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Search of human proteins with 19924161
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
(495 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 994 0.0
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 970 0.0
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 50 5e-06
gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 49 1e-05
gi|51477718 TATA box binding protein-associated factor, RNA poly... 47 4e-05
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 46 9e-05
gi|4504487 histidine rich calcium binding protein precursor [Hom... 46 9e-05
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 45 2e-04
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 45 2e-04
gi|21735415 centromere protein B [Homo sapiens] 44 3e-04
gi|93141003 testican 3 isoform 1 [Homo sapiens] 44 3e-04
gi|93141001 testican 3 isoform 2 [Homo sapiens] 44 3e-04
gi|55956788 nucleolin [Homo sapiens] 44 3e-04
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 44 3e-04
gi|210032580 SET domain containing 1B [Homo sapiens] 44 3e-04
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 44 3e-04
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 43 6e-04
gi|119395727 cardiac calsequestrin 2 precursor [Homo sapiens] 42 0.001
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 42 0.001
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 42 0.001
gi|11545835 TSPY-like 2 [Homo sapiens] 42 0.001
gi|115529449 upstream binding transcription factor, RNA polymera... 42 0.001
gi|115529451 upstream binding transcription factor, RNA polymera... 42 0.001
gi|7657671 upstream binding transcription factor, RNA polymerase... 42 0.001
gi|18093112 ABT1-associated protein [Homo sapiens] 42 0.001
gi|42740903 MTERF domain containing 2 [Homo sapiens] 42 0.002
gi|15559211 RE1-silencing transcription factor [Homo sapiens] 41 0.002
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 41 0.003
gi|217330641 IWS1 homolog [Homo sapiens] 41 0.003
gi|16445033 ACRC protein [Homo sapiens] 41 0.003
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 994 bits (2571), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MWRGCARSRKRKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLL 60
MWRGCARSRKRKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLL
Sbjct: 1 MWRGCARSRKRKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLL 60
Query: 61 GDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVD 120
GDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVD
Sbjct: 61 GDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVD 120
Query: 121 IREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQ 180
IREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQ
Sbjct: 121 IREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQ 180
Query: 181 EELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSG 240
EELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSG
Sbjct: 181 EELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSG 240
Query: 241 QVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHT 300
QVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHT
Sbjct: 241 QVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHT 300
Query: 301 VEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVN 360
VEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVN
Sbjct: 301 VEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVN 360
Query: 361 GEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEP 420
GEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEP
Sbjct: 361 GEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEP 420
Query: 421 QENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETG 480
QENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETG
Sbjct: 421 QENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETG 480
Query: 481 KRVSKFKAARLQQKD 495
KRVSKFKAARLQQKD
Sbjct: 481 KRVSKFKAARLQQKD 495
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 970 bits (2507), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 12 KKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAK 71
KKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAK
Sbjct: 52 KKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAK 111
Query: 72 QAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEF 131
QAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEF
Sbjct: 112 QAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEF 171
Query: 132 KAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKP 191
KAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKP
Sbjct: 172 KAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKP 231
Query: 192 DTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVN 251
DTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVN
Sbjct: 232 DTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVN 291
Query: 252 GSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTG 311
GSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTG
Sbjct: 292 GSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTG 351
Query: 312 KNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILK 371
KNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILK
Sbjct: 352 KNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILK 411
Query: 372 SRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLS 431
SRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLS
Sbjct: 412 SRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLS 471
Query: 432 VTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARL 491
VTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARL
Sbjct: 472 VTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAARL 531
Query: 492 QQKD 495
QQKD
Sbjct: 532 QQKD 535
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 30/193 (15%)
Query: 207 EKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDD----DD 262
E E+ N N+ + D D +++ G V S S G H DD DD
Sbjct: 210 ETEESNLNMYTRGKQKDIQ---RTDEETTDNQEGSVES----SEEGEDQEHEDDGEDEDD 262
Query: 263 DDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKK 322
+DDDDDDDD+ DDDD D++ E G +N KR + K T + +
Sbjct: 263 EDDDDDDDDDDDDDDEDDEDEEDGEEENQ------------KRYYLRQRKATVYYQAPLE 310
Query: 323 EEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSD 382
+ +++ N SG ++ P YR Y R + + + S
Sbjct: 311 KPRHQRKPNIFYSGPASPARPR-------YRLSSAGPRSPYCKRMNRRRHAIHSSDSTSS 363
Query: 383 TSESSAAEFDDRR 395
+S F+ RR
Sbjct: 364 SSSEDEQHFERRR 376
>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
Length = 1093
Score = 48.9 bits (115), Expect = 1e-05
Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 16/303 (5%)
Query: 157 NDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEE----EKEDRN 212
++ ++ L A+ + A + ++ E+ S P + ++G TTS E E
Sbjct: 211 SNTSTQSLTAETKDIALEPKEQKHEDRQSNTPSPPVSTFSSGTSTTSDIEVLDHESVISE 270
Query: 213 TNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDN 272
++ ++ + TDS + H S + S + N + S D + D +
Sbjct: 271 SSASSRQETTDSKSSLHLMQTSFQLLSASACPEYNRLDDFQKLTESCCSSDAFERIDSFS 330
Query: 273 IDDDDG------DNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGK----NTTLKFSEKK 322
+ D ++D E G G +P I S T + K V GK N TL ++
Sbjct: 331 VQSLDSRSVSEINSDDELSGKGYALVPIIVNSSTPKSKTVESAEGKSEEVNETLVIPTEE 390
Query: 323 EEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSD 382
E + +++T ++ TP + + +D V + P +S ++ S + VC
Sbjct: 391 AEMEESGRSATPVNCEQPDILVSSTPINEGQTVLDKVAEQCEPAESQPEALSEKEDVCK- 449
Query: 383 TSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVI 442
T E + + R L S+S E+A + ++ L++E +++ +S + F+ +
Sbjct: 450 TVEFLNEKLEKREAQLLSLSKEKALLEEAFDN-LKDEMFRVKEESSSISSLKDEFTQRIA 508
Query: 443 EKE 445
E E
Sbjct: 509 EAE 511
Score = 30.0 bits (66), Expect = 5.0
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 62 DNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKV-------MKNFESRVEFTE-DLQKMSD 113
+N AK + K V +E +H+++ +D ++V +K S VE E DL ++
Sbjct: 587 ENMVAKLNKK--VKELEEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQV 644
Query: 114 AAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWAR 173
++ + I+ + K + K S+ EA ++ ++K+K+ L+ A+
Sbjct: 645 DMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQ 704
Query: 174 LEELERQEEL---LGELD---SKPDTVIANGEDTTSSE--------EEKEDRNTNVNAMH 219
E ++QE L +G+L + + A ED E +E E+RN ++
Sbjct: 705 EEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELS--Q 762
Query: 220 QVTDSHTPCHKDVASSEPFSGQVNS 244
V+ + P + + + + G S
Sbjct: 763 SVSSTTRPLLRQIENLQATLGSQTS 787
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 47.0 bits (110), Expect = 4e-05
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGK 312
S S + DD+D+DD+D+D+D +D+D D + E + + + +E + R N G
Sbjct: 328 SRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEEYLERQLQAEFIESGQYRANEGT 387
Query: 313 NTTLKFSEKKEEAKRKR 329
++ + +K+ E K K+
Sbjct: 388 SSIVMEIQKQIEKKEKK 404
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 45.8 bits (107), Expect = 9e-05
Identities = 48/246 (19%), Positives = 94/246 (38%), Gaps = 10/246 (4%)
Query: 179 RQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNT-NVNAMHQVTDSHTPCHKDVASSEP 237
+ E + DSK D+ +N D++ + + + N+ N + +DS +S+
Sbjct: 628 KSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSS 687
Query: 238 FSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDN--DHEALGVGDNSIPTI 295
S + N S + SS SD D D D + N D D N D +S +
Sbjct: 688 DSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSS 747
Query: 296 YFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAF 355
S++ + ++ + + S+ + + + + ++ + +D +
Sbjct: 748 DSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSS 807
Query: 356 VDVVNGEYVPRKSILKSRSRENSVCSDTSESS-------AAEFDDRRGVLRSISCEEATC 408
+ + S S S +S SD+S SS +++ D RS S +
Sbjct: 808 DSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDS 867
Query: 409 SDTSES 414
SD+S+S
Sbjct: 868 SDSSDS 873
Score = 40.8 bits (94), Expect = 0.003
Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 7/236 (2%)
Query: 186 ELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQ 245
E D T N D+ + D N ++ +DS D ++S S +S
Sbjct: 511 EDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSD 570
Query: 246 LNCSVNGSSSYHSDDDDDDDDDDD-------DDNIDDDDGDNDHEALGVGDNSIPTIYFS 298
+ S + S S SD D D D D D+ D D + ++ D+ +
Sbjct: 571 SSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSE 630
Query: 299 HTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDV 358
+ ++ + + S+ + + +++ + + + +D +
Sbjct: 631 SDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSS 690
Query: 359 VNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSES 414
+ + S +S SD+S+SS + D S S + + SD+S+S
Sbjct: 691 DSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDS 746
Score = 40.4 bits (93), Expect = 0.004
Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 185 GELDSKPDTVIANGEDTTSSEEEKEDR-NTNVNAMHQVTDSHTPCHKDVASSEPFSGQVN 243
G + ++ + V G S K NT ++ DS+ K + +P S +
Sbjct: 412 GNVKTQGEVVNIEGPGQKSEPGNKVGHSNTGSDSNSDGYDSYDFDDKSMQGDDPNSSDES 471
Query: 244 ---------SQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGD-----NDHEALGVGD 289
S N S G +SY+SD+ D+ + D +DDD D N+ ++ G G+
Sbjct: 472 NGNDDANSESDNNSSSRGDASYNSDESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGNGN 531
Query: 290 NSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPA 349
N S + + K ++ + + S+ + + +S S S +
Sbjct: 532 NGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSS 591
Query: 350 DIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCS 409
D + S S S ++S SD+S+SS ++ D + S S + + S
Sbjct: 592 D---------SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKS--ESDSSDSDSKS 640
Query: 410 DTSES 414
D+S+S
Sbjct: 641 DSSDS 645
Score = 40.0 bits (92), Expect = 0.005
Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)
Query: 188 DSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLN 247
DS + +N D+ S + +++ N+ S + D + S+ + +S +
Sbjct: 772 DSSDSSDSSNSSDSNDSSNSSDSSDSS-NSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSS 830
Query: 248 CSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVR 307
S + S+S S D D D D D+ + D N ++ D+S
Sbjct: 831 DSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSS----------NSSDSS 880
Query: 308 INTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRK 367
++ N + S+ + + +S+ S +S+ + + + +
Sbjct: 881 DSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSN 940
Query: 368 SILKSRSRENSVCSDTSESS-AAEFDDRRGVLRSISCEEATCSDTSES 414
S S S ++S SD+S SS ++ D S S + + SD+S+S
Sbjct: 941 SSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDS 988
Score = 37.4 bits (85), Expect = 0.032
Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 8/229 (3%)
Query: 190 KPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCS 249
K D+ ++ D+++S + + +++ + + +DS + SS+ S ++ + S
Sbjct: 546 KSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSS 605
Query: 250 VNGSSSYHSDDDDDDDDDDD----DDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKR 305
+ SS SD D D D + + D D +D D+S + +
Sbjct: 606 DSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNS 665
Query: 306 VRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVP 365
+ +++ S +S+ S +S++ + + D N
Sbjct: 666 SDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSD 725
Query: 366 RKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSES 414
S S S ++S SD+S+SS D S S + + SD+S+S
Sbjct: 726 SDSSNSSDSSDSSNSSDSSDSS----DSSNSSDSSDSSDSSNSSDSSDS 770
Score = 35.8 bits (81), Expect = 0.092
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 1/153 (0%)
Query: 188 DSKPDTVIANGEDTTSSEEEKEDRNTNVNA-MHQVTDSHTPCHKDVASSEPFSGQVNSQL 246
DS + +N D++ S E + +++ ++ +DS +S+ S +
Sbjct: 1131 DSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSS 1190
Query: 247 NCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRV 306
+ S + SS SD D D D D+ D D + ++ ++S + +
Sbjct: 1191 DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSS 1250
Query: 307 RINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSA 339
+ +++ S+ +E+ + K+ G+ + +
Sbjct: 1251 DSSDSSDSSDSTSDSNDESDSQSKSGNGNNNGS 1283
Score = 34.3 bits (77), Expect = 0.27
Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 27/220 (12%)
Query: 197 NGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGS--S 254
+ + SSE N+N + +DS +S S ++ + S + S S
Sbjct: 917 SSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDS 976
Query: 255 SYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNT 314
S S+ D D D D+ D D N ++ D+S S++ + ++ +
Sbjct: 977 SDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDS----SNSSDSSNSSDSSNSSD 1032
Query: 315 TLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRS 374
+ S+ + + + + ++ + +D S S
Sbjct: 1033 SSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSD--------------------SSDS 1072
Query: 375 RENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSES 414
++S SD+SESS + D S S + + SD+S+S
Sbjct: 1073 SDSSDSSDSSESSDSS-DSSNSSDSSDSSDSSDSSDSSDS 1111
Score = 32.0 bits (71), Expect = 1.3
Identities = 19/95 (20%), Positives = 38/95 (40%)
Query: 197 NGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSY 256
+ + + SSE ++N + +DS +S S ++ + S + SS
Sbjct: 1075 SSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSD 1134
Query: 257 HSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
SD + D D ++ D D + ++ D+S
Sbjct: 1135 SSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSS 1169
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 45.8 bits (107), Expect = 9e-05
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 198 GEDTTSSEEEKEDRNTNV-NAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSY 256
GE+ EEE+E+ +T + H+ + +DV+ G +
Sbjct: 192 GEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQG--------- 242
Query: 257 HSDDDDDDDDDDDDDNIDDDDGDNDHEA 284
H +DDDDDDDDDDDD+ DD + H+A
Sbjct: 243 HEEDDDDDDDDDDDDDDDDVSIEYRHQA 270
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLK 317
+D+DDDDDD++DDD DDDD +D EA + P K +R KN
Sbjct: 160 ADEDDDDDDEEDDDEDDDDDDFDDEEA----EEKAPV--------KKSIRDTPAKNAQKS 207
Query: 318 FSEKKEEAKRKRKNSTGSGHSAQELPTIRTP 348
K+ S G ++ T +TP
Sbjct: 208 NQNGKDSKPSSTPRSKGQESFKKQEKTPKTP 238
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 194 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252
++A ED S +EE+ED + +++ S P G Q +
Sbjct: 116 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAA 160
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGD 279
DD++DDD+DDDDD+ DD++ +
Sbjct: 161 DEDDDDDDEEDDDEDDDDDDFDDEEAE 187
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLK 317
+D+DDDDDD++DDD DDDD +D EA + P K +R KN
Sbjct: 160 ADEDDDDDDEEDDDEDDDDDDFDDEEA----EEKAPV--------KKSIRDTPAKNAQKS 207
Query: 318 FSEKKEEAKRKRKNSTGSGHSAQELPTIRTP 348
K+ S G ++ T +TP
Sbjct: 208 NQNGKDSKPSSTPRSKGQESFKKQEKTPKTP 238
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 194 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252
++A ED S +EE+ED + +++ S P G Q +
Sbjct: 116 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAA 160
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGD 279
DD++DDD+DDDDD+ DD++ +
Sbjct: 161 DEDDDDDDEEDDDEDDDDDDFDDEEAE 187
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 44.3 bits (103), Expect = 3e-04
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 175 EELERQEELLGELDSKPDTVIANGE-DTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVA 233
EE E +EE GE + + E D S EEE+ED ++ + + D +
Sbjct: 427 EEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSEGL-EAEDWAQGVVEAGG 485
Query: 234 SSEPFSGQVNSQLNCS--VNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
S + Q +Q + G SD +++DD+++DD++ DDDD + D + + V
Sbjct: 486 SFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPVPSFG 545
Query: 292 IPTIYFS 298
YF+
Sbjct: 546 EAMAYFA 552
Score = 32.7 bits (73), Expect = 0.78
Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 153 ADIANDVKSKDLLADKELWARLEELERQEELLGELDSKP--DTVIANGEDTTSSEEEKED 210
A I +KS+ ++E EE E +EE GE + + + GE EEE+ +
Sbjct: 395 ATITTSLKSEGEEEEEE-----EEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVE 449
Query: 211 RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSS--------YHSDDDD 262
+V++ + + + + + + G V + + G+ + +D
Sbjct: 450 EEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGED 509
Query: 263 DDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTV 301
D D +++D+ ++DD D D + + +P F +
Sbjct: 510 SDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPVPSFGEAM 548
>gi|93141003 testican 3 isoform 1 [Homo sapiens]
Length = 433
Score = 44.3 bits (103), Expect = 3e-04
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 26/84 (30%)
Query: 226 TPCHKDVAS--------SEPFSGQVNSQLNCSVN-------GSSSYH--SDDDDDDDD-- 266
T CH V +E ++N +C+++ S +H +DD+DD+DD
Sbjct: 347 TQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASGDFHEWTDDEDDEDDIM 406
Query: 267 -------DDDDDNIDDDDGDNDHE 283
DDD+D DDDDG +DH+
Sbjct: 407 NDEDEIEDDDEDEGDDDDGGDDHD 430
>gi|93141001 testican 3 isoform 2 [Homo sapiens]
Length = 436
Score = 44.3 bits (103), Expect = 3e-04
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 26/84 (30%)
Query: 226 TPCHKDVAS--------SEPFSGQVNSQLNCSVN-------GSSSYH--SDDDDDDDD-- 266
T CH V +E ++N +C+++ S +H +DD+DD+DD
Sbjct: 350 TQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASGDFHEWTDDEDDEDDIM 409
Query: 267 -------DDDDDNIDDDDGDNDHE 283
DDD+D DDDDG +DH+
Sbjct: 410 NDEDEIEDDDEDEGDDDDGGDDHD 433
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 199 EDTTSSEEEKEDRNTNVNAMHQVTDSHTPCH-KDVASSEPFSGQVNSQLNCSVNGSSSYH 257
ED E++++D + + + TP K A P + +V
Sbjct: 187 EDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAK-------NVAEDEDEE 239
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHE 283
DD+D+DDDDD+DD DDD+ D + E
Sbjct: 240 EDDEDEDDDDDEDDEDDDDEDDEEEE 265
Score = 43.1 bits (100), Expect = 6e-04
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 158 DVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNA 217
+ K +D +++ + +E + ++E E + +P + A S +E+ ED + +
Sbjct: 139 NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDED- 197
Query: 218 MHQVTDSHTPCHKDVASSEPFSGQVNSQL---NCSVNGSSSYHSDDDDDDDDDDDDDNID 274
D ++ + P G+ +++ +DD+D+DDDDD+D+ D
Sbjct: 198 --DDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDED 255
Query: 275 DDDGDNDHE 283
DDD D++ E
Sbjct: 256 DDDEDDEEE 264
Score = 42.0 bits (97), Expect = 0.001
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 24/87 (27%)
Query: 199 EDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHS 258
ED S E+E++D + + + D P A++ P S
Sbjct: 149 EDDDSEEDEEDDEDEDEDE-----DEIEPAAMKAAAAAPAS------------------- 184
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHEAL 285
+D+DD+DD+DD+D+ DD++ D++ EA+
Sbjct: 185 EDEDDEDDEDDEDDDDDEEDDSEEEAM 211
Score = 38.1 bits (87), Expect = 0.019
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 251 NGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEAL 285
NG ++ D D+++DDD ++D DD+D D D + +
Sbjct: 136 NGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEI 170
Score = 31.2 bits (69), Expect = 2.3
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHEALG 286
+DD+DDDD+DD++ ++++ + EA G
Sbjct: 251 EDDEDDDDEDDEEEEEEEEEEPVKEAPG 278
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 226 TPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEAL 285
TP K A P G N + + S +DDD ++D++DD++ D+D+ + + A+
Sbjct: 121 TPGKKGAAI--PAKGAKNGK---NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAM 175
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 43.9 bits (102), Expect = 3e-04
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIP 293
++DD+D+DDD+DDD+ DDD+ D+D + + S+P
Sbjct: 1689 AEDDEDEDDDEDDDDEDDDEDDDDEDLRTDSEESLP 1724
Score = 37.0 bits (84), Expect = 0.041
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 233 ASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDD 277
A+ E +L + +DDD+DDDD+DDD DDD+
Sbjct: 1669 AAGESSQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDDDDE 1713
Score = 33.9 bits (76), Expect = 0.35
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHEA 284
DDD+DDD+DDDD+++ D ++ EA
Sbjct: 1701 DDDEDDDEDDDDEDLRTDSEESLPEA 1726
Score = 29.6 bits (65), Expect = 6.6
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 223 DSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDD----DDDDDDDDDNIDDDDG 278
D+ P D A+ P G + + G SS ++++ +++ +DD+D DD+D
Sbjct: 1645 DAGDPGPPDAAAPGPREGAAAA---AAAAGESSQEDEEEELELPEEEAEDDEDEDDDEDD 1701
Query: 279 DNDHEALGVGDNSIPT 294
D++ + D + T
Sbjct: 1702 DDEDDDEDDDDEDLRT 1717
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 43.9 bits (102), Expect = 3e-04
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 67/312 (21%)
Query: 200 DTTSSEEEKEDR-NTNVNAMHQVTD-------SHTPCHKDVASSEP-------------- 237
DTTSS ++K R +T+V+ + ++ + TPC ++A +P
Sbjct: 971 DTTSSGDQKRLRPSTSVDEEDEESERERDRDMADTPC--ELAKRDPKGVGVRRRPARPLE 1028
Query: 238 --FSGQVNSQLNCSVNGSSSYH---SDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSI 292
G+ + + + S S+ ++++++++DDDDDD+ D D+ +ND E + + S
Sbjct: 1029 LDSGGEEDEKESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASE 1088
Query: 293 PTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIY 352
+ E + V I T K SE E ++ + + + S E
Sbjct: 1089 KD--EGDSDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDE----------- 1135
Query: 353 RAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRG----------VLRSIS 402
E V + + E V ++ S+ E ++ G + S+
Sbjct: 1136 ---------EEVVAREEEEEEEEEEMVAEESMASAGPEDFEQDGEEAALAPGAPAVDSLG 1186
Query: 403 CEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPS----LTP-PPAI 457
EE +T EE P + LP+ V A S E+ +S L+P PPA
Sbjct: 1187 MEEEVDIETEAVAPEERPSMLDEPPLPVGVEEPADSREPPEEPGLSQEGAMLLSPEPPAK 1246
Query: 458 AHPALPTI-PER 468
A P + PER
Sbjct: 1247 EVEARPPLSPER 1258
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 165 LADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDS 224
L D W + +EE + P T + + E T EE E RN N+ +
Sbjct: 71 LVDYMYWEKASRRMLEEERV------PVTFVKSEEKTQEEHEEIEKRNKNMAQYLK---- 120
Query: 225 HTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHE 283
E + ++ + S S+ +D++D++++DDDDD+ +DDG+ E
Sbjct: 121 -----------EKLNNEIVANKRESKGSSNIQETDEEDEEEEDDDDDDEGEDDGEESEE 168
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 43.1 bits (100), Expect = 6e-04
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHEA 284
+D+DDDDDD++DDD DDDD +D EA
Sbjct: 160 ADEDDDDDDEEDDDEDDDDDDFDDEEA 186
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 194 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252
++A ED S +EE+ED + +++ S P G Q +
Sbjct: 116 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAA 160
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGD 279
DD++DDD+DDDDD+ DD++ +
Sbjct: 161 DEDDDDDDEEDDDEDDDDDDFDDEEAE 187
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
DDDDDD++DDD+D+ DDD D + E
Sbjct: 163 DDDDDDEEDDDEDDDDDDFDDEEAE 187
>gi|119395727 cardiac calsequestrin 2 precursor [Homo sapiens]
Length = 399
Score = 42.4 bits (98), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 227 PCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHE 283
P D+ ++E + L+ +N DDD+DDDDDD+ D D+DD D+D +
Sbjct: 347 PDDDDLPTAEELEDWIEDVLSGKINTE-----DDDEDDDDDDNSDEEDNDDSDDDDD 398
Score = 40.0 bits (92), Expect = 0.005
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 237 PFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHE 283
P + ++ + ++G + DD+DDDDDD+ D+ +DD D+D E
Sbjct: 353 PTAEELEDWIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE 399
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 42.4 bits (98), Expect = 0.001
Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)
Query: 196 ANGEDTTSSEEEKEDRN----TNVNAMHQVTDSHTPCHKDVASSEPFSGQV-NSQLNCSV 250
+ +T+ SE + +D + N N+ + + +D SG ++ +NC+
Sbjct: 443 SESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNACDNDMNCND 502
Query: 251 NGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHT---------- 300
+G SS + D D DD + D + G++ ALG + S +
Sbjct: 503 DGHSSSNPDSRDSDDSFEHSDFENPKAGEDGFGALGAMQIKVERYVESESDLRLQNCESL 562
Query: 301 VEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVN 360
++ + S K ++ K++RK G S + L + +P + V+
Sbjct: 563 TSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPR 622
Query: 361 GEYVPRK-SILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSE 413
P S+LK ++ + + ++SS + R + R+ S T +SE
Sbjct: 623 LLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSE 676
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 42.4 bits (98), Expect = 0.001
Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)
Query: 196 ANGEDTTSSEEEKEDRN----TNVNAMHQVTDSHTPCHKDVASSEPFSGQV-NSQLNCSV 250
+ +T+ SE + +D + N N+ + + +D SG ++ +NC+
Sbjct: 424 SESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNACDNDMNCND 483
Query: 251 NGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHT---------- 300
+G SS + D D DD + D + G++ ALG + S +
Sbjct: 484 DGHSSSNPDSRDSDDSFEHSDFENPKAGEDGFGALGAMQIKVERYVESESDLRLQNCESL 543
Query: 301 VEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVN 360
++ + S K ++ K++RK G S + L + +P + V+
Sbjct: 544 TSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPR 603
Query: 361 GEYVPRK-SILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSE 413
P S+LK ++ + + ++SS + R + R+ S T +SE
Sbjct: 604 LLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSE 657
>gi|11545835 TSPY-like 2 [Homo sapiens]
Length = 693
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 196 ANGEDTTSSEEEKEDRNTNVNAMHQVTDSH--TPCHKDVASSEPF------SGQVNSQLN 247
A+ +TT + E +D N N ++ TD + P + + F N+Q +
Sbjct: 499 ADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGNNFFKGGFWGSHGNNQDS 558
Query: 248 CSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVE 302
+ + SDD+D+D ++ D++ DDD + D+E G D+ Y+ +E
Sbjct: 559 SDSDNEADEASDDEDNDGNEGDNEGSDDDGNEGDNE--GSDDDDRDIEYYEKVIE 611
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/107 (19%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 181 EELLGELDSKPDTV----IANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSE 236
E++ E+ +T+ I++ +TT E ++ T++N + DS P H +V ++E
Sbjct: 434 EDIFSEISDIDETIHDIKISDFMETTDYFETTDNEITDIN--ENICDSENPDHNEVPNNE 491
Query: 237 PFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHE 283
+ + + D+++ DD++++ D++ +D+E
Sbjct: 492 TTDNN---------ESADDHETTDNNESADDNNENPEDNNKNTDDNE 529
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 203 SSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDD 262
S E+++ED + + D + +D S S + S+ D+++
Sbjct: 640 SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESE-----------DGDENE 688
Query: 263 DDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
+DD+D+DDD DD+D DN+ E +S
Sbjct: 689 EDDEDEDDDEDDDEDEDNESEGSSSSSSS 717
Score = 37.7 bits (86), Expect = 0.024
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
S S D++D+DD+D+D++ DD++GD+ + GD+S
Sbjct: 638 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDG---GDSS 673
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 237 PFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNID--DDDGDNDHEA 284
P S + Q DD+D+D++++DD+N D +D GD+ +
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 676
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 203 SSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDD 262
S E+++ED + + D + +D S S + S+ D+++
Sbjct: 640 SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESE-----------DGDENE 688
Query: 263 DDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
+DD+D+DDD DD+D DN+ E +S
Sbjct: 689 EDDEDEDDDEDDDEDEDNESEGSSSSSSS 717
Score = 37.7 bits (86), Expect = 0.024
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
S S D++D+DD+D+D++ DD++GD+ + GD+S
Sbjct: 638 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDG---GDSS 673
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 237 PFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNID--DDDGDNDHEA 284
P S + Q DD+D+D++++DD+N D +D GD+ +
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 676
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 203 SSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDD 262
S E+++ED + + D + +D S S + S+ D+++
Sbjct: 677 SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESE-----------DGDENE 725
Query: 263 DDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
+DD+D+DDD DD+D DN+ E +S
Sbjct: 726 EDDEDEDDDEDDDEDEDNESEGSSSSSSS 754
Score = 37.7 bits (86), Expect = 0.024
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 253 SSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 291
S S D++D+DD+D+D++ DD++GD+ + GD+S
Sbjct: 675 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDG---GDSS 710
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 237 PFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNID--DDDGDNDHEA 284
P S + Q DD+D+D++++DD+N D +D GD+ +
Sbjct: 664 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 713
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 42.0 bits (97), Expect = 0.001
Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 34/235 (14%)
Query: 77 VEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHR 136
++ +K +K ID V K E++ + + +D I + + C +FK
Sbjct: 94 IKKKKTQTKKEIDSKNLVEKKKETKKANHKGSENKTDLDNSIGIKKMKTSC--KFKIDSN 151
Query: 137 IAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIA 196
I+ K SK T + K K + + LEE +R LDS ++
Sbjct: 152 ISPKKDSKEFTQ--------KNKKEKKNIVQHTTDSSLEEKQRT------LDSGTSEIVK 197
Query: 197 NGEDTTSSEEEKEDRNTNVNAMHQVTDSHTP------CHKD-----------VASSEPFS 239
+ S+ +E ++ M + +D + C KD + S E
Sbjct: 198 SPR-IECSKTRREMQSVVQLIMTRDSDGYENSTDGEMCDKDALEEDSESVSEIGSDEESE 256
Query: 240 GQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPT 294
++ S S + S +++D+D+++D+D++ +DDD + L G +I T
Sbjct: 257 NEITSVGRASGDDDGSEDDEEEDEDEEEDEDEDSEDDDKSDSGPDLARGKGNIET 311
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 41.6 bits (96), Expect = 0.002
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHEA 284
+DDDD++D+D+DDN +DDD ++D EA
Sbjct: 343 EDDDDEEDNDEDDNDEDDDDEDDDEA 368
Score = 39.3 bits (90), Expect = 0.008
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
DD+D+DDDD+DDD +D+D D D +
Sbjct: 354 DDNDEDDDDEDDDEAEDNDEDEDDD 378
Score = 38.1 bits (87), Expect = 0.019
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
D+D+DD+D+DDDD DD+ DND +
Sbjct: 350 DNDEDDNDEDDDDEDDDEAEDNDED 374
Score = 37.0 bits (84), Expect = 0.041
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
DDD++D+D+DD+D DDD+ D++ E
Sbjct: 345 DDDEEDNDEDDNDEDDDDEDDDEAE 369
Score = 36.6 bits (83), Expect = 0.054
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
D+D+DDDD+DDD+ D+D+ ++D E
Sbjct: 355 DNDEDDDDEDDDEAEDNDEDEDDDE 379
Score = 36.2 bits (82), Expect = 0.070
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 259 DDDDDDDDDDDDDNIDDDDGDNDHE 283
+D+D+DD+D+DDD+ DDD+ +++ E
Sbjct: 349 EDNDEDDNDEDDDDEDDDEAEDNDE 373
Score = 36.2 bits (82), Expect = 0.070
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHE 283
+D+DD+D+DDDD+D+ + +D D D +
Sbjct: 351 NDEDDNDEDDDDEDDDEAEDNDEDED 376
Score = 36.2 bits (82), Expect = 0.070
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 258 SDDDDDDDDDDDDDNIDDDDGDNDHE 283
+D+DDDD+DDD+ ++ D+D+ D++ E
Sbjct: 356 NDEDDDDEDDDEAEDNDEDEDDDEEE 381
Score = 35.8 bits (81), Expect = 0.092
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 257 HSDDDDDDDDDDDDDNIDDDDGDND 281
+ +DDDD+DDD+ +DN +D+D D +
Sbjct: 356 NDEDDDDEDDDEAEDNDEDEDDDEE 380
Score = 33.9 bits (76), Expect = 0.35
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 251 NGSSSYHSDDDDDDDDDDDDDNIDDDDGDND 281
N DDDD+DDD+ +D++ D+DD + +
Sbjct: 351 NDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE 381
>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
Length = 1097
Score = 41.2 bits (95), Expect = 0.002
Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 35/262 (13%)
Query: 97 NFESRVEFTEDLQKMSDAAGDIVDIREEIKCD--FEFKAKHRIAHKPHSKPKTSDIFEAD 154
NF+ VE + ++ + + D KC+ + FK+KH P KT D+ +
Sbjct: 375 NFKKHVELHVNPRQFNCP---VCDYAASKKCNLQYHFKSKH-----PTCPNKTMDVSKVK 426
Query: 155 IANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTN 214
+ K + L D + E+E Q ++ G++ K + E S+E+K N +
Sbjct: 427 LKKTKKREADLPDN-ITNEKTEIE-QTKIKGDVAGKKNEKSVKAEKRDVSKEKKPSNNVS 484
Query: 215 VNAMHQVTDSHTPCHKDV-----ASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDD 269
V + T K++ ++SE FS S+ V+ S S H +D++
Sbjct: 485 VIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVD-SHSLHGPVNDEESSTKK 543
Query: 270 DDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKR 329
++ +N E + GD+ +V N +NT +K S KK+ K
Sbjct: 544 KKKVESKSKNNSQE-VPKGDS--------------KVEENKKQNTCMKKSTKKKTL--KN 586
Query: 330 KNSTGSGHSAQELPTIRTPADI 351
K+S S Q+ P + A +
Sbjct: 587 KSSKKSSKPPQKEPVEKGSAQM 608
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 31/179 (17%)
Query: 176 ELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASS 235
E E EE G L P + + E + S+ E++ A +DS S
Sbjct: 26 ESEDSEEWKGHLAQAPTPPLESSESSEGSKVSSEEQ-----ANEDPSDS--------TQS 72
Query: 236 EPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDND------------HE 283
E G + Q + G S + DD DDD+DD+ DD GD+D +
Sbjct: 73 EEGLGSDDHQYIYRLAGGFSRSTGKGGDDKDDDEDDSGDDTFGDDDSGPGPKDRQEGGNS 132
Query: 284 ALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNS-TGSGHSAQE 341
LG ++S TI S P+ ++ ++TT SE +E R +S G S QE
Sbjct: 133 RLGSDEDSDDTIQASEESAPQGQ--DSAQDTT---SESRELDNEDRVDSKPEGGDSTQE 186
Score = 34.7 bits (78), Expect = 0.20
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
Query: 158 DVKSKDLLADKELWARLEELERQEELLGEL-DSKPD---TVIANGEDTTSSEEE------ 207
D S + + L ++ E QEE++ E PD + + + ED+ SSEE+
Sbjct: 334 DGPSSESSQEANLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLS 393
Query: 208 ---KEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDD 264
E R ++ + + + + E S Q Q + S S S S ++DD
Sbjct: 394 HSKSESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDD 453
Query: 265 DDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKN 313
D D +D + ++ D + I +E +++ ++ N
Sbjct: 454 SDSQDSSRSKEDSNSTESKSSSEEDGQLKNI----EIESRKLTVDAYHN 498
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 40.8 bits (94), Expect = 0.003
Identities = 68/349 (19%), Positives = 131/349 (37%), Gaps = 58/349 (16%)
Query: 106 EDLQKMSDAAGDIVDIREEIKCDFEFK--AKHRIAHKPHSKPKTSDIFEADIANDVKSKD 163
ED+ K + +I ++++ D E + K +I+ +P +D N+ K
Sbjct: 149 EDVGKHPASDSEIEELQKSPASDSETEDALKPQISDSESEEPPRHQA--SDSENEEPPKP 206
Query: 164 LLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTD 223
++D E EEL + + E + P ++ E+ + D + HQ +D
Sbjct: 207 RMSDSES----EELPKPQVSDSESEEPPRHQASDSENEELPKPRISDSESEDPPRHQASD 262
Query: 224 SHT-----PCHKDVASSEPFSGQVNSQLN----------------------CSVNGSSSY 256
S P D S +P Q + N S +S
Sbjct: 263 SENEELPKPRISDSESEDPPRNQASDSENEELPKPRVSDSESEGPQKGPASDSETEDASR 322
Query: 257 HSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYF----SHTVEPKRVRINTGK 312
H + DDD D ++ +D + ND D+ + F S E K+ ++++ +
Sbjct: 323 HKQKPESDDDSDRENKGEDTEMQNDSFH---SDSHMDRKKFHSSDSEEEEHKKQKMDSDE 379
Query: 313 NTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTI---RTPADIYRAFVDVVNGEYVPRKSI 369
+ E +EE KRK + S +E + R +D + D V+
Sbjct: 380 DE----KEGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDSDSDAVSD-------- 427
Query: 370 LKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEE 418
KS RE ++ SD+ E + E D++ + + ++ + E+++ +
Sbjct: 428 -KSGKREKTIASDSEEEAGKELSDKKNEEKDLFGSDSESGNEEENLIAD 475
Score = 32.0 bits (71), Expect = 1.3
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 25/99 (25%)
Query: 197 NGEDTTS----SEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252
+G DT S SE E DR + H VTDS + EP + LN S +
Sbjct: 38 SGSDTGSVERHSENETSDREDGLPKGHHVTDSE--------NDEPLN------LNASDSE 83
Query: 253 SSSYHSDDDDDDDDDD-------DDDNIDDDDGDNDHEA 284
S H D D + ++ D +N D + +D E+
Sbjct: 84 SEELHRQKDSDSESEERAEPPASDSENEDVNQHGSDSES 122
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 40.8 bits (94), Expect = 0.003
Identities = 68/292 (23%), Positives = 105/292 (35%), Gaps = 27/292 (9%)
Query: 200 DTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSD 259
D S + E D N++ DS P S P +S + + SS +
Sbjct: 150 DDNSDDSEAPDDNSD--------DSEAPDDNSDDSEAPDDNSDDSDVPDDNSDDSSDDNS 201
Query: 260 DDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFS 319
DD DD+ DD D DD D+D D+ +P + P + S
Sbjct: 202 DDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSDDSEAPD--DSSDDSEAPDDSS 259
Query: 320 EKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSV 379
+ E +S S+ + +D A D + P +S ++ V
Sbjct: 260 DDSEAPDDSSDDSEAPDDSSDDSEASDDSSDDSEASDDSSDDSEAP-----DDKSDDSDV 314
Query: 380 CSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSG 439
D S+ S DD L E C++ + EEE E +V+ S
Sbjct: 315 PEDKSDDSDVP-DDNSDDLEVPVPAEDLCNEGQIASDEEELVE-----AAAAVSQHDSSD 368
Query: 440 TVIEKEFVSPSLTPPPAIAHPALPTIPERK----EVLLEASEETGKRVSKFK 487
E++ + +L+ PP+ A P + ERK E E++GKR SK K
Sbjct: 369 DAGEQD-LGENLSKPPSDPE-ANPEVSERKLPTEEEPAPVVEQSGKRKSKTK 418
Score = 38.5 bits (88), Expect = 0.014
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 200 DTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSD 259
D S + E D N++ DS P S P +S+ + S D
Sbjct: 140 DDNSDDSEAPDDNSD--------DSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSDVPDD 191
Query: 260 DDDDDDDDDDDDNIDDDDGDNDHEALGVGDNSIP 293
+ DD DD+ DD+ DD+ D+D D+ +P
Sbjct: 192 NSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVP 225
Score = 35.8 bits (81), Expect = 0.092
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 196 ANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTP--CHKDVASSEP---FSGQVN-----SQ 245
++ ++ + EEK+ + +N+ D +P CH A EP S N +
Sbjct: 81 SDSDEECHTHEEKKAKLLEINS-----DDESPECCHVKPAIQEPPIVISDDDNDDDNGND 135
Query: 246 LNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDG--DNDHEALGVGDNS 291
L + S + DD+ DD + DDN DD + DN ++ DNS
Sbjct: 136 LEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNS 183
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 191 PDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSV 250
PD + + + ++ D N++ ++ DS P K S P +S +
Sbjct: 179 PDDNSDDSDVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDS 238
Query: 251 NGSSSYHSDDDDDDD--DDDDDDNIDDDDGDNDHEA 284
+ S D DD + DD DD+ DD +D EA
Sbjct: 239 SDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEA 274
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 188 DSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTD-----SHTPCHKDVASSEPFSGQV 242
D+ D+ + + SS++ +D + + + V D S P S P
Sbjct: 181 DNSDDSDVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSD 240
Query: 243 NSQLNCSVNGSSSYHSDDDDDDD--DDDDDDNIDDDDGDNDHEA 284
+S+ + S D DD + DD DD+ DD +D EA
Sbjct: 241 DSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEA 284
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 199 EDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHS 258
+D + E +D + + + +D + + D +S + +S + + S
Sbjct: 170 DDNSDDSEAPDDNSDDSDVPDDNSDDSSDDNSDDSSDD---NSDDSDVPDDKSDDSDVPD 226
Query: 259 DDDDDDD--DDDDDDNIDDDDGDNDHEA 284
D DD D DD DD+ DD +D EA
Sbjct: 227 DSSDDSDVPDDSSDDSEAPDDSSDDSEA 254
Score = 29.6 bits (65), Expect = 6.6
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 204 SEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDD 263
S+++ +D N N D P S P +S+ + S D+ DD
Sbjct: 124 SDDDNDDDNGN--------DLEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDD 175
Query: 264 D---DDDDDDDNIDDDDGDNDHE 283
DD+ DD ++ DD+ D+ +
Sbjct: 176 SEAPDDNSDDSDVPDDNSDDSSD 198
Score = 29.6 bits (65), Expect = 6.6
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 191 PDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSV 250
PD + E S ++ E + + + DS SS+ +S +
Sbjct: 235 PDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEASDDSSDDSEA 294
Query: 251 NGSSSYHSDDDDDDDDDDD--DDNIDDDDGDNDH 282
+ SS S+ DD DD D +D DD D +D+
Sbjct: 295 SDDSSDDSEAPDDKSDDSDVPEDKSDDSDVPDDN 328
Score = 29.3 bits (64), Expect = 8.6
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 188 DSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTD-SHTPCHKDVASSEPFSGQVNSQL 246
DS D+ + +D++ E +D + + A +D S P S P +S+
Sbjct: 227 DSSDDSDVP--DDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDSSDDSE- 283
Query: 247 NCSVNGSSSYHSDDDDDDDDDDD--DDNIDDDDGDND 281
+ SS S+ DD DD + DD DD D D
Sbjct: 284 ---ASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPED 317
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,963,475
Number of Sequences: 37866
Number of extensions: 987447
Number of successful extensions: 10884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 6789
Number of HSP's gapped (non-prelim): 1845
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.