Guide to the Human Genome
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Name: VWA5B1 Sequence: fasta or formatted (1215aa) NCBI GI: 210147462
Description:

von Willebrand factor A domain containing 5B1

Referenced in:

polyADP-Ribose Polymerase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        100           3
 C cysteine            1.9         23           1
 D aspartate           4.1         50           2
 E glutamate           5.9         72           1
 F phenylalanine       3.7         45           1
 G glycine             6.8         83           2
 H histidine           3.0         37           2
 I isoleucine          3.9         47           3
 K lysine              4.7         57           3
 L leucine            10.5        127           2
 M methionine          2.1         26           1
 N asparagine          3.5         42           2
 P proline             7.0         85           2
 Q glutamine           4.1         50           2
 R arginine            5.8         71           3
 S serine             10.0        122           3
 T threonine           6.0         73           2
 V valine              5.5         67           2
 W tryptophan          1.6         19           1
 Y tyrosine            1.6         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor A domain containing 5B1 [Homo... 
VWA5B2                0.209   von Willebrand factor A domain containing 5B2 [Homo...
VWA5A                 0.082   BCSC-1 isoform 1 
VWA5A                 0.082   BCSC-1 isoform 1 
VWA5A                 0.057   BCSC-1 isoform 2 
PARP4                 0.033   poly (ADP-ribose) polymerase family, member 4 [Homo...
ITIH5                 0.018   inter-alpha trypsin inhibitor heavy chain precursor ...
ITIH5                 0.018   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.018   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH1                 0.016   inter-alpha (globulin) inhibitor H1 
ITIH4                 0.012   inter-alpha (globulin) inhibitor H4 
ITIH2                 0.009   inter-alpha globulin inhibitor H2 polypeptide 
ITIH3                 0.009   inter-alpha (globulin) inhibitor H3 preproprotein [...
ITIH5L                0.009   inter-alpha (globulin) inhibitor H5-like 
LACTB                 0.007   lactamase, beta isoform a 
LACTB                 0.007   lactamase, beta isoform b 
LCP2                  0.006   lymphocyte cytosolic protein 2 
TBX2                  0.005   T-box 2 
MAP1A                 0.005   microtubule-associated protein 1A 
STK10                 0.005   serine/threonine kinase 10 
COL6A6                0.005   collagen type VI alpha 6 
COBL                  0.004   cordon-bleu homolog 
GP1BA                 0.004   platelet glycoprotein Ib alpha polypeptide precurso...
CUX1                  0.004   cut-like homeobox 1 isoform a 
SMARCC2               0.004   SWI/SNF-related matrix-associated actin-dependent re...
ARMC2                 0.004   armadillo repeat containing 2 
APBB1                 0.003   amyloid beta A4 precursor protein-binding, family B, ...
APBB1                 0.003   amyloid beta A4 precursor protein-binding, family B,...
ANKRD11               0.003   ankyrin repeat domain 11 
CDC2L5                0.003   cell division cycle 2-like 5 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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