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Search of human proteins with 20149563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
(398 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 788 0.0
gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens] 128 8e-30
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens] 128 8e-30
gi|38016911 stomatin isoform a [Homo sapiens] 128 1e-29
gi|7657615 podocin [Homo sapiens] 110 2e-24
gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens] 68 2e-11
gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens] 61 2e-09
gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens] 55 1e-07
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ... 54 3e-07
gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo s... 54 3e-07
gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo s... 54 3e-07
gi|30425406 hypothetical protein LOC140856 [Homo sapiens] 44 3e-04
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 34 0.20
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 34 0.27
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 33 0.59
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 33 0.59
gi|5031699 flotillin 1 [Homo sapiens] 32 0.77
gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens] 32 0.77
gi|19913396 smoothelin isoform b [Homo sapiens] 32 1.0
gi|19913394 smoothelin isoform c [Homo sapiens] 32 1.0
gi|25121980 dispatched B [Homo sapiens] 32 1.3
gi|19913398 smoothelin isoform a [Homo sapiens] 32 1.3
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 30 2.9
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 30 2.9
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 30 3.8
gi|166851840 E74-like factor 3 (ets domain transcription factor,... 30 3.8
gi|167235023 E74-like factor 3 (ets domain transcription factor,... 30 3.8
gi|210147462 von Willebrand factor A domain containing 5B1 [Homo... 30 3.8
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 30 3.8
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 30 3.8
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 788 bits (2036), Expect = 0.0
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGGVGTGADVPQSWPSCLCHGLIS 60
MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGGVGTGADVPQSWPSCLCHGLIS
Sbjct: 1 MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGGVGTGADVPQSWPSCLCHGLIS 60
Query: 61 FLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLR 120
FLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLR
Sbjct: 61 FLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLR 120
Query: 121 TRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLK 180
TRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLK
Sbjct: 121 TRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLK 180
Query: 181 RPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPAGPNLDSTLQ 240
RPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPAGPNLDSTLQ
Sbjct: 181 RPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPAGPNLDSTLQ 240
Query: 241 QLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQP 300
QLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQP
Sbjct: 241 QLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQP 300
Query: 301 FLSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLR 360
FLSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLR
Sbjct: 301 FLSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLR 360
Query: 361 ALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK 398
ALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK
Sbjct: 361 ALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK 398
>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
Length = 282
Score = 128 bits (322), Expect = 8e-30
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 54 LCHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQ--GPGMVLLLPFI 111
+C ++ L FLL+++TFPIS W LKI+ YER +VFRLGRI+ + GPG++L+LP I
Sbjct: 17 VCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCI 76
Query: 112 DSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQ 171
D F +VDLRT N+PP ++ ++D V V +RI+ V +V V D++ AT + AQ
Sbjct: 77 DVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQ 136
Query: 172 NAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
+ L + L +I + +I+ + ++D T WG+ V RVE+
Sbjct: 137 TTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEI 182
>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
Length = 291
Score = 128 bits (322), Expect = 8e-30
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 54 LCHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQ--GPGMVLLLPFI 111
+C ++ L FLL+++TFPIS W LKI+ YER +VFRLGRI+ + GPG++L+LP I
Sbjct: 26 VCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCI 85
Query: 112 DSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQ 171
D F +VDLRT N+PP ++ ++D V V +RI+ V +V V D++ AT + AQ
Sbjct: 86 DVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQ 145
Query: 172 NAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
+ L + L +I + +I+ + ++D T WG+ V RVE+
Sbjct: 146 TTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEI 191
>gi|38016911 stomatin isoform a [Homo sapiens]
Length = 288
Score = 128 bits (321), Expect = 1e-29
Identities = 62/165 (37%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
C ++ FL ++TFPIS W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 30 CGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 89
Query: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 90 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 149
Query: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
+ L + L +I ++ +I+ + ++D T AWG++V+RVE+
Sbjct: 150 TLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEI 194
>gi|7657615 podocin [Homo sapiens]
Length = 383
Score = 110 bits (276), Expect = 2e-24
Identities = 52/165 (31%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
C L+ + L +++TFP S WF +K+V YER+I+FRLG + +GPG+ LP +D
Sbjct: 101 CEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD 160
Query: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
++ +VDLR + +P ++ +KD ++ + A +R+ + L + ++ ++ A + Q
Sbjct: 161 TYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQT 220
Query: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
M + L R L EI +E+ I+ + ++ VT WG++V+R+E+
Sbjct: 221 TMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEI 265
>gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]
Length = 418
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 286 PKQPLAEGLLTALQPFLSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPD 345
P+ E ++ LS+ +V A Y F + G +FLDL + G VG+G P
Sbjct: 305 PRSGAVEETFRIVKDSLSDDVVKATQAIYLFELSGEDG--GTWFLDLKSKGGNVGYGEPS 362
Query: 346 GIPDVVVEMAEADLRALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRAL 397
DVV+ M D + +L+P A+MSG+LK+KG++A+A+KLE ++ +
Sbjct: 363 DQADVVMSMTTDDFVKMFSGKLKPTMAFMSGKLKIKGNMALAIKLEKLMNQM 414
>gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens]
Length = 356
Score = 60.8 bits (146), Expect = 2e-09
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLASKDGAVLS 140
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 41 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 100
Query: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 101 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 160
Query: 201 INDVTRAWGLEVDRVEL 217
IN WG+ R E+
Sbjct: 161 INQAADCWGIRCLRYEI 177
>gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens]
Length = 736
Score = 54.7 bits (130), Expect = 1e-07
Identities = 24/90 (26%), Positives = 52/90 (57%)
Query: 306 LVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRALLCR 365
+V +V A +++++ + + +DL +G G+V G G D + +++ D ++
Sbjct: 642 VVKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLG 701
Query: 366 ELRPLGAYMSGRLKVKGDLAMAMKLEAVLR 395
+L P A+ SGRLK +G++ ++ KL+ +L+
Sbjct: 702 KLDPQKAFFSGRLKARGNIMLSQKLQMILK 731
>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
sapiens]
Length = 547
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 304 EALVSQVGACYQFNVVL-PSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRAL 362
E V ++G + F V P G ++ + +D+ G+G V D D + MA++D AL
Sbjct: 449 EQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPN-SDKKADCTITMADSDFLAL 507
Query: 363 LCRELRPLGAYMSGRLKVKGDLAMAMKLE 391
+ ++ P A+ G+LK+ G++ +AMKL+
Sbjct: 508 MTGKMNPQSAFFQGKLKITGNMGLAMKLQ 536
>gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
sapiens]
Length = 140
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 304 EALVSQVGACYQFNVVL-PSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRAL 362
E V ++G + F V P G ++ + +D+ G+G V D D + MA++D AL
Sbjct: 42 EQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPN-SDKKADCTITMADSDFLAL 100
Query: 363 LCRELRPLGAYMSGRLKVKGDLAMAMKLE 391
+ ++ P A+ G+LK+ G++ +AMKL+
Sbjct: 101 MTGKMNPQSAFFQGKLKITGNMGLAMKLQ 129
>gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
sapiens]
Length = 143
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 304 EALVSQVGACYQFNVVL-PSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRAL 362
E V ++G + F V P G ++ + +D+ G+G V D D + MA++D AL
Sbjct: 45 EQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPN-SDKKADCTITMADSDFLAL 103
Query: 363 LCRELRPLGAYMSGRLKVKGDLAMAMKLE 391
+ ++ P A+ G+LK+ G++ +AMKL+
Sbjct: 104 MTGKMNPQSAFFQGKLKITGNMGLAMKLQ 132
>gi|30425406 hypothetical protein LOC140856 [Homo sapiens]
Length = 156
Score = 43.5 bits (101), Expect = 3e-04
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 306 LVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIP-DVVVEMAEADLRALLC 364
LV +V A +Q ++ T + +DL G G + G P +P D V + E+ L+
Sbjct: 62 LVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPG-PARLPADTVFTIPESVFMELVL 120
Query: 365 RELRPLGAYMSGRLKVKGDLAMAMKLEAVLR 395
++ P A+++G+ KV G + ++ KLE V +
Sbjct: 121 GKMNPQKAFLAGKFKVSGKVLLSWKLERVFK 151
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 34.3 bits (77), Expect = 0.20
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 179 LKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPAGPNL--- 235
+K R+++ E L IS +L+ + D+ RA LE ++ L+ A +P +P GPN
Sbjct: 954 VKMEARKLEAESLNIS-KLMAKAEDLRRA--LEEEKAYLSSRARPRPGGPAP-GPNTGLG 1009
Query: 236 -------------DSTLQQLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGA 282
D+ +QQL G + S + P P D + S+ + P P G
Sbjct: 1010 QVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPEYGDFQPVSSDPKSPWPACGP 1069
Query: 283 RSSPKQPL 290
R+ PL
Sbjct: 1070 RNGLVGPL 1077
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 33.9 bits (76), Expect = 0.27
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 218 AVEAVLQPPQDSPAGPNLDSTLQQLALHFLGGS-----MNSMAGGAPSPGPADTVEMVSE 272
A A PP+ A L L QL+ LGG+ + GA + G AD
Sbjct: 42 AAPAPRPPPEPDDAAAALRLALDQLSALGLGGAGDTDEEGAAGDGAAAAGGADGGAAPEP 101
Query: 273 VEPPAPQVGARSSPKQPLAEGLLTALQP 300
V P P+ GA + +A G L L P
Sbjct: 102 VPPDGPEAGAPPTLAPAVAPGSLPLLDP 129
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 226 PQDSPAGPNLDSTLQQLA-----LHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQV 280
P PAGP L L + GG + +A SP + E V PAPQ
Sbjct: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
Query: 281 GARSSPKQP 289
A KQP
Sbjct: 661 PAPQERKQP 669
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 226 PQDSPAGPNLDSTLQQLA-----LHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQV 280
P PAGP L L + GG + +A SP + E V PAPQ
Sbjct: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
Query: 281 GARSSPKQP 289
A KQP
Sbjct: 661 PAPQERKQP 669
>gi|5031699 flotillin 1 [Homo sapiens]
Length = 427
Score = 32.3 bits (72), Expect = 0.77
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 103 GMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRI 149
G V +LP I QR+ L T NV K+ ++ G +SV Q +I
Sbjct: 27 GRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQVKI 73
>gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 0.77
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 199 LEINDVTRAWGLEVDRVELAVEAVLQPPQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGA 258
L +N V +A + L + + Q+ A LQQL L + ++NS G
Sbjct: 106 LHLNSVVKACKHYLTTRTLPMSPPSERVQEQSARMQRSFMLQQLGLSIVSSALNSSQNGE 165
Query: 259 PSPGPADTVEMVSEVEPPAPQVGAR-SSPKQPLAEGLLTALQPFLSEALVSQV 310
P P + M S ++ P R KQ E L+P + E+ +S V
Sbjct: 166 EQPAPMSS-SMRSNLDQRTPFPMRRLHKRKQSAEERARQRLRPSIDESAISDV 217
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 32.0 bits (71), Expect = 1.0
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 226 PQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARS- 284
PQ+SP P ST Q+ L G + A +P+ GP+DT ++V P P + S
Sbjct: 248 PQESPTLP---STEGQVVNKLLSGPKETPAAQSPTRGPSDTKR--ADVAGPRPCQRSLSV 302
Query: 285 -SPKQP 289
SP+QP
Sbjct: 303 LSPRQP 308
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 213 DRVELAVEAVLQPPQDSPAGPNLDSTLQQLALHFLGGSMNSM-AGGAPSPGPADTVEMVS 271
+R E +A + P +P G + D T L L GS +S A + SP PA +
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 272 EVEPPAPQVGARSSPKQPLAEGLLTALQPFLSEALVSQVG 311
E SP+ P + T+ +P S L S G
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 32.0 bits (71), Expect = 1.0
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 226 PQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARS- 284
PQ+SP P ST Q+ L G + A +P+ GP+DT ++V P P + S
Sbjct: 248 PQESPTLP---STEGQVVNKLLSGPKETPAAQSPTRGPSDTKR--ADVAGPRPCQRSLSV 302
Query: 285 -SPKQP 289
SP+QP
Sbjct: 303 LSPRQP 308
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 213 DRVELAVEAVLQPPQDSPAGPNLDSTLQQLALHFLGGSMNSM-AGGAPSPGPADTVEMVS 271
+R E +A + P +P G + D T L L GS +S A + SP PA +
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 272 EVEPPAPQVGARSSPKQPLAEGLLTALQPFLSEALVSQVG 311
E SP+ P + T+ +P S L S G
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 248 GGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARSS 285
G S +S G P+PGP E E EP AP G+ S
Sbjct: 3 GDSSSSSGGSGPAPGPGPEGEQRPEGEPLAPDGGSPDS 40
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 213 DRVELAVEAVLQPPQDSPAGPNLDSTLQQLALHFLGGSMNSM-AGGAPSPGPADTVEMVS 271
+R E +A + P +P G + D T L L GS +S A + SP PA +
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 272 EVEPPAPQVGARSSPKQPLAEGLLTALQPFLSEALVSQVG 311
E SP+ P + T+ +P S L S G
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 226 PQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGAPSPGPADTVEMVSEVEPPAPQVGARS- 284
PQ+SP P ST Q+ L G + A +P GP+DT ++V P P + S
Sbjct: 248 PQESPTLP---STEGQVVNKLLSGPKETPAAQSPHRGPSDTKR--ADVAGPRPCQRSLSV 302
Query: 285 -SPKQP 289
SP+QP
Sbjct: 303 LSPRQP 308
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.4 bits (67), Expect = 2.9
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 30/120 (25%)
Query: 220 EAVLQPPQDS---PAGPNLD--------STLQQL----------------ALHFLGGSMN 252
EA + PP DS PA P+LD S+LQ +L F G
Sbjct: 2143 EAHVSPPLDSHLGPARPSLDFPASAFGFSSLQPAPPQLPSPAEPRSAPCGSLAFSGDRAL 2202
Query: 253 SMAGGAPSPGPADT---VEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQPFLSEALVSQ 309
++A G P+ D V ++ PQ+ + SSP PL L P LSE S+
Sbjct: 2203 ALAPGPPTRTRHDEYLEVTKAPSLDSSLPQLPSPSSPGAPLLSNLPRPASPALSEGSSSE 2262
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 259 PSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEG 293
P+PGPA +V+ V PPA + + P PL G
Sbjct: 33 PAPGPAHRPPLVTAVVPPAGPLVLSAFPSTPLVAG 67
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 30.0 bits (66), Expect = 3.8
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 224 QPPQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGAPSP--GPADTVEMVSEV----EPPA 277
QP Q P P Q H + S++++ G+P P G A TV + EP +
Sbjct: 385 QPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVS 444
Query: 278 PQVGARSSPKQPLAEGLLTALQPFLSEALVSQVGACYQ 315
P +P P + A +P + L S G Y+
Sbjct: 445 PSRERSPAPPPP---AVFPAARPEPGDGLSSPAGGSYE 479
>gi|166851840 E74-like factor 3 (ets domain transcription factor,
epithelial-specific ) [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 3.8
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 183 LREIQMEKLKISDQLLLEINDVTRA------WGLEV-DRVELAVEAVLQP---PQDSPAG 232
L E+++ + DQL ++ D+T + W +E+ ++ +A + L P Q SP
Sbjct: 107 LEELRLVFGPLGDQLHAQLRDLTSSSSDELSWIIELLEKDGMAFQEALDPGPFDQGSPFA 166
Query: 233 PNLDSTLQQLALHFLGGSMNSMAGGAPSPGPAD 265
L QQ + + G S GAPSPG +D
Sbjct: 167 QELLDDGQQASPYHPG----SCGAGAPSPGSSD 195
>gi|167235023 E74-like factor 3 (ets domain transcription factor,
epithelial-specific ) [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 3.8
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 183 LREIQMEKLKISDQLLLEINDVTRA------WGLEV-DRVELAVEAVLQP---PQDSPAG 232
L E+++ + DQL ++ D+T + W +E+ ++ +A + L P Q SP
Sbjct: 107 LEELRLVFGPLGDQLHAQLRDLTSSSSDELSWIIELLEKDGMAFQEALDPGPFDQGSPFA 166
Query: 233 PNLDSTLQQLALHFLGGSMNSMAGGAPSPGPAD 265
L QQ + + G S GAPSPG +D
Sbjct: 167 QELLDDGQQASPYHPG----SCGAGAPSPGSSD 195
>gi|210147462 von Willebrand factor A domain containing 5B1 [Homo
sapiens]
Length = 1215
Score = 30.0 bits (66), Expect = 3.8
Identities = 47/177 (26%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 158 TVKDLNTATRMTAQ--NAMT--KALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVD 213
T DLN + R A N +T K L + + M K + D+T L+V
Sbjct: 645 TKHDLNLSQRRRAYSTNQITNHKPLPRATMASDPMPAAKRYPLRKARLQDLTNQTSLDVQ 704
Query: 214 RVELAVEAVLQPPQDSPAGPNL-------DSTLQQLALHFLGGSMNSMA--------GGA 258
R ++ ++ +L QD GP L S L Q FL + A +
Sbjct: 705 RWQIDLQPLLNSGQDLNQGPKLRGPGARRPSLLPQGCQPFLPWGQETQAWSPVRERTSDS 764
Query: 259 PSPG--------PADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQPFLSEALV 307
SPG A E S+ +PPA + R+SP +P P L +ALV
Sbjct: 765 RSPGDLEPSHHPSAFETETSSDWDPPA-ESQERASPSRPATPA------PVLGKALV 814
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 161 DLNTATRMTAQNAMTKALLKRPLREI----QMEKLKISDQLLLEINDVTRAWGLEVDRVE 216
D+ T +A+ K + LR+I + EK + DQL+ + D+ + +E+ V
Sbjct: 388 DMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKSVR 447
Query: 217 LAVEA 221
+VEA
Sbjct: 448 SSVEA 452
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 3.8
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 206 RAWGLEVDRVELAV-----EAVLQPPQDSPAGPNLDSTLQQLALHFLGGSMNSMAGGAPS 260
RA GL D + V + V P Q P L + ++ A ++ + AP+
Sbjct: 208 RASGLGADPAQAVVSPGQGDGVPGPAQAFPGHLPLPTKVEAKAPETPSENLRTGLELAPA 267
Query: 261 PGPADTVEMVSEVEPPAPQVGARSSP-KQPLAEGLLTALQP 300
PG + V EV P A Q + S P +PL EG T L P
Sbjct: 268 PGRVNVVSPSLEVAPGAGQGASSSRPDPEPLEEG--TRLTP 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,369,438
Number of Sequences: 37866
Number of extensions: 744687
Number of successful extensions: 2790
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2750
Number of HSP's gapped (non-prelim): 71
length of query: 398
length of database: 18,247,518
effective HSP length: 104
effective length of query: 294
effective length of database: 14,309,454
effective search space: 4206979476
effective search space used: 4206979476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.