [...  1527   0.0  
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             45   2e-04
gi|55956788 nucleolin [Homo sapiens]                                   41   0.004
gi|221316599 chromogranin B precursor [Homo sapiens]                   40   0.006
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]                   40   0.010
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]                   39   0.014
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        39   0.018
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        38   0.040
gi|52426743 cisplatin resistance-associated overexpressed protei...    37   0.052
gi|19923485 cisplatin resistance-associated overexpressed protei...    37   0.052
gi|169161522 PREDICTED: similar to cell division cycle 2-like 1 ...    36   0.12 
gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain c...    36   0.12 
gi|42740903 MTERF domain containing 2 [Homo sapiens]                   35   0.34 
gi|157266334 tubby like protein 1 [Homo sapiens]                       35   0.34 
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]     35   0.34 
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]     35   0.34 
gi|62460633 RNA-binding motif protein 16 [Homo sapiens]                35   0.34 
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       35   0.34 
gi|115527076 src kinase associated phosphoprotein 1 isoform 2 [H...    35   0.34 
gi|18093112 ABT1-associated protein [Homo sapiens]                     35   0.34 
gi|115527074 src kinase associated phosphoprotein 1 isoform 1 [H...    35   0.34 
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso...    34   0.44 
gi|187960109 RNA binding motif protein 28 [Homo sapiens]               34   0.44 
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso...    34   0.44 
gi|21264343 scaffold attachment factor B [Homo sapiens]                34   0.57 
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    34   0.57 
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    34   0.57 
gi|239746067 PREDICTED: functional smad suppressing element 18 [...    34   0.57 
gi|7657455 pescadillo homolog 1, containing BRCT domain [Homo sa...    34   0.57 
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               34   0.57 

>gi|20270253 activating signal cointegrator 1 complex subunit 2
           [Homo sapiens]
          Length = 757

 Score = 1527 bits (3954), Expect = 0.0
 Identities = 757/757 (100%), Positives = 757/757 (100%)

Query: 1   MPALPLDQLQITHKDPKTGKLRTSPALHPEQKADRYFVLYKPPPKDNIPALVEEYLERAT 60
           MPALPLDQLQITHKDPKTGKLRTSPALHPEQKADRYFVLYKPPPKDNIPALVEEYLERAT
Sbjct: 1   MPALPLDQLQITHKDPKTGKLRTSPALHPEQKADRYFVLYKPPPKDNIPALVEEYLERAT 60

Query: 61  FVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQKRLH 120
           FVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQKRLH
Sbjct: 61  FVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQKRLH 120

Query: 121 RSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMI 180
           RSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMI
Sbjct: 121 RSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMI 180

Query: 181 GNIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPLL 240
           GNIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPLL
Sbjct: 181 GNIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPLL 240

Query: 241 ELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRLE 300
           ELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRLE
Sbjct: 241 ELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRLE 300

Query: 301 DSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQE 360
           DSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQE
Sbjct: 301 DSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQE 360

Query: 361 KRFLRDYDALFPVAEDISLLQQASSVLDETRTAYILQAVESAWEGVDRRKATDAKDPSVI 420
           KRFLRDYDALFPVAEDISLLQQASSVLDETRTAYILQAVESAWEGVDRRKATDAKDPSVI
Sbjct: 361 KRFLRDYDALFPVAEDISLLQQASSVLDETRTAYILQAVESAWEGVDRRKATDAKDPSVI 420

Query: 421 EEPNGEPNGVTVTAEAVSQASSHPENSEEEECMGAAAAVGPAMCGVELDSLISQVKDLLP 480
           EEPNGEPNGVTVTAEAVSQASSHPENSEEEECMGAAAAVGPAMCGVELDSLISQVKDLLP
Sbjct: 421 EEPNGEPNGVTVTAEAVSQASSHPENSEEEECMGAAAAVGPAMCGVELDSLISQVKDLLP 480

Query: 481 DLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVF 540
           DLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVF
Sbjct: 481 DLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVF 540

Query: 541 QNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQ 600
           QNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQ
Sbjct: 541 QNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQ 600

Query: 601 PGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEED 660
           PGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEED
Sbjct: 601 PGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEED 660

Query: 661 DDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQS 720
           DDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQS
Sbjct: 661 DDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQS 720

Query: 721 RETTQERRKKEANKATRANHNRRTMADRKRSKGMIPS 757
           RETTQERRKKEANKATRANHNRRTMADRKRSKGMIPS
Sbjct: 721 RETTQERRKKEANKATRANHNRRTMADRKRSKGMIPS 757


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 26/220 (11%)

Query: 554  DLSRV--HKGK--STRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQPGESLPYHS 609
            D+S +  H+GK  ST  +E  +     +RA AA+R++  + + +  +  L   ES     
Sbjct: 1051 DISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFK 1110

Query: 610  VY--YEDEY---DDTYDGNQVG--ANDADSDDELISRR-------PFTIPQVLRTKVPRE 655
            +    +DE+   D+  D ++    +ND DSD +  SRR       P    + LR K P++
Sbjct: 1111 ISDGSQDEFVVSDENPDESEEDPPSND-DSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKK 1169

Query: 656  GQEEDDDDEEDD---ADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAG 712
               +DD++EE +    D E+   D F  D    R +   R      +  Y+ DS +   G
Sbjct: 1170 KYSDDDEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQK--RQINYKEDSES--DG 1225

Query: 713  SPRGHGQSRETTQERRKKEANKATRANHNRRTMADRKRSK 752
            S +   + +E  +  +++ ++  +  ++  +   D + +K
Sbjct: 1226 SQKSLRRGKEIRRVHKRRLSSSESEESYLSKNSEDDELAK 1265


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 11/171 (6%)

Query: 561 GKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTY 620
           GK+ +KE++     +D        +  ++    +E   ++   + P      ED+ DD  
Sbjct: 137 GKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASED--EDDEDDED 194

Query: 621 DGNQVGANDADSDDELISRRPFT------IPQVLRTKVPREGQEEDDDDEEDDADEEAPK 674
           D +     + DS++E +   P        +  V    V  +  EE+DD++EDD D+E  +
Sbjct: 195 DEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDE 254

Query: 675 PDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQ 725
            D    D     E+ E          G R         +P    Q  E T+
Sbjct: 255 DDDDEDDE---EEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTE 302


>gi|221316599 chromogranin B precursor [Homo sapiens]
          Length = 677

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 66/294 (22%), Positives = 108/294 (36%), Gaps = 42/294 (14%)

Query: 484 EGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVFQND 543
           EG +  C+        +V++N L +  AP ++   R + +  + D     T+ +   +N 
Sbjct: 30  EGMVTRCII-------EVLSNALSKSSAPPITPECRQVLKTSRKDVKDKETTEN---ENT 79

Query: 544 EFDV-FSRDSVDLSRVHKGKSTRK-----EENTRSLL-------------NDKRAVAAQR 584
           +F+V   RD  D S  H+  S  +     EE+ +                + +RA   Q 
Sbjct: 80  KFEVRLLRDPADASEAHESSSRGEAGAPGEEDIQGPTKADTEKWAEGGGHSRERADEPQW 139

Query: 585 QRYEQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTI 644
             Y   S V EEV  +  E         EDE ++  +  Q G    DS +E     P   
Sbjct: 140 SLYPSDSQVSEEVKTRHSEKSQR-----EDEEEEEGENYQKGERGEDSSEEKHLEEP--- 191

Query: 645 PQVLRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRH 704
            +     +    Q      EE  A  E     H  Q+    REK+         + G + 
Sbjct: 192 GETQNAFLNERKQASAIKKEELVARSETHAAGHS-QEKTHSREKSSQESGE---ETGSQE 247

Query: 705 DSSTAVAGSPRGHGQSRETTQERRKKEANKATRANHNR-RTMADRKRSKGMIPS 757
           +      G PR   +S E  ++   +   + TR  H+  R+  DR    G +PS
Sbjct: 248 NHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRSRPDRSSQGGSLPS 301


>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 629 DADSDDE------LIS-----RRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDH 677
           DA+S+DE      L+S       P    +V + KV     E+DDDD+E+D DE+    D 
Sbjct: 122 DAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDF 181

Query: 678 FVQDPAVLREKAEARRM-----AFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKKEA 732
              D     EKA  ++      A  A+K  ++   +  + +PR  GQ     QE+  K  
Sbjct: 182 ---DDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTP 238

Query: 733 NKATRANHNRRTMADRKRSKGMIP 756
              +     +  M       G +P
Sbjct: 239 KGPSSVEDIKAKMQASIEKGGSLP 262


>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
          Length = 259

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 629 DADSDDE------LIS-----RRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDH 677
           DA+S+DE      L+S       P    +V + KV     E+DDDD+E+D DE+    D 
Sbjct: 122 DAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDF 181

Query: 678 FVQDPAVLREKAEARRM-----AFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKK 730
              D     EKA  ++      A  A+K  ++   +  + +PR  GQ     QE+  K
Sbjct: 182 ---DDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPK 236


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 83/354 (23%), Positives = 122/354 (34%), Gaps = 81/354 (22%)

Query: 403 WEGVDRRKATDAKDPSVIEEPNGEPNGVTVTAEAVSQASSHPENSEEEECMGAAAAVGPA 462
           W  +D  K T+ KD      P  EP+    T E   +    PE  EE   +GA   V P 
Sbjct: 543 WVIID--KETELKD----FPPGAEPSTSGTTDEEPEELRPLPEEGEERRRLGAEPTVRPR 596

Query: 463 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLD 522
             G  + +L  +                 +  H  P+          L P LSQ D   +
Sbjct: 597 --GRSMQALAEE-----------------DLQHLPPQP---------LPPQLSQGDGRSE 628

Query: 523 REMKPDPTPLLTSRHNVFQNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAA 582
               P P                      S   S +H G   R+ E+  +    +R V +
Sbjct: 629 TSQPPTP---------------------GSPSHSPLHSGPRPRRRESDPT--GPQRQVFS 665

Query: 583 QRQRYEQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPF 642
               +E     V  +P     SLPY     +D   D  D  +             S    
Sbjct: 666 VAPPFE-----VNGLPRAVPLSLPY-----QDFKRDLSDYRERARLLNRVRRVGFSHMLL 715

Query: 643 TIPQV--------LRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRM 694
           T PQV           K   E +EED+++EE+D +EE  + +   ++     E+ EA   
Sbjct: 716 TTPQVPLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAA 775

Query: 695 AFLAK-KGYRHDSSTAVAGSPRGHGQSRETTQERRKKEANKATRANHNRRTMAD 747
             L +  G R  SS+   GS R   +S+E        +  K +R    R +MAD
Sbjct: 776 VALGEVLGPRSGSSS--EGSERSTDRSQEGAPSTLLADDQKESR---GRASMAD 824


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 680 QDPAVLREKAEARR-MAFLAKKGYRHDSSTAVAG-----SPRGHGQSRETTQERRKKEAN 733
           Q P   R +   RR  +  A++G  H  S A  G     +P   G+SR  T  RR+  + 
Sbjct: 538 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597

Query: 734 KATRANHNRRTMADRKRSKGMIPS 757
             TR     RT A R RS+   P+
Sbjct: 598 TPTRRRSRSRTPARRGRSRSRTPA 621


>gi|52426743 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 651 KVPREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAV 710
           ++ +E QE ++ ++E + + E  +     ++    +E+A  R     ++   RH S T+ 
Sbjct: 246 RLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSD 305

Query: 711 AGSPRGHGQSRETTQERRKKEANKATRA-NHNRRTMADRKRSK 752
               R     R  ++ERR+  +    R+ +H+R     R RS+
Sbjct: 306 RRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSR 348


>gi|19923485 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 651 KVPREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAV 710
           ++ +E QE ++ ++E + + E  +     ++    +E+A  R     ++   RH S T+ 
Sbjct: 246 RLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSD 305

Query: 711 AGSPRGHGQSRETTQERRKKEANKATRA-NHNRRTMADRKRSK 752
               R     R  ++ERR+  +    R+ +H+R     R RS+
Sbjct: 306 RRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSR 348


>gi|169161522 PREDICTED: similar to cell division cycle 2-like 1
           (PITSLRE proteins) [Homo sapiens]
          Length = 155

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 634 DELISRRPFTIPQVLRTKVPREGQEE----------DDDDEEDDADEEAPKPDHFVQDPA 683
           DE  S +  T+ ++L+ K  R+ QEE          DD D + D+ EE    DH ++   
Sbjct: 3   DEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRME--- 59

Query: 684 VLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKKEANKATRANHNRR 743
           +    +  RR   +  +G   DS            +     ++ ++KE  K  R     R
Sbjct: 60  ITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRKHARVKEKER 119

Query: 744 TMADRKRSK 752
               RKR +
Sbjct: 120 EHERRKRHR 128


>gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing A [Homo sapiens]
          Length = 312

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 657 QEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRG 716
           +  ++++EED+  E  P PDH  +     R+  + RR   L  +  R  S    + SP+ 
Sbjct: 192 ESSEEEEEEDEKLERVPSPDHRRRS---YRDLDKPRRSPTLRYRRSRSRSPRRRSRSPK- 247

Query: 717 HGQSRETTQERRKKEANKATRANHNRRTMADRKRSKGMIP 756
               R +   RR++  +K+ R  H  R+   R RS+   P
Sbjct: 248 ----RRSPSPRRERHRSKSPR-RHRSRSRDRRHRSRSKSP 282


>gi|42740903 MTERF domain containing 2 [Homo sapiens]
          Length = 381

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 18/59 (30%)

Query: 613 EDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEE 671
           EDE DD  + N    ND D DDE                   + + ED+D++EDD +EE
Sbjct: 341 EDEDDDDEEDNDEDDNDEDDDDE------------------DDDEAEDNDEDEDDDEEE 381


>gi|157266334 tubby like protein 1 [Homo sapiens]
          Length = 542

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 633 DDELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQDP-AVLREKAEA 691
           D E   R P     V R     + +EE+++DEED+ +E   K +  +  P   LREK+ A
Sbjct: 94  DPEAKKRDPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEKKEKILLPPKKPLREKSSA 153

Query: 692 RRMAFLAK-KGYRHDSST----------AVAGSPRGHGQSRETTQERRKKEANK 734
                 AK +G R D  +              +P G G     T+++   EA+K
Sbjct: 154 DLKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADK 207


>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
          Length = 1812

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 576 DKRAVAAQRQRY-EQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTYDGNQVGANDADSDD 634
           DK   A  R+ Y E  S     VP Q G+      V  E + +   D + V   + + +D
Sbjct: 206 DKEEDAPHREDYFEPISPDRNSVP-QEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDED 264

Query: 635 ELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQ 680
           E   R   +IP+          +EE+D++EE + DEE    D + Q
Sbjct: 265 EDDRRTVDSIPE----------EEEEDEEEEGEEDEEGEGDDGYEQ 300


>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
          Length = 1147

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 576 DKRAVAAQRQRY-EQYSVVVEEVPLQPGESLPYHSVYYEDEYDDTYDGNQVGANDADSDD 634
           DK   A  R+ Y E  S     VP Q G+      V  E + +   D + V   + + +D
Sbjct: 206 DKEEDAPHREDYFEPISPDRNSVP-QEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDED 264

Query: 635 ELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEEAPKPDHFVQ 680
           E   R   +IP+          +EE+D++EE + DEE    D + Q
Sbjct: 265 EDDRRTVDSIPE----------EEEEDEEEEGEEDEEGEGDDGYEQ 300


>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
          Length = 1271

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 618 DTYDGNQVGANDADSDDELISRRPFTIPQV-LRTKVPREGQEEDDDDEEDDADEEAPKPD 676
           D+ +G   G+  + S  +  S++ F  P+V L   +  + Q+ D D+ +D  +EE     
Sbjct: 332 DSQEGT-FGSEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEV---- 386

Query: 677 HFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQER-RKKEANKA 735
            F Q+   +  ++ +R  +    +  R   S + +GS +   + R  ++ R RK++++++
Sbjct: 387 -FEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRS 445

Query: 736 TRANHNRRTMADRKRSKGMIP 756
             +    R     ++ KG+ P
Sbjct: 446 YSSERRAREREKERQKKGLPP 466


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 653  PREGQEEDDDDEEDDADEEAPKPDHFV--QDPAVLREKAEARRMAFLAKKGYR----HDS 706
            P+E +E +D D E+   E   + +H    Q      +  +A  +A  A +  +    H S
Sbjct: 5006 PQEEEEREDSDTEEQVPEALERKEHASCGQTGVENMQNTQAMELAGAAPEKEQGKEEHGS 5065

Query: 707  STAVAGSPRGHGQSRETTQERRKKEANKATRANHNRRTMADRKRSKG 753
              A A    GH +S    Q   +K   K T++   +   AD +RS G
Sbjct: 5066 GAADANQAEGH-ESNFIAQLASQKHTRKNTQSFKRKPGQADNERSMG 5111


>gi|115527076 src kinase associated phosphoprotein 1 isoform 2 [Homo
           sapiens]
          Length = 358

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 559 HKGKSTRKEENTRSLLNDKRAV-------AAQRQRYEQYSVVVEEVPLQPGESLPYHSVY 611
           H  + ++KE        D+R+        A  R   +Q S +++++      ++PY    
Sbjct: 167 HLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLS---SLTIPYEEDE 223

Query: 612 YEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDD-----DDEED 666
            E+E ++TYD      +  DS       RP  +P  +  K P E +EE+D      DEE 
Sbjct: 224 EEEEKEETYDD----IDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEH 279

Query: 667 DADEE 671
           D +E+
Sbjct: 280 DLEED 284


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 614 DEYDDTYDGNQVGANDADSDDELISR------RPFTIPQVLRTKVPREGQEED---DDDE 664
           D Y+++ DG     +  + D E +S           I  V R     +G E+D   D+DE
Sbjct: 223 DGYENSTDGEMCDKDALEEDSESVSEIGSDEESENEITSVGRASGDDDGSEDDEEEDEDE 282

Query: 665 EDDADEEAPKPDHFVQDPAVLREK 688
           E+D DE++   D     P + R K
Sbjct: 283 EEDEDEDSEDDDKSDSGPDLARGK 306


>gi|115527074 src kinase associated phosphoprotein 1 isoform 1 [Homo
           sapiens]
          Length = 359

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 559 HKGKSTRKEENTRSLLNDKRAV-------AAQRQRYEQYSVVVEEVPLQPGESLPYHSVY 611
           H  + ++KE        D+R+        A  R   +Q S +++++      ++PY    
Sbjct: 167 HLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLS---SLTIPYEEDE 223

Query: 612 YEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDD-----DDEED 666
            E+E ++TYD      +  DS       RP  +P  +  K P E +EE+D      DEE 
Sbjct: 224 EEEEKEETYDD----IDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEH 279

Query: 667 DADEE 671
           D +E+
Sbjct: 280 DLEED 284


>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
           isoform 1 [Homo sapiens]
          Length = 483

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 616 YDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKV--PREGQEEDDDDEEDDADEEAP 673
           + D +DG     N       ++   PF      +TK    + G  +DD +     +  A 
Sbjct: 110 FRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYAT 169

Query: 674 KPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKKEAN 733
             +     P  L E+ EA+    +AKK     ++  ++          E  +ERR++E  
Sbjct: 170 DNEKMTSTPETLLEEIEAKNRELIAKK-----TTPLLSFLKNKQRMREEKREERRRREIE 224

Query: 734 KATRANHNRRTMADRKRSK 752
           +  +    RR   + ++ K
Sbjct: 225 RKRQREEERRKWKEEEKRK 243


>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
          Length = 759

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 613 EDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDDDDEE------- 665
           +D+Y DT   + +G   +       S+   ++ +  R +   E +E DDDD++       
Sbjct: 192 KDKYKDTQSVSAIGEEKSHE-----SKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGV 246

Query: 666 -DDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETT 724
            DD DEE    +  V  P  ++++A  +R A      +  + S          G+    +
Sbjct: 247 FDDEDEEEENIESKVTKPVQIQKRA-VKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQS 305

Query: 725 QERRKKEANKATRANHNRR 743
               +++ +KA + ++ ++
Sbjct: 306 DTSTEEQEDKAVQVSNKKK 324


>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
           isoform 2 [Homo sapiens]
          Length = 470

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 616 YDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKV--PREGQEEDDDDEEDDADEEAP 673
           + D +DG     N       ++   PF      +TK    + G  +DD +     +  A 
Sbjct: 110 FRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYAT 169

Query: 674 KPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQSRETTQERRKKEAN 733
             +     P  L E+ EA+    +AKK     ++  ++          E  +ERR++E  
Sbjct: 170 DNEKMTSTPETLLEEIEAKNRELIAKK-----TTPLLSFLKNKQRMREEKREERRRREIE 224

Query: 734 KATRANHNRRTMADRKRSK 752
           +  +    RR   + ++ K
Sbjct: 225 RKRQREEERRKWKEEEKRK 243


>gi|21264343 scaffold attachment factor B [Homo sapiens]
          Length = 915

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 12/275 (4%)

Query: 420 IEEPNGEPNGVTVTAEA---VSQASSHPENSEEEECMGAAAAVGPAMCGVELDSLISQVK 476
           IE+  G P+ + +T+E     S+ SS     EEE                ++++ +  ++
Sbjct: 65  IEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQ 124

Query: 477 DLLPDLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSR 536
           D+  D+ +  +L   E  +      + +   + L  +LS     ++ EMK  P  L    
Sbjct: 125 DI--DIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQL--QE 180

Query: 537 HNVFQNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEE 596
           H +   +  +     S D + + + +    E     +L D      + +  ++ S  +E+
Sbjct: 181 HAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKIL-DILGETCKSEPVKEESSELEQ 239

Query: 597 VPLQPGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREG 656
              Q   S+       E+E  D +D       D D   E  +    +    L   V RE 
Sbjct: 240 PFAQDTSSVGPDRKLAEEE--DLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREP 297

Query: 657 QEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEA 691
            E+  D E  D +    +P   V+  +   E AEA
Sbjct: 298 AEQPGDGERTDCEPVGLEP--AVEQSSAASELAEA 330


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 653 PREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAG 712
           P EG+EE++  + DD +EE  + +  + DP V   +    R    ++KG   D + AVAG
Sbjct: 751 PPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGP--SEKGSSRDRAPAVAG 808

Query: 713 S-PRGHGQSR 721
           + P G   SR
Sbjct: 809 AFPLGLNSSR 818


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 653 PREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAG 712
           P EG+EE++  + DD +EE  + +  + DP V   +    R    ++KG   D + AVAG
Sbjct: 751 PPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGP--SEKGSSRDRAPAVAG 808

Query: 713 S-PRGHGQSR 721
           + P G   SR
Sbjct: 809 AFPLGLNSSR 818


>gi|239746067 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 653 PREGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAG 712
           P EG+EE++  + DD +EE  + +  + DP V   +    R    ++KG   D + AVAG
Sbjct: 751 PPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGP--SEKGSSRDRAPAVAG 808

Query: 713 S-PRGHGQSR 721
           + P G   SR
Sbjct: 809 AFPLGLNSSR 818


>gi|7657455 pescadillo homolog 1, containing BRCT domain [Homo
           sapiens]
          Length = 588

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 655 EGQEEDDDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSP 714
           E +EE+DD+ E D DEE    +   +D     EK E  R+A L ++         +AG+ 
Sbjct: 458 EEEEEEDDNNEGDGDEEGENEEE-EEDAEAGSEKEEEARLAALEEQRMEGKKPRVMAGTL 516

Query: 715 RGHGQSRETTQE 726
           +   + R   +E
Sbjct: 517 KLEDKQRLAQEE 528


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 13/114 (11%)

Query: 560 KGKSTRKEENTRSLLNDKRAVAAQRQRYEQY--SVVVEEVPLQPGESLPYHSVYYEDEYD 617
           K   TR EE+  S  +  R+V    +  +Q   S + EEV  Q  +S P H+     + D
Sbjct: 813 KEDMTRSEESISSGTSTARSVEEVEEENDQEMESFITEEVLGQQKKS-PLHA-----KMD 866

Query: 618 DTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEEDDDDEEDDADEE 671
           ++ +G+  G  +       + R     P +    V  +G+++++ +EED+ +EE
Sbjct: 867 ESKEGSIQGLEEMQ-----VEREGSLNPSLNEENVKGQGEKKEESEEEDEKEEE 915


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,483,389
Number of Sequences: 37866
Number of extensions: 1479316
Number of successful extensions: 10457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 9457
Number of HSP's gapped (non-prelim): 645
length of query: 757
length of database: 18,247,518
effective HSP length: 110
effective length of query: 647
effective length of database: 14,082,258
effective search space: 9111220926
effective search space used: 9111220926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.