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Search of human proteins with 20143962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 499 e-142
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 305 2e-83
gi|82659115 distal-less homeobox 6 [Homo sapiens] 161 4e-40
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 156 2e-38
gi|4885185 distal-less homeobox 3 [Homo sapiens] 124 7e-29
gi|4758168 distal-less homeobox 2 [Homo sapiens] 122 2e-28
gi|4885187 distal-less homeobox 5 [Homo sapiens] 117 7e-27
gi|118582284 msh homeobox 1 [Homo sapiens] 89 3e-18
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 87 2e-17
gi|121114296 caudal type homeobox 1 [Homo sapiens] 80 2e-15
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 79 3e-15
gi|27886557 msh homeobox 2 [Homo sapiens] 78 6e-15
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 77 1e-14
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 77 1e-14
gi|147901462 brain specific homeobox [Homo sapiens] 76 2e-14
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 75 5e-14
gi|19923352 NK3 homeobox 1 [Homo sapiens] 74 9e-14
gi|226437602 NK1 homeobox 2 [Homo sapiens] 74 1e-13
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 74 1e-13
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 74 1e-13
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 74 1e-13
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 74 1e-13
gi|31377777 NK2 homeobox 8 [Homo sapiens] 74 1e-13
gi|4502365 NK3 homeobox 2 [Homo sapiens] 74 1e-13
gi|24497513 homeobox A3 isoform a [Homo sapiens] 73 3e-13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 73 3e-13
gi|89257348 homeo box HB9 [Homo sapiens] 72 4e-13
gi|7710121 engrailed homeobox 2 [Homo sapiens] 71 7e-13
gi|70608170 H6 family homeobox 2 [Homo sapiens] 70 1e-12
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 70 1e-12
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 499 bits (1285), Expect = e-142
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT 60
MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT
Sbjct: 1 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT 60
Query: 61 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP 120
EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP
Sbjct: 61 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP 120
Query: 121 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS 180
RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS
Sbjct: 121 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS 180
Query: 181 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 240
GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
Sbjct: 181 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 240
>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
Length = 168
Score = 305 bits (781), Expect = 2e-83
Identities = 154/174 (88%), Positives = 155/174 (89%), Gaps = 11/174 (6%)
Query: 70 LSCQQPAALSQP---LCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS 126
LS P +L P LC P DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS
Sbjct: 3 LSVLPPRSLLAPYTVLCCPP--------DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS 54
Query: 127 LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD 186
LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD
Sbjct: 55 LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD 114
Query: 187 FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 240
FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
Sbjct: 115 FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 168
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 161 bits (408), Expect = 4e-40
Identities = 106/262 (40%), Positives = 139/262 (53%), Gaps = 22/262 (8%)
Query: 1 MTSLPCPLPGRDASKAVFPDLAPV------PSVAAA-YPLGLSPTTAASPNLS------- 46
MT++ L G+D+SK+ F + P++A A YPL + AA+
Sbjct: 4 MTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHHHHH 63
Query: 47 ----YSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLS 102
+ PY Y + Y+S Q + Q + Q D+++ + +
Sbjct: 64 QHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQKTT 123
Query: 103 P-EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161
E E R KK+RKPRTIYSSLQLQ LN RFQ TQYLALPERA+LAA LGLTQTQV
Sbjct: 124 VIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQV 183
Query: 162 KIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL---PKAGTLPTSGY 218
KIWFQNKRSK+KKLLKQ S E D + ++SP SP LP +WD+ K ++P + Y
Sbjct: 184 KIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSY 243
Query: 219 GNSFGAWYQHHSSDVLASPQMM 240
+ WY D + PQMM
Sbjct: 244 MPGYSHWYSSPHQDTMQRPQMM 265
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 156 bits (394), Expect = 2e-38
Identities = 109/261 (41%), Positives = 137/261 (52%), Gaps = 29/261 (11%)
Query: 1 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLG--------------LSPTTAASPNLS 46
MT++P L + KAVF + P + P+ P A S S
Sbjct: 3 MTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASS 62
Query: 47 YSRPYGHLLSYPYTEPANPGDS--YLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPE 104
+SRP G YPY + S Y+S Q S L ++ ADSEK + E
Sbjct: 63 FSRPLG----YPYVNSVSSHASSPYISSVQSYPGSASLA--QSRLEDPGADSEKSTVV-E 115
Query: 105 PSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIW 164
E R KK+RKPRTIYSSLQLQ LN+RFQ TQYLALPERA+LAA LGLTQTQVKIW
Sbjct: 116 GGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIW 175
Query: 165 FQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSG-----YG 219
FQNKRSK+KKL+KQ EG ++S SPP+P W+ P + + SG Y
Sbjct: 176 FQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWN-PNSSSGKGSGGNAGSYI 234
Query: 220 NSFGAWYQHHSSDVLASPQMM 240
S+ +WY + + PQ+M
Sbjct: 235 PSYTSWYPSAHQEAMQQPQLM 255
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 124 bits (311), Expect = 7e-29
Identities = 83/179 (46%), Positives = 98/179 (54%), Gaps = 28/179 (15%)
Query: 34 GLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELE 93
GL+ T A SP Y+ G SY Q A QPL PA+ P ++
Sbjct: 73 GLAGTGAYSPKSEYTY----------------GASYR--QYGAYREQPL--PAQDPVSVK 112
Query: 94 ADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQ 153
+ PE R KK+RKPRTIYSS QL L +RFQ QYLALPERA+LAAQ
Sbjct: 113 EE-------PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQ 165
Query: 154 LGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 212
LGLTQTQVKIWFQN+RSK+KKL K E P + S++ SPP P+LWD T
Sbjct: 166 LGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 122 bits (307), Expect = 2e-28
Identities = 78/165 (47%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 50 PYGHLLSYPYTE------PANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSP 103
PY H+ SY Y P + SY A S G + P A++E +
Sbjct: 83 PYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTSSSP----ANNEPEKEDL 138
Query: 104 EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 163
EP R KK+RKPRTIYSS QL L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 139 EPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 198
Query: 164 WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPL--PSLWD 206
WFQN+RSK+KK+ K E PG + S SPP+ P+ WD
Sbjct: 199 WFQNRRSKFKKMWKSGEIPSE-QHPGASASPPCASPPVSAPASWD 242
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 117 bits (294), Expect = 7e-27
Identities = 67/145 (46%), Positives = 83/145 (57%), Gaps = 16/145 (11%)
Query: 104 EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 163
EP R KK+RKPRTIYSS QL L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 124 EPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 183
Query: 164 WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWD---------------LP 208
WFQNKRSK KK++K E P + ++ SP P++W+ P
Sbjct: 184 WFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPP 242
Query: 209 KAGTLPTSGYGNSFGAWYQHHSSDV 233
+ P S Y + +WY +S +
Sbjct: 243 TSNQSPASSYLENSASWYTSAASSI 267
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 89.0 bits (219), Expect = 3e-18
Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 37/204 (18%)
Query: 21 LAPVPSVAAA----YPLGLSPTTAASPNLSYS-RPYGHLLSYPYTEPANPGDSYLSCQQP 75
LAP V AA PLG+ P + +P+ S RP GH S
Sbjct: 80 LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHF----------------SVGGL 123
Query: 76 AALSQPLCGPAEHPQELEADS--EKPRLSPEPSERRPQAPA------KKLRKPRTIYSSL 127
L + AE P++ E + PR SP P+ RR PA K RKPRT +++
Sbjct: 124 LKLPEDALVKAESPEKPERTPWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTA 182
Query: 128 QLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDF 187
QL L ++F+ QYL++ ERA+ ++ L LT+TQVKIWFQN+R+K K+L QE +
Sbjct: 183 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAEL 235
Query: 188 PGRTFSVSPCSPPLPSLWDLPKAG 211
+ P PP P G
Sbjct: 236 EKLKMAAKPMLPPAAFGLSFPLGG 259
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 86.7 bits (213), Expect = 2e-17
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 31/182 (17%)
Query: 36 SPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSY-LSCQQPAALSQPLCGPAEHPQELEA 94
SP+ A P LS ++S+ PA PG + LSC Q +++ + A + L A
Sbjct: 64 SPSLRAYPLLSVITRQPTVISH--LVPATPGIAQALSCHQ---VTEAVSAEAPGGEAL-A 117
Query: 95 DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQL 154
SE P P +++P R+ RTI++ LQL L ++FQ +YL+ P+R LA L
Sbjct: 118 SSESETEQPTPRQKKP-------RRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSL 170
Query: 155 GLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLP 214
GLTQ QVK W+QN+R K+KK++ + GGQE +P P PK ++P
Sbjct: 171 GLTQLQVKTWYQNRRMKWKKMVLK--GGQE----------APTKPK-----GRPKKNSIP 213
Query: 215 TS 216
TS
Sbjct: 214 TS 215
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 79.7 bits (195), Expect = 2e-15
Identities = 67/212 (31%), Positives = 96/212 (45%), Gaps = 20/212 (9%)
Query: 5 PCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTEPAN 64
P P P A A FP AP AAAY G + A+ +L++ P P P
Sbjct: 53 PAPAPPT-AWGAPFP--APKDDWAAAYGPGPAAPAASPASLAFGPPPDFS---PVPAPPG 106
Query: 65 PGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKP----RLSPEPSERRPQAPAKKLRKP 120
PG P L+QPL GP P A P R S + K
Sbjct: 107 PG--------PGLLAQPLGGPGT-PSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKY 157
Query: 121 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS 180
R +Y+ Q L + F +++Y+ + +++LAA LGLT+ QVKIWFQN+R+K +K+ K+
Sbjct: 158 RVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQ 217
Query: 181 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 212
Q+ P ++ +P PSL L + T
Sbjct: 218 QQQQPPQPPMAHDIT-ATPAGPSLGGLCPSNT 248
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 79.0 bits (193), Expect = 3e-15
Identities = 69/201 (34%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 22 APVPSVAAAYPL---GLSPTTAASPNLSYSRPYGHLLSYPYTEPANP-GDSYLSCQQPAA 77
AP + AAA L G+ AA P S+ + + P P G S LS AA
Sbjct: 45 APAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAA 104
Query: 78 -LSQPLCGPAEH-PQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQR 135
P A H P EL+ + P P AKK R+ RT+++ LQL L +R
Sbjct: 105 GPGLPGAAGAPHLPLELQLRGKLEAAGPG----EPGTKAKKGRRSRTVFTELQLMGLEKR 160
Query: 136 FQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVS 195
F+ +YL+ P+R LA LGL+Q QVK W+QN+R K+KK++ Q G + S
Sbjct: 161 FEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLE-----------S 209
Query: 196 PCSPPLPSLWDLPKAGTLPTS 216
P P PK ++PTS
Sbjct: 210 PTKPK-----GRPKKNSIPTS 225
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 78.2 bits (191), Expect = 6e-15
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 97 EKPRLSPEPSERRPQAPA----KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAA 152
E R SP P P K RKPRT +++ QL L ++F+ QYL++ ERA+ ++
Sbjct: 118 EPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSS 177
Query: 153 QLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 212
L LT+TQVKIWFQN+R+K K+L QE + + P LPS + LP +
Sbjct: 178 SLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPM---LPSSFSLPFPIS 227
Query: 213 LPTSGYGNSFGAWYQHH 229
P + +GA Y H
Sbjct: 228 SPLQA-ASIYGASYPFH 243
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 77.4 bits (189), Expect = 1e-14
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 21 LAPVPSVAAAY-PLGLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQ--PAA 77
LAP + AA+ P + AA+P L R L P PA ++ + P A
Sbjct: 41 LAPSSCMLAAFKPEAYAGPEAAAPGLPELR--AELGRAP--SPAKCASAFPAAPAFYPRA 96
Query: 78 LSQPLCGPAEHPQ----ELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLN 133
S P PA+ P+ EL A + L ++ + A++ RKPR ++S Q+ L
Sbjct: 97 YSDP--DPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELE 154
Query: 134 QRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 174
+RF+ +YL+ PER QLA+ L LT TQVKIWFQN+R K K+
Sbjct: 155 RRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKR 195
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 77.4 bits (189), Expect = 1e-14
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 85 PAEHPQELEADSEKPRLSPE------------PSERRPQAPAKKLRKPRTIYSSLQLQHL 132
P EH +E E ++ + S + +E + + RKPR ++S Q+ L
Sbjct: 104 PKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFEL 163
Query: 133 NQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS---GGQEGDFPG 189
+RF+ +YL+ PER LA+ L LT TQVKIWFQN+R K K+ + S G P
Sbjct: 164 ERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPP 223
Query: 190 RTFSV-------SPCSPPLPSLWDLPKA--------GTLPTSGYGNSFGA 224
R +V PC P + P + + P GYGNS A
Sbjct: 224 RRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAA 273
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 76.3 bits (186), Expect = 2e-14
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 54 LLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEK-PRLSPEPSERRPQA 112
LL Y Y P P + L+ L + G HP L P L P P
Sbjct: 51 LLDYGY--PLMPTPTLLAPHAHHPLHK---GDHHHPYFLTTSGMPVPALFPHPQHAELPG 105
Query: 113 PAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKY 172
+ RK RT++S QL L +RF+ +YL+ PER +LA L L++TQVK WFQN+R K+
Sbjct: 106 KHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKH 165
Query: 173 KKLLKQN 179
KK L+++
Sbjct: 166 KKQLRKS 172
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 75.1 bits (183), Expect = 5e-14
Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 108 RRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQN 167
R Q A++ RKPR ++S Q+ L +RF+ +YL+ PER LA+ L LT TQVKIWFQN
Sbjct: 41 RSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQN 100
Query: 168 KRSKYKKLLKQNSGGQEGD--------FPGRTFSVSPCSPPLPSLWDLP---KAGTLPTS 216
+R K K+ + S G P PC P P P A P S
Sbjct: 101 RRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYS 160
Query: 217 GYGNSFGAWY 226
YG GA Y
Sbjct: 161 CYGGYSGAPY 170
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 74.3 bits (181), Expect = 9e-14
Identities = 61/180 (33%), Positives = 81/180 (45%), Gaps = 31/180 (17%)
Query: 23 PVPSVAAAYPLGLSPTTAASPNLSY----------SRPYGHLLSY------PYTEPANPG 66
P P A G +P T + P S+ R G S P EP G
Sbjct: 5 PEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEPEG 64
Query: 67 DSYLSCQQPAALSQPLCGPAEHPQELE--ADSEKPR------LSPEPSE----RRPQAPA 114
+ Q LS GP P+E E A++E R L E + R PQ P
Sbjct: 65 GRSRAGAQNDQLST---GPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPK 121
Query: 115 KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 174
+ ++ R +S Q+ L ++F H +YL+ PERA LA L LT+TQVKIWFQN+R K K+
Sbjct: 122 QPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 102 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161
SP P RR + K R+ RT ++ QL L +F+ T+YL++ ER LA L LT+TQV
Sbjct: 148 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 207
Query: 162 KIWFQNKRSKYKKLLKQNSG 181
KIWFQN+R+K+K KQN G
Sbjct: 208 KIWFQNRRTKWK---KQNPG 224
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 102 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161
SP P RR + K R+ RT ++ QL L +F+ T+YL++ ER LA L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229
Query: 162 KIWFQNKRSKYKKLLKQNSG 181
KIWFQN+R+K+K KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 102 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161
SP P RR + K R+ RT ++ QL L +F+ T+YL++ ER LA L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229
Query: 162 KIWFQNKRSKYKKLLKQNSG 181
KIWFQN+R+K+K KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 73.6 bits (179), Expect = 1e-13
Identities = 64/185 (34%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 32 PLGLSPT-TAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQ 90
P G +PT T A P+ + RP P T PG S P A P G A P
Sbjct: 15 PRGATPTCTPAQPSWARLRPT-RPPEPPSTRQRPPGPRENS---PVAPGPP--GGAAAPG 68
Query: 91 ELEADSEKPRLSPEPSERRPQAPAK--KLRKPRTIYSSLQLQHLNQRFQHTQYLALPERA 148
+ + +P +R + +K K R+ RT ++ QL L +F+ T+YL++ ER
Sbjct: 69 GAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERL 128
Query: 149 QLAAQLGLTQTQVKIWFQNKRSKYKKL-----LKQNSGGQEGDFPGR------TFSVSPC 197
LA L LT+TQVKIWFQN+R+K+KK +GG G PG +SP
Sbjct: 129 NLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPL 188
Query: 198 SPPLP 202
SP P
Sbjct: 189 SPSPP 193
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 102 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161
SP P RR + K R+ RT ++ QL L +F+ T+YL++ ER LA L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229
Query: 162 KIWFQNKRSKYKKLLKQNSG 181
KIWFQN+R+K+K KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 73.6 bits (179), Expect = 1e-13
Identities = 60/184 (32%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 91 ELEADSEKPRLSPEPSER--RPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERA 148
E ++ P S PS R P + A+K +K R ++S Q L +RF+ +YL+ PER
Sbjct: 56 ESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPERE 115
Query: 149 QLAAQLGLTQTQVKIWFQNKRSKYKK-----------------------LLK-------- 177
QLA+ L LT TQVKIWFQN R K K+ LL+
Sbjct: 116 QLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLV 175
Query: 178 ---QNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAW--YQHHSSD 232
Q GG G G + C P + LP P G G++ G + YQH +S
Sbjct: 176 RDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLP---GYPAFGPGSALGLFPAYQHLASP 232
Query: 233 VLAS 236
L S
Sbjct: 233 ALVS 236
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 107 ERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQ 166
E P AP + ++ R +S Q+ L +RF H +YL+ PERA LAA L LT+TQVKIWFQ
Sbjct: 196 EEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQ 255
Query: 167 NKRSKYKK 174
N+R K K+
Sbjct: 256 NRRYKTKR 263
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 72.8 bits (177), Expect = 3e-13
Identities = 60/184 (32%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 23 PVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPL 82
P P P +PT AA P S + P + + P PAN S L L+ P
Sbjct: 100 PAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNP--TPANAAKSPL-------LNSPT 150
Query: 83 CGPAEHPQELEA-DSEKPRLSPEPS------ERRPQAPAKKLRKPRTIYSSLQLQHLNQR 135
P E+ + K + S S ++ P A ++ RT Y+S QL L +
Sbjct: 151 VAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS-KRARTAYTSAQLVELEKE 209
Query: 136 FQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVS 195
F +YL P R ++A L LT+ Q+KIWFQN+R KYKK Q G G++ S S
Sbjct: 210 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK--DQKGKGMLTSSGGQSPSRS 267
Query: 196 PCSP 199
P P
Sbjct: 268 PVPP 271
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 72.8 bits (177), Expect = 3e-13
Identities = 60/184 (32%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 23 PVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPL 82
P P P +PT AA P S + P + + P PAN S L L+ P
Sbjct: 100 PAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNP--TPANAAKSPL-------LNSPT 150
Query: 83 CGPAEHPQELEA-DSEKPRLSPEPS------ERRPQAPAKKLRKPRTIYSSLQLQHLNQR 135
P E+ + K + S S ++ P A ++ RT Y+S QL L +
Sbjct: 151 VAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS-KRARTAYTSAQLVELEKE 209
Query: 136 FQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVS 195
F +YL P R ++A L LT+ Q+KIWFQN+R KYKK Q G G++ S S
Sbjct: 210 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK--DQKGKGMLTSSGGQSPSRS 267
Query: 196 PCSP 199
P P
Sbjct: 268 PVPP 271
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 72.0 bits (175), Expect = 4e-13
Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 29/178 (16%)
Query: 22 APVPSVAAAYP---LGLSPTTAAS------PNLSYSRPYGHLLSYPYTEPANPGDSYLSC 72
A +P+ AA Y G S AA+ P LSYS P PA+P D
Sbjct: 150 AGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYP-----QVQGAHPAHPAD----- 199
Query: 73 QQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAK---KLRKPRTIYSSLQL 129
P L G + Q L A S + P+ + QA + K R+PRT ++S QL
Sbjct: 200 --PIKLG---AGTFQLDQWLRA-STAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQL 253
Query: 130 QHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLK-QNSGGQEGD 186
L +F+ +YL+ P+R ++A L LT+TQVKIWFQN+R K+K+ K + QE +
Sbjct: 254 LELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAE 311
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 71.2 bits (173), Expect = 7e-13
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 96 SEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLG 155
S++P P + + + P K+ ++PRT +++ QLQ L FQ +YL R LA +L
Sbjct: 223 SDRPSSGPRSRKPKKKNPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELS 282
Query: 156 LTQTQVKIWFQNKRSKYKK 174
L ++Q+KIWFQNKR+K KK
Sbjct: 283 LNESQIKIWFQNKRAKIKK 301
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 81 PLCGPAEHPQELEADSEKPRLSPEPSERRP-------QAPAKKLRKPRTIYSSLQLQHLN 133
P P+ + E + P SP P RP QA A K +K RT++S Q+ L
Sbjct: 107 PFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAK-KKTRTVFSRSQVYQLE 165
Query: 134 QRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLL 176
F +YL+ ERA LA+ L LT+TQVK WFQN+R+K+K+ L
Sbjct: 166 STFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 70.5 bits (171), Expect = 1e-12
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 42 SPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEAD------ 95
S L+ PY +S P+ P ++ +P + + ++ ++D
Sbjct: 151 SKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGT 210
Query: 96 SEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLG 155
E+ S P AKK RK RT +S QL L + F+ +YL++ +R LAA L
Sbjct: 211 KEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
Query: 156 LTQTQVKIWFQNKRSKYKK 174
LT TQVK W+QN+R+K+K+
Sbjct: 271 LTDTQVKTWYQNRRTKWKR 289
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,101,299
Number of Sequences: 37866
Number of extensions: 700059
Number of successful extensions: 3330
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 2775
Number of HSP's gapped (non-prelim): 741
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.