Guide to the Human Genome
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Name: EFHD1 Sequence: fasta or formatted (239aa) NCBI GI: 20149496
Description:

EF-hand domain family, member D1

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         31           3
 C cysteine            0.8          2           1
 D aspartate           5.0         12           1
 E glutamate          13.8         33           4
 F phenylalanine       5.9         14           2
 G glycine             5.0         12           1
 H histidine           0.8          2           1
 I isoleucine          2.5          6           1
 K lysine              7.9         19           1
 L leucine            12.1         29           2
 M methionine          2.9          7           2
 N asparagine          2.1          5           1
 P proline             5.9         14           2
 Q glutamine           3.3          8           1
 R arginine            8.4         20           2
 S serine              5.9         14           2
 T threonine           1.7          4           1
 V valine              2.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand domain family, member D1 
EFHD2                 0.610   EF-hand domain family, member D2 
AIF1L                 0.070   ionized calcium binding adapter molecule 2 isoform 1...
CETN2                 0.066   caltractin 
CETN1                 0.066   centrin 1 
TNNC1                 0.061   troponin C, slow 
AIF1                  0.059   allograft inflammatory factor 1 isoform 3 
AIF1                  0.057   allograft inflammatory factor 1 isoform 1 
TNNC2                 0.057   fast skeletal muscle troponin C 
CALML5                0.052   calmodulin-like 5 
CALM3                 0.050   calmodulin 3 
CALM2                 0.050   calmodulin 2 
CALM1                 0.050   calmodulin 1 
CALML3                0.048   calmodulin-like 3 
MYL9                  0.045   myosin regulatory light chain 9 isoform a 
AIF1                  0.043   allograft inflammatory factor 1 isoform 2 
CABP7                 0.043   calcium binding protein 7 
MYL12B                0.043   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.043   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.043   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.043   myosin regulatory light chain MRCL2 isoform A 
CABP1                 0.041   calcium binding protein 1 isoform 3 
CABP1                 0.041   calcium binding protein 1 isoform 2 
CABP1                 0.041   calcium binding protein 1 isoform 1 
MYL12A                0.041   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL5                  0.041   myosin regulatory light chain 5 
CETN3                 0.041   centrin 3 
CALML6                0.036   calmodulin-like 6 
CALN1                 0.034   calneuron 1 isoform 2 
CALN1                 0.034   calneuron 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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