Search of human proteins with 20143960

Search of human proteins with 20143960

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
         (168 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]           350   2e-97
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]           305   1e-83
gi|82659115 distal-less homeobox 6 [Homo sapiens]                     153   8e-38
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]           142   1e-34
gi|4758168 distal-less homeobox 2 [Homo sapiens]                      122   1e-28
gi|4885185 distal-less homeobox 3 [Homo sapiens]                      120   4e-28
gi|4885187 distal-less homeobox 5 [Homo sapiens]                      117   4e-27
gi|118582284 msh homeobox 1 [Homo sapiens]                             82   2e-16
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         80   6e-16
gi|27886557 msh homeobox 2 [Homo sapiens]                              78   3e-15
gi|153218470 BarH-like homeobox 1 [Homo sapiens]                       78   3e-15
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...    76   2e-14
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...    75   3e-14
gi|147901462 brain specific homeobox [Homo sapiens]                    75   3e-14
gi|31377777 NK2 homeobox 8 [Homo sapiens]                              74   5e-14
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             74   8e-14
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  74   8e-14
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  74   8e-14
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  74   8e-14
gi|4502365 NK3 homeobox 2 [Homo sapiens]                               74   8e-14
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         72   2e-13
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    72   2e-13
gi|19923352 NK3 homeobox 1 [Homo sapiens]                              71   4e-13
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        69   1e-12
gi|157426823 NK2 homeobox 4 [Homo sapiens]                             69   2e-12
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             69   2e-12
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       69   2e-12
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       69   2e-12
gi|84105335 mesenchyme homeobox 2 [Homo sapiens]                       68   3e-12
gi|70608170 H6 family homeobox 2 [Homo sapiens]                        68   3e-12

>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
          Length = 168

 Score =  350 bits (899), Expect = 2e-97
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MKLSVLPPRSLLAPYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHL 60
           MKLSVLPPRSLLAPYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHL
Sbjct: 1   MKLSVLPPRSLLAPYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHL 60

Query: 61  NQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTF 120
           NQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTF
Sbjct: 61  NQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTF 120

Query: 121 SVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 168
           SVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
Sbjct: 121 SVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 168


>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
          Length = 240

 Score =  305 bits (781), Expect = 1e-83
 Identities = 154/174 (88%), Positives = 155/174 (89%), Gaps = 11/174 (6%)

Query: 3   LSVLPPRSLLAPYTVLCCPP--------DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS 54
           LS   P +L  P   LC P         DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS
Sbjct: 70  LSCQQPAALSQP---LCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSS 126

Query: 55  LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD 114
           LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD
Sbjct: 127 LQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGD 186

Query: 115 FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 168
           FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
Sbjct: 187 FPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM 240


>gi|82659115 distal-less homeobox 6 [Homo sapiens]
          Length = 265

 Score =  153 bits (386), Expect = 8e-38
 Identities = 81/140 (57%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

Query: 32  EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 91
           E  E R     KK+RKPRTIYSSLQLQ LN RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 126 ENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKI 185

Query: 92  WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL---PKAGTLPTSGYGN 148
           WFQNKRSK+KKLLKQ S   E D    + ++SP SP LP +WD+    K  ++P + Y  
Sbjct: 186 WFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMP 245

Query: 149 SFGAWYQHHSSDVLASPQMM 168
            +  WY     D +  PQMM
Sbjct: 246 GYSHWYSSPHQDTMQRPQMM 265


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score =  142 bits (358), Expect = 1e-34
 Identities = 81/151 (53%), Positives = 98/151 (64%), Gaps = 7/151 (4%)

Query: 23  DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQL 82
           DSEK  +  E  E R     KK+RKPRTIYSSLQLQ LN+RFQ TQYLALPERA+LAA L
Sbjct: 107 DSEKSTVV-EGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL 165

Query: 83  GLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLP 142
           GLTQTQVKIWFQNKRSK+KKL+KQ     EG       ++S  SPP+P  W+ P + +  
Sbjct: 166 GLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWN-PNSSSGK 224

Query: 143 TSG-----YGNSFGAWYQHHSSDVLASPQMM 168
            SG     Y  S+ +WY     + +  PQ+M
Sbjct: 225 GSGGNAGSYIPSYTSWYPSAHQEAMQQPQLM 255


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score =  122 bits (306), Expect = 1e-28
 Identities = 68/124 (54%), Positives = 80/124 (64%), Gaps = 3/124 (2%)

Query: 13  APYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLAL 72
           APY     P ++E  +   EP  R      KK+RKPRTIYSS QL  L +RFQ TQYLAL
Sbjct: 120 APYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 179

Query: 73  PERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPL--P 130
           PERA+LAA LGLTQTQVKIWFQN+RSK+KK+ K      E   PG + S    SPP+  P
Sbjct: 180 PERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSE-QHPGASASPPCASPPVSAP 238

Query: 131 SLWD 134
           + WD
Sbjct: 239 ASWD 242


>gi|4885185 distal-less homeobox 3 [Homo sapiens]
          Length = 287

 Score =  120 bits (302), Expect = 4e-28
 Identities = 65/110 (59%), Positives = 74/110 (67%), Gaps = 1/110 (0%)

Query: 31  PEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVK 90
           PE   R      KK+RKPRTIYSS QL  L +RFQ  QYLALPERA+LAAQLGLTQTQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 91  IWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 140
           IWFQN+RSK+KKL K      E   P  + S++  SPP P+LWD     T
Sbjct: 175 IWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223


>gi|4885187 distal-less homeobox 5 [Homo sapiens]
          Length = 289

 Score =  117 bits (294), Expect = 4e-27
 Identities = 67/145 (46%), Positives = 83/145 (57%), Gaps = 16/145 (11%)

Query: 32  EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 91
           EP  R      KK+RKPRTIYSS QL  L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 124 EPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 183

Query: 92  WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWD---------------LP 136
           WFQNKRSK KK++K      E   P  +  ++  SP  P++W+                P
Sbjct: 184 WFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPP 242

Query: 137 KAGTLPTSGYGNSFGAWYQHHSSDV 161
            +   P S Y  +  +WY   +S +
Sbjct: 243 TSNQSPASSYLENSASWYTSAASSI 267


>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 14/124 (11%)

Query: 22  PDSEKPRLSPEPSERRPQAPA------KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPER 75
           P  + PR SP P+ RR   PA      K  RKPRT +++ QL  L ++F+  QYL++ ER
Sbjct: 144 PWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202

Query: 76  AQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL 135
           A+ ++ L LT+TQVKIWFQN+R+K K+L       QE +      +  P  PP       
Sbjct: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPPAAFGLSF 255

Query: 136 PKAG 139
           P  G
Sbjct: 256 PLGG 259


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 80.5 bits (197), Expect = 6e-16
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 17/115 (14%)

Query: 30  SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 89
           S E    +P    KK R+ RTI++ LQL  L ++FQ  +YL+ P+R  LA  LGLTQ QV
Sbjct: 118 SSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQV 177

Query: 90  KIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS 144
           K W+QN+R K+KK++ +  GGQE          +P  P        PK  ++PTS
Sbjct: 178 KTWYQNRRMKWKKMVLK--GGQE----------APTKPK-----GRPKKNSIPTS 215


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 15/137 (10%)

Query: 25  EKPRLSPEPSERRPQAPA----KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAA 80
           E  R SP P    P        K  RKPRT +++ QL  L ++F+  QYL++ ERA+ ++
Sbjct: 118 EPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSS 177

Query: 81  QLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 140
            L LT+TQVKIWFQN+R+K K+L       QE +      +  P    LPS + LP   +
Sbjct: 178 SLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPM---LPSSFSLPFPIS 227

Query: 141 LPTSGYGNSFGAWYQHH 157
            P     + +GA Y  H
Sbjct: 228 SPLQA-ASIYGASYPFH 243


>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
          Length = 254

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 16/107 (14%)

Query: 38  PQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKR 97
           P   AKK R+ RT+++ LQL  L +RF+  +YL+ P+R  LA  LGL+Q QVK W+QN+R
Sbjct: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194

Query: 98  SKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS 144
            K+KK++ Q  G +           SP  P        PK  ++PTS
Sbjct: 195 MKWKKIVLQGGGLE-----------SPTKPK-----GRPKKNSIPTS 225


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 18/137 (13%)

Query: 34  SERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWF 93
           +E   +   +  RKPR ++S  Q+  L +RF+  +YL+ PER  LA+ L LT TQVKIWF
Sbjct: 137 AEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWF 196

Query: 94  QNKRSKYKKLLKQNS---GGQEGDFPGRTFSV-------SPCSPPLPSLWDLPKA----- 138
           QN+R K K+  +  S   G      P R  +V        PC  P    +  P +     
Sbjct: 197 QNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA 256

Query: 139 ---GTLPTSGYGNSFGA 152
               + P  GYGNS  A
Sbjct: 257 YSYNSFPAYGYGNSAAA 273


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 36  RRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQN 95
           R  Q  A++ RKPR ++S  Q+  L +RF+  +YL+ PER  LA+ L LT TQVKIWFQN
Sbjct: 41  RSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQN 100

Query: 96  KRSKYKKLLKQNSGGQEGD--------FPGRTFSVSPCSPPLPSLWDLP---KAGTLPTS 144
           +R K K+  +  S    G          P       PC  P P     P    A   P S
Sbjct: 101 RRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYS 160

Query: 145 GYGNSFGAWY 154
            YG   GA Y
Sbjct: 161 CYGGYSGAPY 170


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 36/81 (44%), Positives = 51/81 (62%)

Query: 27  PRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQ 86
           P L P P          + RK RT++S  QL  L +RF+  +YL+ PER +LA  L L++
Sbjct: 92  PALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSE 151

Query: 87  TQVKIWFQNKRSKYKKLLKQN 107
           TQVK WFQN+R K+KK L+++
Sbjct: 152 TQVKTWFQNRRMKHKKQLRKS 172


>gi|31377777 NK2 homeobox 8 [Homo sapiens]
          Length = 239

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 61/180 (33%), Positives = 81/180 (45%), Gaps = 42/180 (23%)

Query: 21  PPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAA 80
           PPDS + R S  P+   P + A+K +K R ++S  Q   L +RF+  +YL+ PER QLA+
Sbjct: 63  PPDSSQ-RPSARPAS--PGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLAS 119

Query: 81  QLGLTQTQVKIWFQNKRSKYKK-----------------------LLK-----------Q 106
            L LT TQVKIWFQN R K K+                       LL+           Q
Sbjct: 120 LLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQ 179

Query: 107 NSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAW--YQHHSSDVLAS 164
             GG  G   G   +   C  P  +   LP     P  G G++ G +  YQH +S  L S
Sbjct: 180 PCGGGGGGEVGTAAAQEKCGAPPAAACPLP---GYPAFGPGSALGLFPAYQHLASPALVS 236


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 30  SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 89
           SP P  RR +    K R+ RT ++  QL  L  +F+ T+YL++ ER  LA  L LT+TQV
Sbjct: 148 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 207

Query: 90  KIWFQNKRSKYKKLLKQNSG 109
           KIWFQN+R+K+K   KQN G
Sbjct: 208 KIWFQNRRTKWK---KQNPG 224


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 30  SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 89
           SP P  RR +    K R+ RT ++  QL  L  +F+ T+YL++ ER  LA  L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229

Query: 90  KIWFQNKRSKYKKLLKQNSG 109
           KIWFQN+R+K+K   KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 30  SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 89
           SP P  RR +    K R+ RT ++  QL  L  +F+ T+YL++ ER  LA  L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229

Query: 90  KIWFQNKRSKYKKLLKQNSG 109
           KIWFQN+R+K+K   KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 30  SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 89
           SP P  RR +    K R+ RT ++  QL  L  +F+ T+YL++ ER  LA  L LT+TQV
Sbjct: 170 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229

Query: 90  KIWFQNKRSKYKKLLKQNSG 109
           KIWFQN+R+K+K   KQN G
Sbjct: 230 KIWFQNRRTKWK---KQNPG 246


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 35  ERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQ 94
           E  P AP  + ++ R  +S  Q+  L +RF H +YL+ PERA LAA L LT+TQVKIWFQ
Sbjct: 196 EEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQ 255

Query: 95  NKRSKYKK 102
           N+R K K+
Sbjct: 256 NRRYKTKR 263


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 34/83 (40%), Positives = 51/83 (61%)

Query: 20  CPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLA 79
           C   S++P   P   + + + P K+ ++PRT +++ QLQ L   FQ  +YL    R  LA
Sbjct: 219 CTRYSDRPSSGPRSRKPKKKNPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLA 278

Query: 80  AQLGLTQTQVKIWFQNKRSKYKK 102
            +L L ++Q+KIWFQNKR+K KK
Sbjct: 279 QELSLNESQIKIWFQNKRAKIKK 301


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 7   PPRSLLAPYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQH 66
           P +   A    LC    + +   +   +  RP+A  ++ RKPR ++S  Q+  L +RF+ 
Sbjct: 102 PAKDPRAEKKELCALQKAVELEKTEADNAERPRA--RRRRKPRVLFSQAQVYELERRFKQ 159

Query: 67  TQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 102
            +YL+ PER QLA+ L LT TQVKIWFQN+R K K+
Sbjct: 160 QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKR 195


>gi|19923352 NK3 homeobox 1 [Homo sapiens]
          Length = 234

 Score = 71.2 bits (173), Expect = 4e-13
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 36  RRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQN 95
           R PQ P +  ++ R  +S  Q+  L ++F H +YL+ PERA LA  L LT+TQVKIWFQN
Sbjct: 115 RLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQN 174

Query: 96  KRSKYKK 102
           +R K K+
Sbjct: 175 RRYKTKR 181


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query: 34  SERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWF 93
           S   P   AKK RK RT +S  QL  L + F+  +YL++ +R  LAA L LT TQVK W+
Sbjct: 221 SRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWY 280

Query: 94  QNKRSKYKK 102
           QN+R+K+K+
Sbjct: 281 QNRRTKWKR 289


>gi|157426823 NK2 homeobox 4 [Homo sapiens]
          Length = 354

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 40  APAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSK 99
           A A   RK R ++S  Q+  L +RF+  +YL+ PER  LA+ + LT TQVKIWFQN R K
Sbjct: 184 AAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 243

Query: 100 YKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPS 131
            K+  K  +  Q     G    + P  PP PS
Sbjct: 244 MKRQAKDKAAQQLQQEGG----LGPPPPPPPS 271


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 33/75 (44%), Positives = 50/75 (66%)

Query: 40  APAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSK 99
           AP  K R+ RT ++S QL  L + F   +YL+L ER+Q+A  L L++ QVKIWFQN+R+K
Sbjct: 256 APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAK 315

Query: 100 YKKLLKQNSGGQEGD 114
           +K++   N   + G+
Sbjct: 316 WKRIKAGNVSSRSGE 330


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 32/83 (38%), Positives = 50/83 (60%)

Query: 20  CPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLA 79
           C   S++P   P   + + +   K+ ++PRT +++ QLQ L   FQ  +Y+    R  LA
Sbjct: 278 CTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLA 337

Query: 80  AQLGLTQTQVKIWFQNKRSKYKK 102
            +L L ++Q+KIWFQNKR+K KK
Sbjct: 338 QELSLNESQIKIWFQNKRAKIKK 360


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 22  PDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQ 81
           P +E  +   E  E++P   A + +K RT++S  Q+  L   F   +YL+  ERA LAA 
Sbjct: 207 PGAEDWKKGAESPEKKP---ACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAAS 263

Query: 82  LGLTQTQVKIWFQNKRSKYKKLL 104
           L LT+TQVKIWFQN+R+K+K+ L
Sbjct: 264 LHLTETQVKIWFQNRRNKWKRQL 286


>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
          Length = 304

 Score = 68.2 bits (165), Expect = 3e-12
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 21/117 (17%)

Query: 14  PYTVLCCPPDSEKPRLSPEPSERRPQAPAK-----------------KLRKPRTIYSSLQ 56
           P    C P D  +  LSP  +E+R     K                 K RK RT ++  Q
Sbjct: 139 PTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQ 198

Query: 57  LQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEG 113
           ++ L   F H  YL    R ++A  L LT+ QVK+WFQN+R K+K++     GGQ+G
Sbjct: 199 IRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRV----KGGQQG 251


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 68.2 bits (165), Expect = 3e-12
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 12/91 (13%)

Query: 25  EKPRL----SPEPSERRP-------QAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALP 73
           EK RL    SP P   RP       QA A K +K RT++S  Q+  L   F   +YL+  
Sbjct: 119 EKERLLPAGSPSPGSERPRDGGAERQAGAAK-KKTRTVFSRSQVYQLESTFDMKRYLSSS 177

Query: 74  ERAQLAAQLGLTQTQVKIWFQNKRSKYKKLL 104
           ERA LA+ L LT+TQVK WFQN+R+K+K+ L
Sbjct: 178 ERACLASSLQLTETQVKTWFQNRRNKWKRQL 208


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,100,334
Number of Sequences: 37866
Number of extensions: 410453
Number of successful extensions: 2662
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2253
Number of HSP's gapped (non-prelim): 456
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.