Guide to the Human Genome
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Name: FLOT1 Sequence: fasta or formatted (427aa) NCBI GI: 5031699
Description:

flotillin 1

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         58           3
 C cysteine            0.9          4           1
 D aspartate           3.0         13           2
 E glutamate          10.5         45           2
 F phenylalanine       2.1          9           2
 G glycine             4.9         21           2
 H histidine           1.6          7           1
 I isoleucine          5.6         24           1
 K lysine              7.0         30           2
 L leucine             7.5         32           2
 M methionine          3.3         14           1
 N asparagine          1.9          8           1
 P proline             2.3         10           2
 Q glutamine           8.4         36           2
 R arginine            6.6         28           2
 S serine              5.4         23           2
 T threonine           4.4         19           1
 V valine              8.4         36           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   flotillin 1 
FLOT2                 0.452   flotillin 2 
PLEC1                 0.047   plectin 1 isoform 11 
PLEC1                 0.047   plectin 1 isoform 10 
PLEC1                 0.047   plectin 1 isoform 8 
PLEC1                 0.047   plectin 1 isoform 7 
PLEC1                 0.047   plectin 1 isoform 6 
PLEC1                 0.047   plectin 1 isoform 3 
PLEC1                 0.047   plectin 1 isoform 2 
PLEC1                 0.047   plectin 1 isoform 1 
MYH2                  0.045   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.045   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.040   myosin, heavy chain 1, skeletal muscle, adult [Homo...
STOML2                0.038   stomatin (EPB72)-like 2 
MYH4                  0.037   myosin, heavy polypeptide 4, skeletal muscle 
MYH6                  0.037   myosin heavy chain 6 
CALD1                 0.037   caldesmon 1 isoform 1 
MYH13                 0.036   myosin, heavy polypeptide 13, skeletal muscle [Homo...
INCENP                0.036   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.036   inner centromere protein antigens 135/155kDa isofor...
GIGYF2                0.036   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.036   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.036   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.036   GRB10 interacting GYF protein 2 isoform b 
MYH7                  0.034   myosin, heavy chain 7, cardiac muscle, beta 
CCDC18                0.032   sarcoma antigen NY-SAR-41 
STOM                  0.032   stomatin isoform a 
CEP250                0.031   centrosomal protein 2 
STOML3                0.029   stomatin-like 3 isoform 2 
STOML3                0.029   stomatin-like 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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